TCONS_00066382 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066382
Unique NameTCONS_00066382
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length498

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066382 ID=TCONS_00066382|Name=TCONS_00066382|organism=Clytia hemisphaerica|type=transcript|length=498bp
AAGAGGCAGAGGTTTGAGGCCCTACCAGAAGAGGCCAAATTCCAATGGGA
CCTACCTGAATCCCTCTTGGATTATTCCATGAAATACTTTACAAAGTACG
TACCTGAAAGAGACTTGAAAGAATCAGTAACCCAAGGGAACCCGGTCCCT
GATAATTTCTTAAAAGTCCCAAGATTGGACGGCTACTACTATGAGTTGCT
GGAGGAAAGGAAAAAGATTCTTGATTTGGCAAAGGACTCCGCTTATAAGA
GGATCCAAGAAAAGTTACGTTTGACAATGGGACCACTATGCAAACTGTGG
TATTTAATCGAAGAATTTATCGAAAACCCAGATACACCCATCTCTATGGA
GTATAGGGAGGAAATGGCTCAGTACATCGAGCAGACAGTTATGTTGTCGG
GTCAAACCTTCAACGCCATCACCAACAACCGTAGAATGACGGTTCTCACG
GCGGTTGGTCAGGAGAATAAGAGACCAAAGGACAACTTGAAAGAAAAC
Run BLAST on NCBI

protein sequence of TCONS_00066382-protein

>TCONS_00066382-protein ID=TCONS_00066382-protein|Name=TCONS_00066382-protein|organism=Clytia hemisphaerica|type=polypeptide|length=166bp
KRQRFEALPEEAKFQWDLPESLLDYSMKYFTKYVPERDLKESVTQGNPVP
DNFLKVPRLDGYYYELLEERKKILDLAKDSAYKRIQEKLRLTMGPLCKLW
YLIEEFIENPDTPISMEYREEMAQYIEQTVMLSGQTFNAITNNRRMTVLT
AVGQENKRPKDNLKEN
Run BLAST on NCBI

transcript from alignment at scaffold_454:22145..22642

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066382 ID=TCONS_00066382|Name=TCONS_00066382|organism=Clytia hemisphaerica|type=transcript|length=498bp|location=Sequence derived from alignment at scaffold_454:22145..22642 (Clytia hemisphaerica)
GTTTTCTTTCAAGTTGTCCTTTGGTCTCTTATTCTCCTGACCAACCGCCG
TGAGAACCGTCATTCTACGGTTGTTGGTGATGGCGTTGAAGGTTTGACCC
GACAACATAACTGTCTGCTCGATGTACTGAGCCATTTCCTCCCTATACTC
CATAGAGATGGGTGTATCTGGGTTTTCGATAAATTCTTCGATTAAATACC
ACAGTTTGCATAGTGGTCCCATTGTCAAACGTAACTTTTCTTGGATCCTC
TTATAAGCGGAGTCCTTTGCCAAATCAAGAATCTTTTTCCTTTCCTCCAG
CAACTCATAGTAGTAGCCGTCCAATCTTGGGACTTTTAAGAAATTATCAG
GGACCGGGTTCCCTTGGGTTACTGATTCTTTCAAGTCTCTTTCAGGTACG
TACTTTGTAAAGTATTTCATGGAATAATCCAAGAGGGATTCAGGTAGGTC
CCATTGGAATTTGGCCTCTTCTGGTAGGGCCTCAAACCTCTGCCTCTT

Coding sequence (CDS) from alignment at scaffold_454:22145..22642

>TCONS_00066382 ID=TCONS_00066382|Name=TCONS_00066382|organism=Clytia hemisphaerica|type=CDS|length=498bp|location=Sequence derived from alignment at scaffold_454:22145..22642 (Clytia hemisphaerica)
GTTTTCTTTCAAGTTGTCCTTTGGTCTCTTATTCTCCTGACCAACCGCCG
TGAGAACCGTCATTCTACGGTTGTTGGTGATGGCGTTGAAGGTTTGACCC
GACAACATAACTGTCTGCTCGATGTACTGAGCCATTTCCTCCCTATACTC
CATAGAGATGGGTGTATCTGGGTTTTCGATAAATTCTTCGATTAAATACC
ACAGTTTGCATAGTGGTCCCATTGTCAAACGTAACTTTTCTTGGATCCTC
TTATAAGCGGAGTCCTTTGCCAAATCAAGAATCTTTTTCCTTTCCTCCAG
CAACTCATAGTAGTAGCCGTCCAATCTTGGGACTTTTAAGAAATTATCAG
GGACCGGGTTCCCTTGGGTTACTGATTCTTTCAAGTCTCTTTCAGGTACG
TACTTTGTAAAGTATTTCATGGAATAATCCAAGAGGGATTCAGGTAGGTC
CCATTGGAATTTGGCCTCTTCTGGTAGGGCCTCAAACCTCTGCCTCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041550XLOC_041550Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066382-exon-scaffold_454-1491911889:22145..22642TCONS_00066382-exon-scaffold_454-1491911889:22145..22642Clytia hemisphaericaexon
TCONS_00066382-exon-scaffold_454-1510915933:22145..22642TCONS_00066382-exon-scaffold_454-1510915933:22145..22642Clytia hemisphaericaexon
TCONS_00066382-exon-scaffold_454-1575043694:22145..22642TCONS_00066382-exon-scaffold_454-1575043694:22145..22642Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066382-proteinTCONS_00066382-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_454supercontigscaffold_454:22145..22642 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.496648	0.392458	0.473483	0.443269	0.310343	0.256274	0.373118	0.245273	1.38795	0.593517	0.139415	0.149613	0.0921557	0.28337	0	0	0	0.173681	0.140755	0.255933	0.263605	0.235261	0	0.179645	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066382 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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