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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066486 ID=TCONS_00066486|Name=TCONS_00066486|organism=Clytia hemisphaerica|type=transcript|length=1599bp
TGCGTATCAAGAACACAATAAGAATATTACAAGTCTGATGATCTTAAAAA
GATGAGTTAGAAGAGTCGAGCCTCAGCCAAATTTTACCAGTTGTTTTTAA
TAGACAGGTAAATTTACTTTGAAGTCAAAACAAGAAACGTCTGCGAACGG
AATTAAGGGTACCAAACATCAAATATATacatcaaaaaaggaaaaaataa
taaattagaGTTAACCAGACAAAAATCCTTCCTAGTTCTTAAAGTTTTAT
AAAAGCAACGTCTTTTTGTTACGTCCGCCACTATCTGTCAAAAGCGTTTC
CTTTTGGTGTTATGCCAACAAAGAAACTCGCATGACGCCGTGATTTCCCT
AGGCTTGACATCTGGCCGGCTGCCTCCTCCCCTTAAACGAACCTCATGTT
TGATTGCTTTTATACAAAAcaacatgaaattttgagacAAAAGTCATTTG
GCTATAATAGATCTTCGCGACAGATTAACAAGAATATGAGATAGGATTAC
AAAGATACTAATTCAATGACAGGCTTAAAATTAGAAGGGCTCATTTTCTA
AATACAGTCTTACTTGATGAATAATTAATTTGTCAAATCATCAACCTTTA
CATTATATCAAAGTCCCTAAAATTTGTTGGgaattttaaagctattttaa
atacctaaaaactaaaaattgtgtCTTTTAAAAATAAGATCTTCTCTAAG
GTAAGGTAATATACATATAGTTTAATATTAATCTTGATTTTCATTAAATA
cgatatttcaaattatttagaaaaagagagagagagaaactTGGCTAGGT
TCAAGCGACGACTCATCAAAACAACAACCCTACCTCATTTCGCAATGTCT
CCGAAAAAAACAACAGAGGAGTTGGGTAAGACGATTTTGGCGGATGATCC
AAGCCGAAAACAATAGATAAAGATTATGAATAAAGAGAGACAAGAAGCCA
ATCTATGTTTACTTCAAAGTTCGCAAATAAAAAAGTAAGGTTACTATTGA
ACGTTGAACAgcttattttgagagtttcacaaaaacattatcTCTCTCTA
TCTCGGCTATGAAACAAAGAAAGTGGGTACGCGATTAGGGGGAATTAGAA
AAGGCTAAAATGGCTTCATAGCTTGTAAAGCCAAACTTCGTTCCTTCTAT
ATCAAAACACTTAATCCAATTTACTCTCATCTCTTCTTAAATCCTACTGG
AGAGAGGCAAGGTGTGTGGCTTTAATGTAAGAATAGAAAAACCGAATACA
AAAGAACTTTACAGAACACCGTATGCAATGATTCCTAGCCCTTGTTTTAG
TTTGACAATAAAAAAGTTAGAATTTTCATTGTAAACGCAGAAAATTCGTG
TGTTatggaaaaaaagttaaaattgagACTGTCTTTCTCATTCGGGACAC
CTAAAACATATGTTTTGAGAAGCAAGCGTGTACACCGAACACCACACCTT
TTAACTCCCTCCTGACCTAGACAGGAATCTTTAAAATAGATTAAANGAAA
ATTGGTGTGTTatggaaaaaaagttaaaactttttcattCGGGACACCTA
AAACATATGTTTTGAGAAGCAAGCGTATACACCGAACACCACACCTTTT Run BLAST on NCBI transcript from alignment at scaffold_455:492306..493904 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066486 ID=TCONS_00066486|Name=TCONS_00066486|organism=Clytia hemisphaerica|type=transcript|length=1599bp|location=Sequence derived from alignment at scaffold_455:492306..493904 (Clytia hemisphaerica)
AAAAGGTGTGGTGTTCGGTGTATACGCTTGCTTCTCAAAACATATGTTTT
AGGTGTCCCGaatgaaaaagttttaactttttttccatAACACACCAATT
TTCNTTTAATCTATTTTAAAGATTCCTGTCTAGGTCAGGAGGGAGTTAAA
AGGTGTGGTGTTCGGTGTACACGCTTGCTTCTCAAAACATATGTTTTAGG
TGTCCCGAATGAGAAAGACAGTctcaattttaactttttttccatAACAC
ACGAATTTTCTGCGTTTACAATGAAAATTCTAACTTTTTTATTGTCAAAC
TAAAACAAGGGCTAGGAATCATTGCATACGGTGTTCTGTAAAGTTCTTTT
GTATTCGGTTTTTCTATTCTTACATTAAAGCCACACACCTTGCCTCTCTC
CAGTAGGATTTAAGAAGAGATGAGAGTAAATTGGATTAAGTGTTTTGATA
TAGAAGGAACGAAGTTTGGCTTTACAAGCTATGAAGCCATTTTAGCCTTT
TCTAATTCCCCCTAATCGCGTACCCACTTTCTTTGTTTCATAGCCGAGAT
AGAGAGAgataatgtttttgtgaaactctcaaaataagcTGTTCAACGTT
CAATAGTAACCTTACTTTTTTATTTGCGAACTTTGAAGTAAACATAGATT
GGCTTCTTGTCTCTCTTTATTCATAATCTTTATCTATTGTTTTCGGCTTG
GATCATCCGCCAAAATCGTCTTACCCAACTCCTCTGTTGTTTTTTTCGGA
GACATTGCGAAATGAGGTAGGGTTGTTGTTTTGATGAGTCGTCGCTTGAA
CCTAGCCAagtttctctctctctctttttctaaataatttgaaatatcgT
ATTTAATGAAAATCAAGATTAATATTAAACTATATGTATATTACCTTACC
TTAGAGAAGATCTTATTTTTAAAAGacacaatttttagtttttaggtatt
taaaatagctttaaaattcCCAACAAATTTTAGGGACTTTGATATAATGT
AAAGGTTGATGATTTGACAAATTAATTATTCATCAAGTAAGACTGTATTT
AGAAAATGAGCCCTTCTAATTTTAAGCCTGTCATTGAATTAGTATCTTTG
TAATCCTATCTCATATTCTTGTTAATCTGTCGCGAAGATCTATTATAGCC
AAATGACTTTTgtctcaaaatttcatgttgTTTTGTATAAAAGCAATCAA
ACATGAGGTTCGTTTAAGGGGAGGAGGCAGCCGGCCAGATGTCAAGCCTA
GGGAAATCACGGCGTCATGCGAGTTTCTTTGTTGGCATAACACCAAAAGG
AAACGCTTTTGACAGATAGTGGCGGACGTAACAAAAAGACGTTGCTTTTA
TAAAACTTTAAGAACTAGGAAGGATTTTTGTCTGGTTAACtctaatttat
tattttttccttttttgatgtATATATTTGATGTTTGGTACCCTTAATTC
CGTTCGCAGACGTTTCTTGTTTTGACTTCAAAGTAAATTTACCTGTCTAT
TAAAAACAACTGGTAAAATTTGGCTGAGGCTCGACTCTTCTAACTCATCT
TTTTAAGATCATCAGACTTGTAATATTCTTATTGTGTTCTTGATACGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066486-exon-scaffold_455-1491911889:492306..493904 | TCONS_00066486-exon-scaffold_455-1491911889:492306..493904 | Clytia hemisphaerica | exon |
| TCONS_00066486-exon-scaffold_455-1510915933:492306..493904 | TCONS_00066486-exon-scaffold_455-1510915933:492306..493904 | Clytia hemisphaerica | exon |
| TCONS_00066486-exon-scaffold_455-1575043694:492306..493904 | TCONS_00066486-exon-scaffold_455-1575043694:492306..493904 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_455 | supercontig | scaffold_455:492306..493904 . |
Blast
The following BLAST results are available for this feature:
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