TCONS_00066363 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066363
Unique NameTCONS_00066363
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length434

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066363 ID=TCONS_00066363|Name=TCONS_00066363|organism=Clytia hemisphaerica|type=transcript|length=434bp
ATCtggttaaaatcaaaatcatcaccCACAAACAGACGTCAAGCAAGAAT
CCGATATGTAATCGCGAGGAACCGTGTCAATCGAAAGATGGCACTTGCAA
AAAGGGAACACGATCTAGCCATCGGTGAAAACTCAAAGAGAAACCCAAAA
CCGTTCTGGTCACATGTCAGAGGCAAActtaaatcaaaaagtggagTTTC
CCCTCTTCTTGAAACGCCCGATGACAAGACATCCCTAAAGCACGAGGACC
AAGAAAAGGCCAACATCCTGCAGAAACAATTTTGTAGTGTCTTTACTAAA
GAACCGGAAGGTGATCTACCTGATTTCGACAACAGAACAGATAAAATACT
TCAACCACTAAACATTACGAAGGAAATGATAACAGAACAAATCAGGAAGC
TCAATGCGAATAAATCAATAGGTCCAGATGAGAT
Run BLAST on NCBI

protein sequence of TCONS_00066363-protein

>TCONS_00066363-protein ID=TCONS_00066363-protein|Name=TCONS_00066363-protein|organism=Clytia hemisphaerica|type=polypeptide|length=144bp
IWLKSKSSPTNRRQARIRYVIARNRVNRKMALAKREHDLAIGENSKRNPK
PFWSHVRGKLKSKSGVSPLLETPDDKTSLKHEDQEKANILQKQFCSVFTK
EPEGDLPDFDNRTDKILQPLNITKEMITEQIRKLNANKSIGPDE
Run BLAST on NCBI

transcript from alignment at scaffold_452:85585..86018

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066363 ID=TCONS_00066363|Name=TCONS_00066363|organism=Clytia hemisphaerica|type=transcript|length=434bp|location=Sequence derived from alignment at scaffold_452:85585..86018 (Clytia hemisphaerica)
ATCTCATCTGGACCTATTGATTTATTCGCATTGAGCTTCCTGATTTGTTC
TGTTATCATTTCCTTCGTAATGTTTAGTGGTTGAAGTATTTTATCTGTTC
TGTTGTCGAAATCAGGTAGATCACCTTCCGGTTCTTTAGTAAAGACACTA
CAAAATTGTTTCTGCAGGATGTTGGCCTTTTCTTGGTCCTCGTGCTTTAG
GGATGTCTTGTCATCGGGCGTTTCAAGAAGAGGGGAAActccactttttg
atttaagTTTGCCTCTGACATGTGACCAGAACGGTTTTGGGTTTCTCTTT
GAGTTTTCACCGATGGCTAGATCGTGTTCCCTTTTTGCAAGTGCCATCTT
TCGATTGACACGGTTCCTCGCGATTACATATCGGATTCTTGCTTGACGTC
TGTTTGTGggtgatgattttgattttaaccaGAT

Coding sequence (CDS) from alignment at scaffold_452:85585..86018

>TCONS_00066363 ID=TCONS_00066363|Name=TCONS_00066363|organism=Clytia hemisphaerica|type=CDS|length=432bp|location=Sequence derived from alignment at scaffold_452:85585..86018 (Clytia hemisphaerica)
CTCATCTGGACCTATTGATTTATTCGCATTGAGCTTCCTGATTTGTTCTG
TTATCATTTCCTTCGTAATGTTTAGTGGTTGAAGTATTTTATCTGTTCTG
TTGTCGAAATCAGGTAGATCACCTTCCGGTTCTTTAGTAAAGACACTACA
AAATTGTTTCTGCAGGATGTTGGCCTTTTCTTGGTCCTCGTGCTTTAGGG
ATGTCTTGTCATCGGGCGTTTCAAGAAGAGGGGAAActccactttttgat
ttaagTTTGCCTCTGACATGTGACCAGAACGGTTTTGGGTTTCTCTTTGA
GTTTTCACCGATGGCTAGATCGTGTTCCCTTTTTGCAAGTGCCATCTTTC
GATTGACACGGTTCCTCGCGATTACATATCGGATTCTTGCTTGACGTCTG
TTTGTGggtgatgattttgattttaaccaGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041536XLOC_041536Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066363-exon-scaffold_452-1491911889:85585..86018TCONS_00066363-exon-scaffold_452-1491911889:85585..86018Clytia hemisphaericaexon
TCONS_00066363-exon-scaffold_452-1510915933:85585..86018TCONS_00066363-exon-scaffold_452-1510915933:85585..86018Clytia hemisphaericaexon
TCONS_00066363-exon-scaffold_452-1575043694:85585..86018TCONS_00066363-exon-scaffold_452-1575043694:85585..86018Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066363-proteinTCONS_00066363-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_452supercontigscaffold_452:85585..86018 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.351956	1.71722	1.28836	2.06623	2.40665	2.9072	4.27867	2.02779	3.37859	3.07905	2.65027	3.97364	2.23752	1.15373	1.81574	0.759549	0.793879	0.258335	1.55983	0.568841	3.4587	1.57472	0	4.70002	3.8819	1.84227	1.43883	0.430805	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066363 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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