|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066420 ID=TCONS_00066420|Name=TCONS_00066420|organism=Clytia hemisphaerica|type=transcript|length=2059bpRun BLAST on NCBI transcript from alignment at scaffold_455:311916..318766+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00066420 ID=TCONS_00066420|Name=TCONS_00066420|organism=Clytia hemisphaerica|type=transcript|length=6851bp|location=Sequence derived from alignment at scaffold_455:311916..318766+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00066420 vs. Swiss-Prot (Human)
Match: PDE2A (cGMP-dependent 3',5'-cyclic phosphodiesterase OS=Homo sapiens GN=PDE2A PE=1 SV=1) HSP 1 Score: 233.032 bits (593), Expect = 4.130e-65 Identity = 127/290 (43.79%), Postives = 191/290 (65.86%), Query Frame = 1
Query: 10 GDKLLGKEYRMELCNSGFLFLYSQSKVQSLLITKDSPIDKDLQKLKEVASVDINIEQLLVVPAYSEVGDDVIALFCLFNKIGAKTGFTKLDEELMQMVVKNCRHIVCNALDWKSQLIIQRQNESLLEISKTLFSHLDDVSILLHKIMEEARNLTNAERCSLFLVDHNRGELIAKVFDG-IESENSSEIRIPITNGIAGYVATTGETLNIKDAYSHPLFYKEVDQKTGFKTRHILCFPIRSVSEQIIGVAQLCNKLNGNCFTKFDEERTLGFAIFVGLSLVQVCSMLVFKV 876
GDK+LG+E L + + +Q +T + D+Q+L+ + ++ + +L VP S D V+AL C FNK+ FT DE ++Q ++ + L ++ + ++ + ++LL+++K LF+HLDDVS+LL +I+ EARNL+NAE CS+FL+D N EL+AKVFDG + + S EIRIP GIAG+VATTG+ LNI DAY+HPLFY+ VD TGF+TR+ILCFPI++ ++++IGVA+L NK+NG F+KFDE+ F+I+ G+S+ S+L KV
Sbjct: 280 GDKVLGEEVSFPLTGCLGQVVEDKKSIQLKDLTSE-----DVQQLQSMLGCEL--QAMLCVPVISRATDQVVALACAFNKLEGDL-FTDEDEHVIQHCFHYTSTVLTSTLAFQKEQKLKCECQALLQVAKNLFTHLDDVSVLLQEIITEARNLSNAEICSVFLLDQN--ELVAKVFDGGVVDDESYEIRIPADQGIAGHVATTGQILNIPDAYAHPLFYRGVDDSTGFRTRNILCFPIKNENQEVIGVAELVNKINGPWFSKFDEDLATAFSIYCGISIAH--SLLYKKV 557 HSP 2 Score: 201.06 bits (510), Expect = 2.522e-54 Identity = 101/201 (50.25%), Postives = 139/201 (69.15%), Query Frame = 3
Query: 1452 LVQSLLYKKATDAKQRSKLANELMLYHMMVSQEEIDSYVKVAMPTKDSLHPDMDKFSFMPRISFAETDSIKVVLSMFNDLNVIKRWKVSESTLVRFILTVRRGYRDVPYHNWTHAWTVAHFSYTLLKKTNALDYLSDLEVFVLLVSCLCHDIDHRGTNNSFQIXXXXXXXXXXXXXGSVLERHHFAQAMCIVQTEHNNVFE 2054
+ SLLYKK +A+ RS LANE+M+YHM VS +E + + ++ + F++ PR S E D+ +LSM D+N I +K+ TL RF L V++GYRD PYHNW HA++V+HF Y L K +YL D+E+F L +SC+CHD+DHRGTNNSFQ++S+SVLA+LYSS GSV+ERHHFAQA+ I+ T N+F+
Sbjct: 548 IAHSLLYKKVNEAQYRSHLANEMMMYHMKVSDDEYTKLLHDGIQPVAAIDSNFASFTYTPR-SLPEDDTSMAILSMLQDMNFINNYKIDCPTLARFCLMVKKGYRDPPYHNWMHAFSVSHFCYLLYKNLELTNYLEDIEIFALFISCMCHDLDHRGTNNSFQVASKSVLAALYSSEGSVMERHHFAQAIAILNTHGCNIFD 747 The following BLAST results are available for this feature:
BLAST of TCONS_00066420 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.