TCONS_00066524 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066524
Unique NameTCONS_00066524
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length885

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066524 ID=TCONS_00066524|Name=TCONS_00066524|organism=Clytia hemisphaerica|type=transcript|length=885bp
GCAACCATGTTGAGAGTTTTGATAACCATTGCTTTACTTGGCGTTGCTTC
TGCAGCTGTTTCAACCAAGATCGCCAACTGGTGGACTACATTTGATCATG
GTGGTTGGTCCAAATGTGCTGATGGCCATTTCCTGACTGGTATGTGGAGA
AGTGCTCGTCAGCTTGGAGATGAAAGAATCGGCAGAATCGAACAAGGAGA
TTGTAAAAGTGCTGACAGTGCATATACCGGAGATTGCAAACAAATGGATT
GCTACAAGCTGAATATCTGGtcaattttcgacaaaaaaggTTGGGCAACA
TGCAAACCTGGCTACTTTATCCAATCCATCTTTTCCACCAAAGGAAAAGG
CCTTCACAACATCGAGGAATTCCAATGCTGTAAACCAAGATCTAAGAAAG
TCAAGCAAGGTCAATGCTACATCCAAAATGTCTGGAAATCCTTTGACAAC
AAAGGTTGGTCTAAATGCAAAGCTGGATATTACATGCAAGGTATGTTCAG
AAACAGCTGTGACCAATTGTATTGTCTCGAAGAATTCAGATGCTGTAGCA
TGAAACAAAAATGTTGAGAGACCTAGAGACATTATGGAGAATatagtatt
tctttttcatcttcaatcttATAAGGCGTTTAGGGGAATGAGTATTTAGA
ATTTCAATAGTCGATTTGTAGATCATTTACCAAATATTTTATCACTTGTA
CTTCACTATGAGCTTTTTTCTCACAATAGATTTACTGACTTGcattcaaa
aaatacaaaaagtttcTTTGATACTTTTCACATCCCCGTCAATACTCCaa
taaaaacacccccttctcacagacccactgggaccccttcccacttggcc
aaaatatcgtccccttTGGAGAactatcctccaat
Run BLAST on NCBI

transcript from alignment at scaffold_456:755766..757154+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066524 ID=TCONS_00066524|Name=TCONS_00066524|organism=Clytia hemisphaerica|type=transcript|length=1389bp|location=Sequence derived from alignment at scaffold_456:755766..757154+ (Clytia hemisphaerica)
GCAACCATGTTGAGAGTTTTGATAACCATTGCTTTACTTGGCGTTGCTTC
TGCAGCTGTTTCAACCAAGATCGCCAACTGGTGGACTACATTTGATCATG
GTGGTTGGTCCAAATGTGCTGATGGCCATTTCCTGACTGGTATGTGGAGA
AGTGCTCGTCAGCTTGGAGATGAAAGAATCGGCAGAATCGAACAAGGAGA
TTGTAAAAGTGCTGACAGTGCATATACCGGAGATTGCAAACAAATGGATT
GCTACAAGCTGAATATCTGGtcaattttcgacaaaaaaggTTGGGCAACA
TGCAAACCTGGCTACTTTATCCAATCCATCTTTTCCACCAAAGGAAAAGG
CCTTCACAACATCGAGGAATTCCAATGCTGTAAACCAAGATCTAAGAAAG
TCAAGCAAGGTCAATGCTACATCCAAAACGTTTGGAAATCCTTTGACAAC
AAAGGTTGGTCTAAATGCAAAGCTGGATATTACATGCAAGGTATGTTCAG
AAACAGCTGTGACAAATTGTATTGTCTTGAGGAATTCAAATGCTGTAATA
TGGTCGCTACAGACTCGTCTGTCTCAACCAAGATTGCCAACTGGTGGAGT
ACATTCGACCATGGTGGTTGGTCCAAATGTGCTGCTGGACATTTCCTGAC
TGGTATGTGGAGAAGTCCTCGTCAGATTGGAGATGAAAGAATCGGCAGAA
TCGAACAAGGAGATTGTAAATCTGCACCAAAGAATCTTGGATCTGGACAA
GAATGCTACAAATTGAATATCTGGtcaattttcgacaaaaaaggATGGGC
AAATTGCAAACCTGGTTATTACATGCAGTCTATCTACTCCACCAAAGGAA
AGGGCCTCCACCATATTGAGGAATTCCAATGTTGCAGACCAAGCGGAGGG
GTGACAGTTGATGGTCAATGCTACATCCAAAATGTCTGGAAATCCTTTGA
CAACAAAGGTTGGTCTAAATGCAAAGCTGGATATTACATGCAAGGTATGT
TCAGAAACAGCTGTGACCAATTGTATTGTCTCGAAGAATTCAGATGCTGT
AGCATGAAACAAAAATGTTGAGAGACCTAGAGACATTATGGAGAATatag
tatttctttttcatcttcaatcttATAAGGCGTTTAGGGGAATGAGTATT
TAGAATTTCAATAGTCGATTTGTAGATCATTTACCAAATATTTTATCACT
TGTACTTCACTATGAGCTTTTTTCTCACAATAGATTTACTGACTTGcatt
caaaaaatacaaaaagtttcTTTGATACTTTTCACATCCCCGTCAATACT
CCaataaaaacacccccttctcacagacccactgggaccccttcccactt
ggccaaaatatcgtccccttTGGAGAactatcctccaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041618XLOC_041618Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066524-exon-scaffold_456-1491911889:755766..756185TCONS_00066524-exon-scaffold_456-1491911889:755766..756185Clytia hemisphaericaexon
TCONS_00066524-exon-scaffold_456-1510915933:755766..756185TCONS_00066524-exon-scaffold_456-1510915933:755766..756185Clytia hemisphaericaexon
TCONS_00066524-exon-scaffold_456-1575043694:755766..756185TCONS_00066524-exon-scaffold_456-1575043694:755766..756185Clytia hemisphaericaexon
TCONS_00066524-exon-scaffold_456-1491911889:756690..757154TCONS_00066524-exon-scaffold_456-1491911889:756690..757154Clytia hemisphaericaexon
TCONS_00066524-exon-scaffold_456-1510915933:756690..757154TCONS_00066524-exon-scaffold_456-1510915933:756690..757154Clytia hemisphaericaexon
TCONS_00066524-exon-scaffold_456-1575043694:756690..757154TCONS_00066524-exon-scaffold_456-1575043694:756690..757154Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_456supercontigscaffold_456:755766..757154 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	1.68755	1.25836	46.3938	12.4987	34.8243	68.6922	27.5442	27.1292	155.182	132.995	11.1515	15.3799	32.5868	31.6349	0	0.151604	0	0	0	0	0	0	0	0.0596217
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066524 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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