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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066479 ID=TCONS_00066479|Name=TCONS_00066479|organism=Clytia hemisphaerica|type=transcript|length=1551bp
AATTTGTCCTGACTTGGATAAGGACTACTTCTTCAAAAAAGAAACGTATG
TTTGGATCGCTGCACGAAGATCAAATCAACCAACGTCATGGTTTATTGTC
TATTATTCATCGCTTTCTACCTACCAATCGCATTGGTTGAATCGCTTAAC
CACACAGATATATCTCCATCAGAAAGTCCCGTCAAAACAAATACACCTAT
CCGCGTCGAACAAGGTTTAACAGTCAAAGAATTCTGTAAacttttatcta
aaaatttCCCAATGAGCCGATGCAAATGTCCCGATCTCGGACCAGTATGT
GGCGTTTTGAAAGAAACAGCTGACGAGCCTTCGAAACCAATTCCTGTTGT
ATGTGGGCCCATAGTGTACACAAAAGCAATAATCACAATCTCTTTAAGCG
CTCTTGGGATCTTGGGAAACATCATCGTCATCATTCTCAGTAAGAAGAAC
TGGAACTCCTCTGCCTTCTGCCATAAACTTATCGGGGCGCTTGCAATGGC
GGATCTCCTTTTCATCGTTTCAGTTGTTATCACCGAAGTACCGAAATTCT
GGACATGTCTGTGGATTTATGGTGAAATAACATGTAAATTTATTTACCCA
ATGACAAACATGACTGCAACTTTAGGTCTTGGTTTCGTTCTGATCATATC
AGTTGAAAGATATATTGGAATCACCTACCCATTCTCCAGAGGATTATCTT
CAACCGTCATCTACTCTCTGGTTGCCCTAAATGCCATTGTATCTACCGTT
TCCGTCATCCCAGCAAGCATTGTATTAAGTACACACAAAGAAGGACCTCA
AAATGAAAACGTTTGTAATGAAGTATGGAAGAGTCCAGGACATTCACGTA
TATACACTTGGGTATTGTTTGTAACATCATTTGCAGCTCCTGTCATTATC
ATTACAGTTCTCTACTTATTGAtgttattcaaattaaagaAAGCGACCAC
AAAATGTTTGGAGAAAATGACCAATGCTGATGATTCAATACAACTGAAAC
GAAAACGAGAAAATAAGCGTGTCACAGCTATCGTCATGTCTTTACTTGTT
GCCTTTGTTCTATTTGTTTCACCCAATCGAGTCTTTTGGATCATCAAAGA
TGAAGGCATCCTGGACAAGATTATGAAGGAGAATCGACAGACGACAGGCT
ACATCAATCTAGTCTGTGATACCGCTTATATCATCCATGCTGTGATCAAT
CCTTTCATATATTCAGTTGTCGACTCTAAATTCAGATCTTCTTTGAAACG
ATTGTTTACTAACCGCAAACCAGATCTATCTTACTCATCCAAAGGATATT
CATATAGAAAAGACAGTGCACGTATTACCACGGCAACCAGTTGTGGAAAT
TTATCTCAGGTCAGCGGTAATAGCAAAGTTGATGACGTTTAATAAGGAAC
AATGCTGTTAAATATATTCTGCCTAATATCTTTGGGTAGTAAAttgttat
atatatatattcatgttgtcatgtattttttattgtaaataGAAATCTAT
TCGGTGTATgtatatttttgtttgaagatATCATTAAAAGCCTATAAAAA
C Run BLAST on NCBI protein sequence of TCONS_00066479-protein >TCONS_00066479-protein ID=TCONS_00066479-protein|Name=TCONS_00066479-protein|organism=Clytia hemisphaerica|type=polypeptide|length=434bp
MVYCLLFIAFYLPIALVESLNHTDISPSESPVKTNTPIRVEQGLTVKEFC
KLLSKNFPMSRCKCPDLGPVCGVLKETADEPSKPIPVVCGPIVYTKAIIT
ISLSALGILGNIIVIILSKKNWNSSAFCHKLIGALAMADLLFIVSVVITE
VPKFWTCLWIYGEITCKFIYPMTNMTATLGLGFVLIISVERYIGITYPFS
RGLSSTVIYSLVALNAIVSTVSVIPASIVLSTHKEGPQNENVCNEVWKSP
GHSRIYTWVLFVTSFAAPVIIITVLYLLMLFKLKKATTKCLEKMTNADDS
IQLKRKRENKRVTAIVMSLLVAFVLFVSPNRVFWIIKDEGILDKIMKENR
QTTGYINLVCDTAYIIHAVINPFIYSVVDSKFRSSLKRLFTNRKPDLSYS
SKGYSYRKDSARITTATSCGNLSQVSGNSKVDDV Run BLAST on NCBI transcript from alignment at scaffold_455:183998..185548 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066479 ID=TCONS_00066479|Name=TCONS_00066479|organism=Clytia hemisphaerica|type=transcript|length=1551bp|location=Sequence derived from alignment at scaffold_455:183998..185548 (Clytia hemisphaerica)
GTTTTTATAGGCTTTTAATGATatcttcaaacaaaaatatacATACACCG
AATAGATTTCtatttacaataaaaaatacatgacaacatgaatatatata
tataacaaTTTACTACCCAAAGATATTAGGCAGAATATATTTAACAGCAT
TGTTCCTTATTAAACGTCATCAACTTTGCTATTACCGCTGACCTGAGATA
AATTTCCACAACTGGTTGCCGTGGTAATACGTGCACTGTCTTTTCTATAT
GAATATCCTTTGGATGAGTAAGATAGATCTGGTTTGCGGTTAGTAAACAA
TCGTTTCAAAGAAGATCTGAATTTAGAGTCGACAACTGAATATATGAAAG
GATTGATCACAGCATGGATGATATAAGCGGTATCACAGACTAGATTGATG
TAGCCTGTCGTCTGTCGATTCTCCTTCATAATCTTGTCCAGGATGCCTTC
ATCTTTGATGATCCAAAAGACTCGATTGGGTGAAACAAATAGAACAAAGG
CAACAAGTAAAGACATGACGATAGCTGTGACACGCTTATTTTCTCGTTTT
CGTTTCAGTTGTATTGAATCATCAGCATTGGTCATTTTCTCCAAACATTT
TGTGGTCGCTTtctttaatttgaataacaTCAATAAGTAGAGAACTGTAA
TGATAATGACAGGAGCTGCAAATGATGTTACAAACAATACCCAAGTGTAT
ATACGTGAATGTCCTGGACTCTTCCATACTTCATTACAAACGTTTTCATT
TTGAGGTCCTTCTTTGTGTGTACTTAATACAATGCTTGCTGGGATGACGG
AAACGGTAGATACAATGGCATTTAGGGCAACCAGAGAGTAGATGACGGTT
GAAGATAATCCTCTGGAGAATGGGTAGGTGATTCCAATATATCTTTCAAC
TGATATGATCAGAACGAAACCAAGACCTAAAGTTGCAGTCATGTTTGTCA
TTGGGTAAATAAATTTACATGTTATTTCACCATAAATCCACAGACATGTC
CAGAATTTCGGTACTTCGGTGATAACAACTGAAACGATGAAAAGGAGATC
CGCCATTGCAAGCGCCCCGATAAGTTTATGGCAGAAGGCAGAGGAGTTCC
AGTTCTTCTTACTGAGAATGATGACGATGATGTTTCCCAAGATCCCAAGA
GCGCTTAAAGAGATTGTGATTATTGCTTTTGTGTACACTATGGGCCCACA
TACAACAGGAATTGGTTTCGAAGGCTCGTCAGCTGTTTCTTTCAAAACGC
CACATACTGGTCCGAGATCGGGACATTTGCATCGGCTCATTGGGaaattt
ttagataaaagtTTACAGAATTCTTTGACTGTTAAACCTTGTTCGACGCG
GATAGGTGTATTTGTTTTGACGGGACTTTCTGATGGAGATATATCTGTGT
GGTTAAGCGATTCAACCAATGCGATTGGTAGGTAGAAAGCGATGAATAAT
AGACAATAAACCATGACGTTGGTTGATTTGATCTTCGTGCAGCGATCCAA
ACATACGTTTCTTTTTTGAAGAAGTAGTCCTTATCCAAGTCAGGACAAAT
T Coding sequence (CDS) from alignment at scaffold_455:183998..185548 >TCONS_00066479 ID=TCONS_00066479|Name=TCONS_00066479|organism=Clytia hemisphaerica|type=CDS|length=1305bp|location=Sequence derived from alignment at scaffold_455:183998..185548 (Clytia hemisphaerica)
TTAAACGTCATCAACTTTGCTATTACCGCTGACCTGAGATAAATTTCCAC
AACTGGTTGCCGTGGTAATACGTGCACTGTCTTTTCTATATGAATATCCT
TTGGATGAGTAAGATAGATCTGGTTTGCGGTTAGTAAACAATCGTTTCAA
AGAAGATCTGAATTTAGAGTCGACAACTGAATATATGAAAGGATTGATCA
CAGCATGGATGATATAAGCGGTATCACAGACTAGATTGATGTAGCCTGTC
GTCTGTCGATTCTCCTTCATAATCTTGTCCAGGATGCCTTCATCTTTGAT
GATCCAAAAGACTCGATTGGGTGAAACAAATAGAACAAAGGCAACAAGTA
AAGACATGACGATAGCTGTGACACGCTTATTTTCTCGTTTTCGTTTCAGT
TGTATTGAATCATCAGCATTGGTCATTTTCTCCAAACATTTTGTGGTCGC
TTtctttaatttgaataacaTCAATAAGTAGAGAACTGTAATGATAATGA
CAGGAGCTGCAAATGATGTTACAAACAATACCCAAGTGTATATACGTGAA
TGTCCTGGACTCTTCCATACTTCATTACAAACGTTTTCATTTTGAGGTCC
TTCTTTGTGTGTACTTAATACAATGCTTGCTGGGATGACGGAAACGGTAG
ATACAATGGCATTTAGGGCAACCAGAGAGTAGATGACGGTTGAAGATAAT
CCTCTGGAGAATGGGTAGGTGATTCCAATATATCTTTCAACTGATATGAT
CAGAACGAAACCAAGACCTAAAGTTGCAGTCATGTTTGTCATTGGGTAAA
TAAATTTACATGTTATTTCACCATAAATCCACAGACATGTCCAGAATTTC
GGTACTTCGGTGATAACAACTGAAACGATGAAAAGGAGATCCGCCATTGC
AAGCGCCCCGATAAGTTTATGGCAGAAGGCAGAGGAGTTCCAGTTCTTCT
TACTGAGAATGATGACGATGATGTTTCCCAAGATCCCAAGAGCGCTTAAA
GAGATTGTGATTATTGCTTTTGTGTACACTATGGGCCCACATACAACAGG
AATTGGTTTCGAAGGCTCGTCAGCTGTTTCTTTCAAAACGCCACATACTG
GTCCGAGATCGGGACATTTGCATCGGCTCATTGGGaaatttttagataaa
agtTTACAGAATTCTTTGACTGTTAAACCTTGTTCGACGCGGATAGGTGT
ATTTGTTTTGACGGGACTTTCTGATGGAGATATATCTGTGTGGTTAAGCG
ATTCAACCAATGCGATTGGTAGGTAGAAAGCGATGAATAATAGACAATAA
ACCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066479-exon-scaffold_455-1491911889:183998..185548 | TCONS_00066479-exon-scaffold_455-1491911889:183998..185548 | Clytia hemisphaerica | exon |
| TCONS_00066479-exon-scaffold_455-1510915933:183998..185548 | TCONS_00066479-exon-scaffold_455-1510915933:183998..185548 | Clytia hemisphaerica | exon |
| TCONS_00066479-exon-scaffold_455-1575043694:183998..185548 | TCONS_00066479-exon-scaffold_455-1575043694:183998..185548 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_455 | supercontig | scaffold_455:183998..185548 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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