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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066422 ID=TCONS_00066422|Name=TCONS_00066422|organism=Clytia hemisphaerica|type=transcript|length=2720bp
GAGAGAAAGTACGAATTGTTTTGATTAATTTCAGTTGGTGGGCAACCATT
ATATAATTGAGTATCTCTTGCTCTGTTGGGAATATTGATAATCATAGGAT
TTCGTAAAACAGATAAATATAGAGGAGAAGACAATTATGAGAAATCTGTG
AAATCTTTCTTGTTACTATGTTCATTTGGTTTTGATGAAAGAATGTGAGA
GTACGCAATGacgacaaaatcttttcgacaGGTTTCCATTGACGAAAATA
ATGAAGAGCTTTTTCAAGGCCCAGGATGGAAACATCTCAAAACATCAGTG
GAAAACTTACGTCAAAATTTCACGGTTCTGTGCGACTCCCTAGAAGTCAT
TTTCAATCTTGAAAACACAAAACTGATAGCAACCGGACGAGTGGAGATTC
CGGACACTTCGAGACGCATATTGggtaaagaaaaacaatttgttGAGAAA
TTTCGTGAAAAGTTGGATGCTGTGAAGTGTGTGGTCATTGAGGCGGGCGA
TAATGCGCCTGAATACGCAAGTCTGTACATGTCACTGAATGAGCACGTTC
AAAATGCTATCAAAACTTTGTGCACGGAAGTGAAAGCCCAACTCACAATA
AAAAGCAAATCAACCgaagaaattttggctgaaaatcaaaaaatgatgtT
GGATTTACAGAAGAAAGATAAAGAATTGATGGAGGAGTTGAAACGAAATG
AGACAGTCCTTGTGGAAAAGAGAACACTGACTGCCCGATGTAAAGTTCTG
GAACAACAAATTGACGAGAAGAATACGCGAATACAACAATTACAGAAGGA
GAGCACAGTCGTTTTGTGGAAACGAGAGAAACAAAAGCTGATAGGAACCA
TACATTCACGTGAGAAAGATATAGAAAAACAACTCGAGTCGACATCCAGC
GAAGCCGATAACACGAAATATCGACTTGAGAAACGAATCGAGGAATTACA
AAATAAACTTCGCAAAGAACACGTAAGGAACACTACAAAATCAACTATTC
CAGCATCTGAGGGGCTCGTACTACGTCGAAATCTATTCCTCAAGGAACGG
CTTTACGTGGTAGCAGAAAGCGAGTTGAAAAAGCAGCAACAGTACTACGC
GAATCTGTTCAAAGGGTTGAAGCGAGACCATGAAATTGCAAAAGCAGCAC
ACATGGAGTTATTCGCCGAAGGCAATAACGCCATAGAGACAGCCATTTTA
GAAGAACCTAAATCGGCAAAAACGTTTTCAGACAGACTTAATCGAATCGT
GAAAGCCATTTTTGCGGGAAAGGTCACTGAGTTGAGATCGTCATTACCTG
CCCACTACTTGGGCTACGAACTAAACAAGGGGAACAAAGAAAAACCTAAA
CCAACAGCCGAAAAGAAGAATAAAACAGATTTTATAGTCAAGTTGTCGCC
TGAGGAGGAGGCCAACTTGGATCGGACCGATCTTGGAAGCAGCCTCATCA
AATGGCGATTAAGCGAAACTGAGAACGTTCCAACACTTGGAAAACTGCTA
AGAGACATCCAAAAAGAGCACCCAACCTTCATAGACGAgaaaggaaaatt
gaaaattaaagaaGTGTCCAATTATTTCCCTACAATCTCACAAGAGAAAA
TCACGCATTATTTTAGCCTGTTTTCCATGTGGGATGACAACGGTGATTTC
AGCCTGGACACCACAGAGATTCTACACAATCTACCAGGAATCTTGGGGTA
TTTGTCGACAACGGAAGAGGTAGCAGATGCAGTTCGAGAGATCGATATCG
ATGAATCAGGGACTATTGATTTTTACGAGTTTCTGTTATTGATTAAACTC
TTACAAGACGGCGAAGGAAAATCGTCCTTCTTCCAGAAAAATGATTTCCT
AAAAGTATCCAGTCAGTTGTCGGACTCGAACTCAAAAATATGCGCGATAC
AATGAAAATATTGTGAACTTTATAATAATATAAACAAGTTTGGgatgatt
ttcatcaatttaTGTAGTATTTATGGTAGTAAAAGTAGTGATGTTTATTT
ATGGCAGAAGGTTATTAagtgaaaaagaacaaaaaggtTTTGTCTTTAAG
CGACGTAATTcctgcaaaatatttcaaaatattttttatgtcgTGCATAA
AAATTGAGTAATAATTTCTCGTTGCCGTAAACCTTTTGAGTACAgacaaa
ttcttttttttttaagatttcccCTTCTCCCTTCTATTTTGCTTATTATT
GAAGTGCTTGATAACATCAGCAAAAATTCTACCTCTCTCATTTTGAAGAA
AGCAGCTCCTGTCAACAAACTGTCACTCCCTGCTTGATGCTGAGGTCCAA
CCCGTTCAAGCTGGAAAGAAAACACAAATAAAGAGGTCATAATGTGTGAA
GCTATAATAACATTGCGGAGATCATAGGTTATTGACctgaaatgttaaaa
aaaaacctgtatAATATTTACACTAAACGTAATATCTTTTGACCTTTCAG
TTCACCTATATATCAAGATTTTTAGAAACTTGGATTCTTCTTGTATTTAA
AGATTTCCATACGGATAAAAGATACCCAAACCTACCTCAAGAATTTCTGA
AACCTCTTGTAAACCACCCTTCAAACTTTTGCAGCTTTTCATCAAATATT
TGACATCGTAAATTTTGGGGAAATATAATCTCAGCAAATCGAAAAAATCC
GATTCTTCTGGTGGTAAAGCTTGATTCATcaacaattttaacaaatatcC
AAAGTCATAACCGCTAAGAT Run BLAST on NCBI protein sequence of TCONS_00066422-protein >TCONS_00066422-protein ID=TCONS_00066422-protein|Name=TCONS_00066422-protein|organism=Clytia hemisphaerica|type=polypeptide|length=565bp
MTTKSFRQVSIDENNEELFQGPGWKHLKTSVENLRQNFTVLCDSLEVIFN
LENTKLIATGRVEIPDTSRRILGKEKQFVEKFREKLDAVKCVVIEAGDNA
PEYASLYMSLNEHVQNAIKTLCTEVKAQLTIKSKSTEEILAENQKMMLDL
QKKDKELMEELKRNETVLVEKRTLTARCKVLEQQIDEKNTRIQQLQKEST
VVLWKREKQKLIGTIHSREKDIEKQLESTSSEADNTKYRLEKRIEELQNK
LRKEHVRNTTKSTIPASEGLVLRRNLFLKERLYVVAESELKKQQQYYANL
FKGLKRDHEIAKAAHMELFAEGNNAIETAILEEPKSAKTFSDRLNRIVKA
IFAGKVTELRSSLPAHYLGYELNKGNKEKPKPTAEKKNKTDFIVKLSPEE
EANLDRTDLGSSLIKWRLSETENVPTLGKLLRDIQKEHPTFIDEKGKLKI
KEVSNYFPTISQEKITHYFSLFSMWDDNGDFSLDTTEILHNLPGILGYLS
TTEEVADAVREIDIDESGTIDFYEFLLLIKLLQDGEGKSSFFQKNDFLKV
SSQLSDSNSKICAIQ Run BLAST on NCBI transcript from alignment at scaffold_455:330088..333163+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066422 ID=TCONS_00066422|Name=TCONS_00066422|organism=Clytia hemisphaerica|type=transcript|length=3076bp|location=Sequence derived from alignment at scaffold_455:330088..333163+ (Clytia hemisphaerica)
GAGAGAAAGTACGAATTGTTTTGATTAATTTCAGTTGGTGGGCAACCATT
ATATAATTGAGTATCTCTTGCTCTGTTGGGAATATTGATAATCATAGGAT
TTCGTAAAACAGATAAATATAGAGGAGAAGACAATTATGAGAAATCTGTG
AAATCTTTCTTGTTACTATGTTCATTTGGTTTTGATGAAAGAATGTGAGA
GTACGCAATGacgacaaaatcttttcgacaGGTTTCCATTGACGAAAATA
ATGAAGAGCTTTTTCAAGGCCCAGGATGGAAACATCTCAAAACATCAGTG
GAAAACTTACGTCAAAATTTCACGGTTCTGTGCGACTCCCTAGAAGTCAT
TTTCAATCTTGAAAACACAAAACTGATAGCAACCGGACGAGTGGAGATTC
CGGACACTTCGAGACGCATATTGggtaaagaaaaacaatttgttGAGAAA
TTTCGTGAAAAGTTGGATGCTGTGAAGTGTGTGGTCATTGAGGCGGGCGA
TAATGCGCCTGAATACGCAAGTCTGTACATGTCACTGAATGAGCACGTTC
AAAATGCTATCAAAACTTTGTGCACGGAAGTGAAAGCCCAACTCACAATA
AAAAGCAAATCAACCgaagaaattttggctgaaaatcaaaaaatgatgtT
GGATTTACAGAAGAAAGATAAAGAATTGATGGAGGAGTTGAAACGAAATG
AGACAGTCCTTGTGGAAAAGAGAACACTGACTGCCCGATGTAAAGTTCTG
GAACAACAAATTGACGAGAAGAATACGCGAATACAACAGTAAGTCATCTT
CAGTCATCGGTTTTTCTCTTCTCAAAAAGTGTCTTTATAATCGGAGCCAC
TTATAGCGTTCTAAAGTTACTCCACGCCATGGAGCCACtctttttttaga
aactttgatTAACgcaattttaacatttttgatttGTCTTCTCTAGAAAG
CTGAAGAATAAATACTATCCTATAAAGCCAATGCAACCTGTTGGCTTGTC
TTTTCTGACAGTTTTGTAAAATTCATTAACTTATTAAGTAAAATGAGCCA
AGTTCCTAAACCAAGAAGGTGGAGtgctatttttcctttttctattcTCC
CACCGTCTTCAGAATTTAATGAACTTTGTTGTCTTTCTTTGCAGATTACA
GAAGGAGAGCACAGTCGTTTTGTGGAAACGAGAGAAACAAAAGCTGATAG
GAACCATACATTCACGTGAGAAAGATATAGAAAAACAACTCGAGTCGACA
TCCAGCGAAGCCGATAACACGAAATATCGACTTGAGAAACGAATCGAGGA
ATTACAAAATAAACTTCGCAAAGAACACGTAAGGAACACTACAAAATCAA
CTATTCCAGCATCTGAGGGGCTCGTACTACGTCGAAATCTATTCCTCAAG
GAACGGCTTTACGTGGTAGCAGAAAGCGAGTTGAAAAAGCAGCAACAGTA
CTACGCGAATCTGTTCAAAGGGTTGAAGCGAGACCATGAAATTGCAAAAG
CAGCACACATGGAGTTATTCGCCGAAGGCAATAACGCCATAGAGACAGCC
ATTTTAGAAGAACCTAAATCGGCAAAAACGTTTTCAGACAGACTTAATCG
AATCGTGAAAGCCATTTTTGCGGGAAAGGTCACTGAGTTGAGATCGTCAT
TACCTGCCCACTACTTGGGCTACGAACTAAACAAGGGGAACAAAGAAAAA
CCTAAACCAACAGCCGAAAAGAAGAATAAAACAGATTTTATAGTCAAGTT
GTCGCCTGAGGAGGAGGCCAACTTGGATCGGACCGATCTTGGAAGCAGCC
TCATCAAATGGCGATTAAGCGAAACTGAGAACGTTCCAACACTTGGAAAA
CTGCTAAGAGACATCCAAAAAGAGCACCCAACCTTCATAGACGAgaaagg
aaaattgaaaattaaagaaGTGTCCAATTATTTCCCTACAATCTCACAAG
AGAAAATCACGCATTATTTTAGCCTGTTTTCCATGTGGGATGACAACGGT
GATTTCAGCCTGGACACCACAGAGATTCTACACAATCTACCAGGAATCTT
GGGGTATTTGTCGACAACGGAAGAGGTAGCAGATGCAGTTCGAGAGATCG
ATATCGATGAATCAGGGACTATTGATTTTTACGAGTTTCTGTTATTGATT
AAACTCTTACAAGACGGCGAAGGAAAATCGTCCTTCTTCCAGAAAAATGA
TTTCCTAAAAGTATCCAGTCAGTTGTCGGACTCGAACTCAAAAATATGCG
CGATACAATGAAAATATTGTGAACTTTATAATAATATAAACAAGTTTGGg
atgattttcatcaatttaTGTAGTATTTATGGTAGTAAAAGTAGTGATGT
TTATTTATGGCAGAAGGTTATTAagtgaaaaagaacaaaaaggtTTTGTC
TTTAAGCGACGTAATTcctgcaaaatatttcaaaatattttttatgtcgT
GCATAAAAATTGAGTAATAATTTCTCGTTGCCGTAAACCTTTTGAGTACA
gacaaattcttttttttttaagatttcccCTTCTCCCTTCTATTTTGCTT
ATTATTGAAGTGCTTGATAACATCAGCAAAAATTCTACCTCTCTCATTTT
GAAGAAAGCAGCTCCTGTCAACAAACTGTCACTCCCTGCTTGATGCTGAG
GTCCAACCCGTTCAAGCTGGAAAGAAAACACAAATAAAGAGGTCATAATG
TGTGAAGCTATAATAACATTGCGGAGATCATAGGTTATTGACctgaaatg
ttaaaaaaaaacctgtatAATATTTACACTAAACGTAATATCTTTTGACC
TTTCAGTTCACCTATATATCAAGATTTTTAGAAACTTGGATTCTTCTTGT
ATTTAAAGATTTCCATACGGATAAAAGATACCCAAACCTACCTCAAGAAT
TTCTGAAACCTCTTGTAAACCACCCTTCAAACTTTTGCAGCTTTTCATCA
AATATTTGACATCGTAAATTTTGGGGAAATATAATCTCAGCAAATCGAAA
AAATCCGATTCTTCTGGTGGTAAAGCTTGATTCATcaacaattttaacaa
atatcCAAAGTCATAACCGCTAAGAT Coding sequence (CDS) from alignment at scaffold_455:330088..333163+ >TCONS_00066422 ID=TCONS_00066422|Name=TCONS_00066422|organism=Clytia hemisphaerica|type=CDS|length=3396bp|location=Sequence derived from alignment at scaffold_455:330088..333163+ (Clytia hemisphaerica)
ATGacgacaaaatcttttcgacaGGTTTCCATTGACGAAAATAATGAAGA
GCTTTTTCAAGGCCCAGGATGGAAACATCTCAAAACATCAGTGGAAAACT
TACGTCAAAATTTCACGGTTCTGTGCGACTCCCTAGAAGTCATTTTCAAT
CTTGAAAACACAAAACTGATAGCAACCGGACGAGTGGAGATTCCGGACAC
TTCGAGACGCATATTGggtaaagaaaaacaatttgttGAGAAATTTCGTG
AAAAGTTGGATGCTGTGAAGTGTGTGGTCATTGAGGCGGGCGATAATGCG
CCTGAATACGCAAGTCTGTACATGTCACTGAATGAGCACGTTCAAAATGC
TATCAAAACTTTGTGCACGGAAGTGAAAGCCCAACTCACAATAAAAAGCA
AATCAACCgaagaaattttggctgaaaatcaaaaaatgatgtTGGATTTA
CAGAAGAAAGATAAAGAATTGATGGAGGAGTTGAAACGAAATGAGACAGT
CCTTGTGGAAAAGAGAACACTGACTGCCCGATGTAAAGTTCTGGAACAAC
AAATTGACGAGAAGAATACGCGAATACAACAATTACAGAAGGAGAGCACA
GTCGTTTTGTGGAAACGAGAGAAACAAAAGCTGATAGGAACCATACATTC
ACGTGAGAAAGATATAGAAAAACAACTCGAGTCGACATCCAGCGAAGCCG
ATAACACGAAATATCGACTTGAGAAACGAATCGAGGAATTACAAAATAAA
CTTCGCAAAGAACACGTAAGGAACACTACAAAATCAACTATTCCAGCATC
TGAGGGGCTCGTACTACGTCGAAATCTATTCCTCAAGGAACGGCTTTACG
TGGTAGCAGAAAGCGAGTTGAAAAAGCAGCAACAGTACTACGCGAATCTG
TTCAAAGGGTTGAAGCGAGACCATGAAATTGCAAAAGCAGCACACATGGA
GTTATTCGCCGAAGGCAATAACGCCATAGAGACAGCCATTTTAGAAGAAC
CTAAATCGGCAAAAACGTTTTCAGACAGACTTAATCGAATCGTGAAAGCC
ATTTTTGCGGGAAAGGTCACTGAGTTGAGATCGTCATTACCTGCCCACTA
CTTGGGCTACGAACTAAACAAGGGGAACAAAGAAAAACCTAAACCAACAG
CCGAAAAGAAGAATAAAACAGATTTTATAGTCAAGTTGTCGCCTGAGGAG
GAGGCCAACTTGGATCGGACCGATCTTGGAAGCAGCCTCATCAAATGGCG
ATTAAGCGAAACTGAGAACGTTCCAACACTTGGAAAACTGCTAAGAGACA
TCCAAAAAGAGCACCCAACCTTCATAGACGAgaaaggaaaattgaaaatt
aaagaaGTGTCCAATTATTTCCCTACAATCTCACAAGAGAAAATCACGCA
TTATTTTAGCCTGTTTTCCATGTGGGATGACAACGGTGATTTCAGCCTGG
ACACCACAGAGATTCTACACAATCTACCAGGAATCTTGGGGTATTTGTCG
ACAACGGAAGAGGTAGCAGATGCAGTTCGAGAGATCGATATCGATGAATC
AGGGACTATTGATTTTTACGAGTTTCTGTTATTGATTAAACTCTTACAAG
ACGGCGAAGGAAAATCGTCCTTCTTCCAGAAAAATGATTTCCTAAAAGTA
TCCAGTCAGTTGTCGGACTCGAACTCAAAAATATGCGCGATACAATGAAT
GacgacaaaatcttttcgacaGGTTTCCATTGACGAAAATAATGAAGAGC
TTTTTCAAGGCCCAGGATGGAAACATCTCAAAACATCAGTGGAAAACTTA
CGTCAAAATTTCACGGTTCTGTGCGACTCCCTAGAAGTCATTTTCAATCT
TGAAAACACAAAACTGATAGCAACCGGACGAGTGGAGATTCCGGACACTT
CGAGACGCATATTGggtaaagaaaaacaatttgttGAGAAATTTCGTGAA
AAGTTGGATGCTGTGAAGTGTGTGGTCATTGAGGCGGGCGATAATGCGCC
TGAATACGCAAGTCTGTACATGTCACTGAATGAGCACGTTCAAAATGCTA
TCAAAACTTTGTGCACGGAAGTGAAAGCCCAACTCACAATAAAAAGCAAA
TCAACCgaagaaattttggctgaaaatcaaaaaatgatgtTGGATTTACA
GAAGAAAGATAAAGAATTGATGGAGGAGTTGAAACGAAATGAGACAGTCC
TTGTGGAAAAGAGAACACTGACTGCCCGATGTAAAGTTCTGGAACAACAA
ATTGACGAGAAGAATACGCGAATACAACAATTACAGAAGGAGAGCACAGT
CGTTTTGTGGAAACGAGAGAAACAAAAGCTGATAGGAACCATACATTCAC
GTGAGAAAGATATAGAAAAACAACTCGAGTCGACATCCAGCGAAGCCGAT
AACACGAAATATCGACTTGAGAAACGAATCGAGGAATTACAAAATAAACT
TCGCAAAGAACACGTAAGGAACACTACAAAATCAACTATTCCAGCATCTG
AGGGGCTCGTACTACGTCGAAATCTATTCCTCAAGGAACGGCTTTACGTG
GTAGCAGAAAGCGAGTTGAAAAAGCAGCAACAGTACTACGCGAATCTGTT
CAAAGGGTTGAAGCGAGACCATGAAATTGCAAAAGCAGCACACATGGAGT
TATTCGCCGAAGGCAATAACGCCATAGAGACAGCCATTTTAGAAGAACCT
AAATCGGCAAAAACGTTTTCAGACAGACTTAATCGAATCGTGAAAGCCAT
TTTTGCGGGAAAGGTCACTGAGTTGAGATCGTCATTACCTGCCCACTACT
TGGGCTACGAACTAAACAAGGGGAACAAAGAAAAACCTAAACCAACAGCC
GAAAAGAAGAATAAAACAGATTTTATAGTCAAGTTGTCGCCTGAGGAGGA
GGCCAACTTGGATCGGACCGATCTTGGAAGCAGCCTCATCAAATGGCGAT
TAAGCGAAACTGAGAACGTTCCAACACTTGGAAAACTGCTAAGAGACATC
CAAAAAGAGCACCCAACCTTCATAGACGAgaaaggaaaattgaaaattaa
agaaGTGTCCAATTATTTCCCTACAATCTCACAAGAGAAAATCACGCATT
ATTTTAGCCTGTTTTCCATGTGGGATGACAACGGTGATTTCAGCCTGGAC
ACCACAGAGATTCTACACAATCTACCAGGAATCTTGGGGTATTTGTCGAC
AACGGAAGAGGTAGCAGATGCAGTTCGAGAGATCGATATCGATGAATCAG
GGACTATTGATTTTTACGAGTTTCTGTTATTGATTAAACTCTTACAAGAC
GGCGAAGGAAAATCGTCCTTCTTCCAGAAAAATGATTTCCTAAAAGTATC
CAGTCAGTTGTCGGACTCGAACTCAAAAATATGCGCGATACAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066422-exon-scaffold_455-1491911889:330088..330875 | TCONS_00066422-exon-scaffold_455-1491911889:330088..330875 | Clytia hemisphaerica | exon |
| TCONS_00066422-exon-scaffold_455-1510915933:330088..330875 | TCONS_00066422-exon-scaffold_455-1510915933:330088..330875 | Clytia hemisphaerica | exon |
| TCONS_00066422-exon-scaffold_455-1575043694:330088..330875 | TCONS_00066422-exon-scaffold_455-1575043694:330088..330875 | Clytia hemisphaerica | exon |
| TCONS_00066422-exon-scaffold_455-1491911889:331232..333163 | TCONS_00066422-exon-scaffold_455-1491911889:331232..333163 | Clytia hemisphaerica | exon |
| TCONS_00066422-exon-scaffold_455-1510915933:331232..333163 | TCONS_00066422-exon-scaffold_455-1510915933:331232..333163 | Clytia hemisphaerica | exon |
| TCONS_00066422-exon-scaffold_455-1575043694:331232..333163 | TCONS_00066422-exon-scaffold_455-1575043694:331232..333163 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_455 | supercontig | scaffold_455:330088..333163 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005509 | calcium ion binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005509 |
calcium ion binding |
Blast
BLAST of TCONS_00066422 vs. Swiss-Prot (Human)
Match: CNOT7 (CCR4-NOT transcription complex subunit 7 OS=Homo sapiens GN=CNOT7 PE=1 SV=3) HSP 1 Score: 97.8265 bits (242), Expect = 6.846e-22 Identity = 46/61 (75.41%), Postives = 54/61 (88.52%), Query Frame = -3
Query: 2533 SGYDFGYLLKLLMNQALPPEESDFFDLLRLYFPKIYDVKYLMKSCKSLKGGLQEVSEILEV 2715
SGYDFGYL+K+L N LP EE DFF++LRL+FP IYDVKYLMKSCK+LKGGLQEV+E LE+
Sbjct: 158 SGYDFGYLIKILTNSNLPEEELDFFEILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLEL 218
The following BLAST results are available for this feature:
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