TCONS_00066483 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066483
Unique NameTCONS_00066483
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length251

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066483 ID=TCONS_00066483|Name=TCONS_00066483|organism=Clytia hemisphaerica|type=transcript|length=251bp
AGATTTCATCGATGGCGAGTTTAATGTATTTCGACGGTATCTGGTCATGG
CCGGTTGAGCAGTCGTTTCGAAGATTACATAAGGCTTTACGAACATCAGC
GTAGGAAACTTCGTTTATGTCGAATGGATTGTCTTGTGCAGGTAATTCAT
TGATGAGTTGATGTAGGATTTGCTCTGATTTAGGTTTTGAGTTAAGAAGT
CTCCCGGCTGTTGTGTTGAAGTGGACATTGAGTGTGTCGGGGTCAGCGGA
N
Run BLAST on NCBI

transcript from alignment at scaffold_455:394560..394810

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066483 ID=TCONS_00066483|Name=TCONS_00066483|organism=Clytia hemisphaerica|type=transcript|length=251bp|location=Sequence derived from alignment at scaffold_455:394560..394810 (Clytia hemisphaerica)
NTCCGCTGACCCCGACACACTCAATGTCCACTTCAACACAACAGCCGGGA
GACTTCTTAACTCAAAACCTAAATCAGAGCAAATCCTACATCAACTCATC
AATGAATTACCTGCACAAGACAATCCATTCGACATAAACGAAGTTTCCTA
CGCTGATGTTCGTAAAGCCTTATGTAATCTTCGAAACGACTGCTCAACCG
GCCATGACCAGATACCGTCGAAATACATTAAACTCGCCATCGATGAAATC
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041596XLOC_041596Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066483-exon-scaffold_455-1491911889:394560..394810TCONS_00066483-exon-scaffold_455-1491911889:394560..394810Clytia hemisphaericaexon
TCONS_00066483-exon-scaffold_455-1510915933:394560..394810TCONS_00066483-exon-scaffold_455-1510915933:394560..394810Clytia hemisphaericaexon
TCONS_00066483-exon-scaffold_455-1575043694:394560..394810TCONS_00066483-exon-scaffold_455-1575043694:394560..394810Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_455supercontigscaffold_455:394560..394810 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.77306	4.41519	7.68968	11.7027	5.08818	2.41245	5.82103	6.35784	3.17948	8.55135	6.18766	4.84056	3.24404	6.90998	2.99945	1.15708	1.69945	1.56644	7.36468	5.87588	2.9184	7.47335	0	2.35984	4.53224	5.06154	10.3472	4.41713	10.8883	5.12004
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066483 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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