TCONS_00066476 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066476
Unique NameTCONS_00066476
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length425

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066476 ID=TCONS_00066476|Name=TCONS_00066476|organism=Clytia hemisphaerica|type=transcript|length=425bp
TTCATATCATGAATTTAGGGGTCACTTGCGAAAAGTTATGAAATTTTCTG
GATATGGCTTTTTTTGACattcaaaataaaagtcaaatgAATATGTAAAG
TTGAAATGCATCACGGGTAGAAGATTTTCATagattatgtaatttttttg
atgaaaaaggtCAGCTGAATACTCTCTTGACGCTCAAACAGATCGATTGT
CGCCCACGTACCCCCGCATcctataaatcttttttttcctgATAATCCTA
ATCGCTTTCTACAATGAAAAAATTCGGATATTACGAAAAACCgataaaat
tgacttttattttgatttacgCCTTCTTCATAGCATTTGTTTTtaccatt
ttcaattttatgtttATGGATTATCCTTAAAATAAAGTCAAGAAAGTCAA
CAGAATTTATTTTCACTTAACTGTA
Run BLAST on NCBI

transcript from alignment at scaffold_455:166008..166432

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066476 ID=TCONS_00066476|Name=TCONS_00066476|organism=Clytia hemisphaerica|type=transcript|length=425bp|location=Sequence derived from alignment at scaffold_455:166008..166432 (Clytia hemisphaerica)
TACAGTTAAGTGAAAATAAATTCTGTTGACTTTCTTGACTTTATTTTAAG
GATAATCCATaaacataaaattgaaaatggtaAAAACAAATGCTATGAAG
AAGGcgtaaatcaaaataaaagtcaattttatcGGTTTTTCGTAATATCC
GAATTTTTTCATTGTAGAAAGCGATTAGGATTATcaggaaaaaaaagatt
tataggATGCGGGGGTACGTGGGCGACAATCGATCTGTTTGAGCGTCAAG
AGAGTATTCAGCTGacctttttcatcaaaaaaattacataatctATGAAA
ATCTTCTACCCGTGATGCATTTCAACTTTACATATTcatttgacttttat
tttgaatGTCAAAAAAAGCCATATCCAGAAAATTTCATAACTTTTCGCAA
GTGACCCCTAAATTCATGATATGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041589XLOC_041589Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066476-exon-scaffold_455-1491911889:166008..166432TCONS_00066476-exon-scaffold_455-1491911889:166008..166432Clytia hemisphaericaexon
TCONS_00066476-exon-scaffold_455-1510915933:166008..166432TCONS_00066476-exon-scaffold_455-1510915933:166008..166432Clytia hemisphaericaexon
TCONS_00066476-exon-scaffold_455-1575043694:166008..166432TCONS_00066476-exon-scaffold_455-1575043694:166008..166432Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_455supercontigscaffold_455:166008..166432 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.164249	0.160168	0.557913	0.909718	0.221499	0.875156	0	0.197693	0	0	0	0	0.109237	0.34033	0.0932659	0.100089	0.123301	0	0.6984	0	0	0	0.376649	0	0.176347	0.31477	0.225218	0	0.182303	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066476 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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