|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066498 ID=TCONS_00066498|Name=TCONS_00066498|organism=Clytia hemisphaerica|type=transcript|length=4235bpRun BLAST on NCBI protein sequence of TCONS_00066498-protein >TCONS_00066498-protein ID=TCONS_00066498-protein|Name=TCONS_00066498-protein|organism=Clytia hemisphaerica|type=polypeptide|length=524bp MNEVNKNITSSLYNLYYEAYTFSSNLTENVSIQDESFPGEYQRFITSIKPRun BLAST on NCBI transcript from alignment at scaffold_456:343900..370378+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00066498 ID=TCONS_00066498|Name=TCONS_00066498|organism=Clytia hemisphaerica|type=transcript|length=26479bp|location=Sequence derived from alignment at scaffold_456:343900..370378+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_456:343900..370378+ >TCONS_00066498 ID=TCONS_00066498|Name=TCONS_00066498|organism=Clytia hemisphaerica|type=CDS|length=17325bp|location=Sequence derived from alignment at scaffold_456:343900..370378+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00066498 vs. Swiss-Prot (Human)
Match: AREL1 (Apoptosis-resistant E3 ubiquitin protein ligase 1 OS=Homo sapiens GN=AREL1 PE=1 SV=3) HSP 1 Score: 472.241 bits (1214), Expect = 4.234e-147 Identity = 251/583 (43.05%), Postives = 359/583 (61.58%), Query Frame = 3
Query: 2550 LTLDSSGVYTVDVFYENEALSQG-VTLLVLTEQEMNEVNKNITSSLYNLYYEAYTFSSNLTENVSIQDESFPGEY-----QRFITSIKPEDGTKKKKV------------YCYISSKFFTVKEFYMKIFEKRKQVVRIKPSVKIVLHCNDPENGVGPGFTVHAPFETPITVYCARRNVLVGTFIKLLLRNVGGSEKFEDKKRHFQSVLES--NAPSHSTITLKVKRDQLLKDSMQATKNFNKNDWSKKFLIKFDGEEGLDYGGLSREWFTLVLDQLFNNRGGLFQRFNKENPQALIHPNPQRTENYQKLKLYEFAGQMVGKCLVECACGRSRQQYVKARFTRSFLAQILGLRVSWKHFETDDKPLYIGKIKYILENDPEGLDIFFSEDVYDSEDRLIKTVDLKSNGSQMEVSESNKMEYIQLVAEYRLQESVKQEITGFIKGLHSIIDDGLLSIFDENELELLMCGMDNISVSDMKQHCDAPNNN------LMNQFWSILSGFSQEELSRLLQFITGSAQLPPEGFAGLLPKLRITFTYTRDQLPSSHTCSNHLVLSSYNNMDEFRRKLVYAITEGCEGFGMI 4220
LTL S G + + Y+N+ ++ G ++VL+E E N V +N+++S ++Y+EAY +++ N S P + +R T++ ED + YCY+S K F+VKEFY+KI R R+ P K DP + + V + P+ + C RN+L TFI+ L +N+GGSE F+DK FQ L HS +TLKV R LL+ S++AT+NF+ +DWSK F + F EE LD+GG REWF L+ LF+ LF RF+ N QAL+HPNP R + +LK+YEFAG++VGKCL E + G + +Q V+ARFTRSFLAQI+GLR+ +K+FETDD Y K+ +IL ND +++ F+E+ Y+ +L K V+L + G+Q V+ +NK+ Y+ L+A+YRL VK+E+ F+KGL+ ++ + LL+IFDENELELLMCG +ISVSD K H + +M FW+++S +QEEL+RLLQF TGS+QLPP GFA L P +I T LP++HTC N L L +Y++ +E R L AI+EGCEGFGM+
Sbjct: 247 LTLHSRGCFHACISYQNQPINNGEFDIIVLSEDEKNIVERNVSTSGVSIYFEAYLYNAT---NCSSTPWHLPPMHMTSSQRRPSTAVDEEDEDSPSECHTPEKVKKPKKVYCYVSPKQFSVKEFYLKIIPWRLYTFRVCPGTKFSYLGPDPVHKLL-TLVVDDGIQPPVELSCKERNILAATFIRSLHKNIGGSETFQDKVNFFQRELRQVHMKRPHSKVTLKVSRHALLESSLKATRNFSISDWSKNFEVVFQDEEALDWGGPRREWFELICKALFDTTNQLFTRFSDNN-QALVHPNPNRPAHL-RLKMYEFAGRLVGKCLYESSLGGAYKQLVRARFTRSFLAQIIGLRMHYKYFETDDPEFYKSKVCFILNNDMSEMELVFAEEKYNKSGQLDKVVELMTGGAQTPVTNANKIFYLNLLAQYRLASQVKEEVEHFLKGLNELVPENLLAIFDENELELLMCGTGDISVSDFKAHAVVVGGSWHFREKVMRWFWTVVSSLTQEELARLLQFTTGSSQLPPGGFAALCPSFQIIAAPTHSTLPTAHTCFNQLCLPTYDSYEEVHRMLQLAISEGCEGFGML 823 The following BLAST results are available for this feature:
BLAST of TCONS_00066498 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.