TCONS_00066373 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066373
Unique NameTCONS_00066373
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length820

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066373 ID=TCONS_00066373|Name=TCONS_00066373|organism=Clytia hemisphaerica|type=transcript|length=820bp
ggTTCAGTAGTGTAACACATCAGATCAAGCTGAAAAGCAAGCTGTAAGCG
TGATTCTGCAGATTTCTTGGCATgttttagatcaaaacttaatttctttg
atggaaatgattTGTTTAAATGAAGAATAGACCCTACAGAAGCTATAAAG
TTGCTGTACATTGGTTATGTTGCTGGATTTCTacgaaaaacatttaagtt
gccgccattttgttttgagagcaTATACGGTAGGCGGTGTGCTTTTGGTG
GCTCACATAATGTTTGGTAGTGGATTTAAATGTaactgagatatttccaa
gcacaacatgatgtaacagagatggaaatgtgcattataatgaactggac
cTAACTTCTGGAAACGCACATTCTCATCTGACACCTGCCACTCATAACAG
CCTTCCTTCGGTCAAGCCAGCTCATTGCTCATTGTCATCTAGTGtatgtg
aataaaaatatgcacACAAAAAGTTTTCATGCCTGCAGAGAGTCATGCTG
GACTTTCAATGAACATTTCGACACACTTATGTGGctgttttcacccaaat
ttgatgttatcgCAAGATTACCGCAAACTTTGCTATGTATACATGACTTT
AGCgcaacatgtttttgttgaNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTTAGCgc
aacatgtttttgttgatttttggatattttatcaatttttgtgaaatgtt
ttactttaacttttgaaACCTGACTGGTTGGATGAGTATTGAAAAGTGCT
AGCTCCATGAAATTGTTTCT
Run BLAST on NCBI

transcript from alignment at scaffold_453:6407..7226

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066373 ID=TCONS_00066373|Name=TCONS_00066373|organism=Clytia hemisphaerica|type=transcript|length=820bp|location=Sequence derived from alignment at scaffold_453:6407..7226 (Clytia hemisphaerica)
AGAAACAATTTCATGGAGCTAGCACTTTTCAATACTCATCCAACCAGTCA
GGTttcaaaagttaaagtaaaacatttcacaaaaattgataaaatatcca
aaaatcaacaaaaacatgttgcGCTAAAGNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNt
caacaaaaacatgttgcGCTAAAGTCATGTATACATAGCAAAGTTTGCGG
TAATCTTGcgataacatcaaatttgggtgaaaacagCCACATAAGTGTGT
CGAAATGTTCATTGAAAGTCCAGCATGACTCTCTGCAGGCATGAAAACTT
TTTGTgtgcatatttttattcacataCACTAGATGACAATGAGCAATGAG
CTGGCTTGACCGAAGGAAGGCTGTTATGAGTGGCAGGTGTCAGATGAGAA
TGTGCGTTTCCAGAAGTTAggtccagttcattataatgcacatttccatc
tctgttacatcatgttgtgcttggaaatatctcagttACATTTAAATCCA
CTACCAAACATTATGTGAGCCACCAAAAGCACACCGCCTACCGTATAtgc
tctcaaaacaaaatggcggcaacttaaatgtttttcgtAGAAATCCAGCA
ACATAACCAATGTACAGCAACTTTATAGCTTCTGTAGGGTCTATTCTTCA
TTTAAACAaatcatttccatcaaagaaattaagttttgatctaaaacATG
CCAAGAAATCTGCAGAATCACGCTTACAGCTTGCTTTTCAGCTTGATCTG
ATGTGTTACACTACTGAAcc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041546XLOC_041546Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066373-exon-scaffold_453-1491911889:6407..7226TCONS_00066373-exon-scaffold_453-1491911889:6407..7226Clytia hemisphaericaexon
TCONS_00066373-exon-scaffold_453-1510915933:6407..7226TCONS_00066373-exon-scaffold_453-1510915933:6407..7226Clytia hemisphaericaexon
TCONS_00066373-exon-scaffold_453-1575043694:6407..7226TCONS_00066373-exon-scaffold_453-1575043694:6407..7226Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_453supercontigscaffold_453:6407..7226 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.05331	1.02346	0.637062	0.647237	23.5132	15.496	21.494	26.3035	7.51442	11.6632	10.2294	7.67313	9.1035	5.77827	2.95721	5.78777	2.45918	3.30311	6.57492	5.62911	4.05913	3.32957	3.33299	3.26	9.08858	17.6795	6.53925	5.54764	12.4857	8.51858
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066373 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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