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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066451 ID=TCONS_00066451|Name=TCONS_00066451|organism=Clytia hemisphaerica|type=transcript|length=1255bp
NGCATTTTGGTTGACTGGCTCATTCAAGTACAATCCAGATTTAGACTCCT
CCAAGAAACTTTATATTTGACAATCTACACAATCGACAGATTTCTTGCTA
AATGTGATGTCAGTCGATCAGAACTTCAACTGGTTGGTGTGACAGCTATG
CTTATTGCATCCAAATATGAAGAAATGTATGCTCCCGAAATCGGTGACTT
TGTTTACATCACAGACAATGCATATTCCAAGGTGAAAATCAGAGCAATGG
AACAGAAAATGTTGAAAGCTTGTGAATTCGACTTCAGCAACCCACTTGCC
CTGCATTTCCTGAGAAGAAATTCAAAGGCTGGAGCTGTTGATGCCACAAA
ACACACAATGGCAAAATATTTAATGGAATTAACACTAGTTGACTATGATA
TGGCAACTTTGTTACCGTCACAAATCGCTGCAGCTGCCAGCTACTTATCC
ACACAATTACTGGACAAAGAGAAAGCTGAATGGaCTCCAACGTTAGCACA
CTATAGCACTTATTCAGAAGCAGCCATCTTCCCAATCGTTTGTCAAATGG
CTAAGCTTGTGTTGACCATGAACATGGAAGGTTCGAAATATCAAGCAGTC
AAAAGTAAATACGCTGAAagcaaatttatgaaaattagcCGATACCCTGT
ACTGGTTGGACCTTACATGCGCGAATTGGCAGACCAAGTCGACAATGCTT
GAACCTTAAGATACTGGGATGGATTTTAAATGAGCTTTTTTATTTATGGA
AATTGCTTTAACAGATCTCAGCAGATCTTCAGTTTTATTTTGAGAAGAGG
GGTAAGTATTTCACTCCTTGGAAGTAGTGGGCACTTAAACATAACTCTAA
ACGTCAAACTTAGTCTCTATGACACTTTGTTGTATATTTTGTACATCCAA
TATGAATCCGATAATTGACAATTACTGAACTCAAACATTAAATCATTCTT
GCTAAATAAATACGGCCCATTTTCACCTTTCTGTTGGCCTGGCTGCACTT
GGTATTACTTAGTATTTAACAAAAATGTAAATATGATATAAAAGTTCAGG
TAGTATTTTTTATCCGTATGATGAACACCTTTTGTAAATAGATTCTtttg
aaaacatattttattgaaagaaaaataacacaaattaaaatttgataata
ttCAGCATTTGCTTAATTTAGTCCATGTTTCACAGAATGTAGTTGCCCCA
CGGGGAAGCAGTTAACGTCCACACTTCAGACAGgcaatatcaaaattcat
tgccg Run BLAST on NCBI transcript from alignment at scaffold_455:134235..135990- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066451 ID=TCONS_00066451|Name=TCONS_00066451|organism=Clytia hemisphaerica|type=transcript|length=1756bp|location=Sequence derived from alignment at scaffold_455:134235..135990- (Clytia hemisphaerica)
NGCATTTTGGTTGACTGGCTCATTCAAGTACAATCCAGATTTAGACTCCT
CCAAGAAACTTTATATTTGACAATCTACACAATCGACAGATTTCTTGCTG
TAAGTCTATTTTTTCTTCATAAGTTGCATAGCAAGTGCCCAAAAACAATT
CCAAAGTTAATTCAAAAGATAATTTTATTGCTTGTATTTTGTACATTAAA
CTCTATGTTAAGAACAGAAGTTGAATTAAATCAAACATTGTGTTTATAGA
TAATATCTTTCAAGCTTTTTTACTTAAAATTCCTTCCCCATATTATTAGA
AATGTGATGTCAGTCGATCAGAACTTCAACTGGTTGGTGTGACAGCTATG
CTTATTGCATCCAAATATGAAGAAATGTATGCTCCCGAAATCGGTGACTT
TGTTTACATCACAGACAATGCATATTCCAAGGTGAAAATCAGAGCAATGG
AACAGAAAATGTTGAAAGCTTGTGAATTCGACTTCAGCAACCCACTTGCC
CTGCATTTCCTGAGAAGAAATTCAAAGGCTGGAGCTGTAAGTATATAGTA
TAGATTTGCTTGATATACATGAACTCAGGCATTATATTGTCCTACTGGAG
ACGGTCATAGTTTTCTTAACAACGTAATAAAGTCCATACATTTTCTCAAC
TTTTCTTTTCACAACAAACAGGTTGATGCCACAAAACACACAATGGCAAA
ATATTTAATGGAATTAACACTAGTTGACTATGATATGGCAACTTTGTTAC
CGTCACAAATCGCTGCAGCTGCCAGCTACTTATCCACACAATTACTGGAC
AAAGAGAAAGCTGAATGGGTAAGACTTTCCTTTTCCATTTTAGAGCAGCG
TTTCTTGTTTTTCCCACAGGGGCAAACCTGGAAACCAAACTGCTACAGGT
CCAAGGTCTAAGTCGGGCATAAATTGATTTTCACAATAGTCGATTATTTC
AATGTGATATTACAAATCTTTATTTTCTTTATAGACTCCAACGTTAGCAC
ACTATAGCACTTATTCAGAAGCAGCCATCTTCCCAATCGTTTGTCAAATG
GCTAAGCTTGTGTTGACCATGAACATGGAAGGTTCGAAATATCAAGCAGT
CAAAAGTAAATACGCTGAAAGCAAATTTATGAAAATTAGCCGATACCCTG
TACTGGTTGGACCTTACATGCGCGAATTGGCAGACCAAGTCGACAATGCT
TGAACCTTAAGATACTGGGATGGATTTTAAATGAGCTTTTTTATTTATGG
AAATTGCTTTAACAGATCTCAGCAGATCTTCAGTTTTATTTTGAGAAGAG
GGGTAAGTATTTCACTCCTTGGAAGTAGTGGGCACTTAAACATAACTCTA
AACGTCAAACTTAGTCTCTATGACACTTTGTTGTATATTTTGTACATCCA
ATATGAATCCGATAATTGACAATTACTGAACTCAAACATTAAATCATTCT
TGCTAAATAAATACGGCCCATTTTCACCTTTCTGTTGGCCTGGCTGCACT
TGGTATTACTTAGTATTTAACAAAAATGTAAATATGATATAAAAGTTCAG
GTAGTATTTTTTATCCGTATGATGAACACCTTTTGTAAATAGATTCTTTT
GAAAACATATTTTATTGAAAGAAAAATAACACAAATTAAAATTTGATAAT
ATTCAGCATTTGCTTAATTTAGTCCATGTTTCACAGAATGTAGTTGCCCC
ACGGGGAAGCAGTTAACGTCCACACTTCAGACAGGCAATATCAAAATTCA
TTGCCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066451-exon-scaffold_455-1575043694:135892..135990 | TCONS_00066451-exon-scaffold_455-1575043694:135892..135990 | Clytia hemisphaerica | exon |
| TCONS_00066451-exon-scaffold_455-1575043694:135455..135691 | TCONS_00066451-exon-scaffold_455-1575043694:135455..135691 | Clytia hemisphaerica | exon |
| TCONS_00066451-exon-scaffold_455-1575043694:135173..135319 | TCONS_00066451-exon-scaffold_455-1575043694:135173..135319 | Clytia hemisphaerica | exon |
| TCONS_00066451-exon-scaffold_455-1575043694:134235..135006 | TCONS_00066451-exon-scaffold_455-1575043694:134235..135006 | Clytia hemisphaerica | exon |
| TCONS_00066451-exon-scaffold_455-1510915933:135892..135990 | TCONS_00066451-exon-scaffold_455-1510915933:135892..135990 | Clytia hemisphaerica | exon |
| TCONS_00066451-exon-scaffold_455-1510915933:135455..135691 | TCONS_00066451-exon-scaffold_455-1510915933:135455..135691 | Clytia hemisphaerica | exon |
| TCONS_00066451-exon-scaffold_455-1510915933:135173..135319 | TCONS_00066451-exon-scaffold_455-1510915933:135173..135319 | Clytia hemisphaerica | exon |
| TCONS_00066451-exon-scaffold_455-1510915933:134235..135006 | TCONS_00066451-exon-scaffold_455-1510915933:134235..135006 | Clytia hemisphaerica | exon |
| TCONS_00066451-exon-scaffold_455-1491911889:135892..135990 | TCONS_00066451-exon-scaffold_455-1491911889:135892..135990 | Clytia hemisphaerica | exon |
| TCONS_00066451-exon-scaffold_455-1491911889:135455..135691 | TCONS_00066451-exon-scaffold_455-1491911889:135455..135691 | Clytia hemisphaerica | exon |
| TCONS_00066451-exon-scaffold_455-1491911889:135173..135319 | TCONS_00066451-exon-scaffold_455-1491911889:135173..135319 | Clytia hemisphaerica | exon |
| TCONS_00066451-exon-scaffold_455-1491911889:134235..135006 | TCONS_00066451-exon-scaffold_455-1491911889:134235..135006 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_455 | supercontig | scaffold_455:134235..135990 - |
Blast
BLAST of TCONS_00066451 vs. Swiss-Prot (Human)
Match: CCNB1 (G2/mitotic-specific cyclin-B1 OS=Homo sapiens GN=CCNB1 PE=1 SV=1) HSP 1 Score: 261.922 bits (668), Expect = 5.741e-82 Identity = 127/229 (55.46%), Postives = 163/229 (71.18%), Query Frame = 1
Query: 4 ILVDWLIQVQSRFRLLQETLYLTIYTIDRFLAKCDVSRSELQLVGVTAMLIASKYEEMYAPEIGDFVYITDNAYSKVKIRAMEQKMLKACEFDFSNPLALHFLRRNSKAGAVDATKHTMAKYLMELTLVDYDMATLLPSQIAAAASYLSTQLLDKEKAEWTPTLAHYSTYSEAAIFPIVCQMAKLVLTMNMEGSKYQAVKSKYAESKFMKISRYPVLVGPYMRELADQV 690
IL+DWL+QVQ +FRLLQET+Y+T+ IDRF+ V + LQLVGVTAM IASKYEEMY PEIGDF ++TDN Y+K +IR ME K+L+A F PL LHFLRR SK G VD +HT+AKYLMELT++DYDM PSQIAA A L+ ++LD EWTPTL HY +Y+E ++ P++ +AK V+ +N +K+ VK+KYA SK KIS P L +++LA V
Sbjct: 204 ILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNCVPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTKHQIRQMEMKILRALNFGLGRPLPLHFLRRASKIGEVDVEQHTLAKYLMELTMLDYDMVHFPPSQIAAGAFCLALKILD--NGEWTPTLQHYLSYTEESLLPVMQHLAKNVVMVNQGLTKHMTVKNKYATSKHAKISTLPQLNSALVQDLAKAV 430
The following BLAST results are available for this feature:
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