TCONS_00066470 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066470
Unique NameTCONS_00066470
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length336

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066470 ID=TCONS_00066470|Name=TCONS_00066470|organism=Clytia hemisphaerica|type=transcript|length=336bp
ggagcgctattctGAAATTAATAATCTCAGACGCCGTTTGATAGTGAGAC
TCTGCCCCTCTCAGTTTTTCTCCTTGTCTAGTACACACTTAAACTTGACA
GAgtaaatatgataaaattcacTTGATTGTTGATTGACCATCCAGGACCA
GCCATTTAGTACGTACGCAGCGAAGGTGGATTTAGGCAAAACTGTACGTC
TTGGTAGGAGgtgtcaaaaatttggaaacactTTGCGTACGTGCTAAATG
GACGACCTCTGATAGATATACTAGGTCTAGAATATATTTTACTTATTTAC
ACATACATACAAATACTTTTAAATATCATTATCAAT
Run BLAST on NCBI

transcript from alignment at scaffold_455:30511..30846

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066470 ID=TCONS_00066470|Name=TCONS_00066470|organism=Clytia hemisphaerica|type=transcript|length=336bp|location=Sequence derived from alignment at scaffold_455:30511..30846 (Clytia hemisphaerica)
ATTGATAATGATATTTAAAAGTATTTGTATGTATGTGTAAATAAGTAAAA
TATATTCTAGACCTAGTATATCTATCAGAGGTCGTCCATTTAGCACGTAC
GCAAagtgtttccaaatttttgacacCTCCTACCAAGACGTACAGTTTTG
CCTAAATCCACCTTCGCTGCGTACGTACTAAATGGCTGGTCCTGGATGGT
CAATCAACAATCAAgtgaattttatcatatttacTCTGTCAAGTTTAAGT
GTGTACTAGACAAGGAGAAAAACTGAGAGGGGCAGAGTCTCACTATCAAA
CGGCGTCTGAGATTATTAATTTCagaatagcgctcc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041583XLOC_041583Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066470-exon-scaffold_455-1491911889:30511..30846TCONS_00066470-exon-scaffold_455-1491911889:30511..30846Clytia hemisphaericaexon
TCONS_00066470-exon-scaffold_455-1510915933:30511..30846TCONS_00066470-exon-scaffold_455-1510915933:30511..30846Clytia hemisphaericaexon
TCONS_00066470-exon-scaffold_455-1575043694:30511..30846TCONS_00066470-exon-scaffold_455-1575043694:30511..30846Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_455supercontigscaffold_455:30511..30846 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.544818	0.316293	0.618886	1.13015	1.19075	0.718294	0.672458	1.41241	1.45792	0.283018	0.372089	1.48629	1.35058	0.95174	0.851136	0	0.214942	0	0	0.81027	0.790443	0	0.291195	0.599849	1.33838	1.14913	0.817587	0.620111	0.631794
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066470 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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