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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066529 ID=TCONS_00066529|Name=TCONS_00066529|organism=Clytia hemisphaerica|type=transcript|length=572bp
CAGGTCGATGATACATCTGAGAACAACAACACTGTCGATAGTAGCGATGG
ACTTTTCAATGATGCGATCACAAATTATTTGAACGCTTTGAAAGTAAGCG
AACGACGTGCCGAGAGTGTTTTACAAGAGTCAAAAGAAAtcgtttctttt
gttgaaaattCGAACAGAAAGACATCAACAGAGGAATTGCTGAAGAGAAA
ATTGCAAGAAGAATTATACatcgaaaatgaagatttaattTCATTACGTA
ACACTGTTTTGAAAGACTTGGAGAAAGAAGAGGAAGAAGAGAACCACGTG
GCTGTCAAACAGGAGAAGAATGATGATACCGTTACTACCGCTACAAGTGA
GGAAGAAACTATTGATGAGATCAAAACATTGGAAGAACAAACAGAAAAAG
AACTGAACGAGTTGACggaaaaacaaaatgaagaagCTGAATCTAAAagG
AAAGTCACAGAAAAGCTTCGTAAAGAGTCTATCGTCAACGACCTTCTAAA
CGAAGAAAAAAGACGAAAACATCAAAGCTTGATCGAGATATTTCGCACGA
AGCAGGAGGAAGAGCAACAGGT Run BLAST on NCBI protein sequence of TCONS_00066529-protein >TCONS_00066529-protein ID=TCONS_00066529-protein|Name=TCONS_00066529-protein|organism=Clytia hemisphaerica|type=polypeptide|length=190bp
QVDDTSENNNTVDSSDGLFNDAITNYLNALKVSERRAESVLQESKEIVSF
VENSNRKTSTEELLKRKLQEELYIENEDLISLRNTVLKDLEKEEEEENHV
AVKQEKNDDTVTTATSEEETIDEIKTLEEQTEKELNELTEKQNEEAESKR
KVTEKLRKESIVNDLLNEEKRRKHQSLIEIFRTKQEEEQQ Run BLAST on NCBI transcript from alignment at scaffold_456:826124..831827+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066529 ID=TCONS_00066529|Name=TCONS_00066529|organism=Clytia hemisphaerica|type=transcript|length=5704bp|location=Sequence derived from alignment at scaffold_456:826124..831827+ (Clytia hemisphaerica)
CAGGTCGATGATACATCTGAGAACAACAACACTGTCGATAGTAGCGATGG
ACTTTTCAATGATGCGATCACAAATTATTTGAACGCTTTGAAAGTAAGCG
AACGACGTGCCGAGAGTGTTTTACAAGAGTCAAAAGAAAtcgtttctttt
gttgaaaattgtaAGCCATTCGTACTAGTTTTTGATTAATTGAAATATTG
ACATTCTCATCTCCTGATGCTGTTAAAATGCCTTCTGAGTAGAGTCTTTC
ACAAACAGTCAACTCTTTcttattcgaacctctattattatTTTACCCGC
TTTATTATTTTGTCCGCTCAGCTGGAAGGTCGTATAAACACTCTCCGtat
ttcgaatttttctcttattcgaATGAAATTTATTGgtctcttgaagatcg
aattagagagagtcaactgtatctTCAAATCTGCGCTATTCAGAGTCTTT
TGAGTCTACTAGATGTTCCTACTAATGTTTTAACTtctattattatatac
ctgtaggcaaaaacagccattgaataattcctaatataccatggctatta
taccacggtagaatttttggacctaccctggtgggctgtaggtcctataa
attaacctctgttcgttcgttcgtccgttcgtccgttcgtccgttcgtta
ctagcttttctcgggattggctcattaNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNaatgtgacggagcccgattttcga
aaaaaattcattttcggccgaaaatgccggaaatatgccggaaaaaccgg
ttttttggcattttctcgagatttcatcattagttttttctgattttttg
cacaaagatgcgtattagcaatgcctaaaacatggattagtccgattctt
gataaaaattctattccggctgaaaatgccggaaatatcccggaaatcgc
cgtttttgcagattttcattggactttttccttatatttcgttgtttttt
cacacaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtgccg
gaaaaaccggttttttggcattttctcgagatttcatcattagttttttc
tgattttttgcacaaagatgcgtattaacaatgtctaaaacatggccgag
ttcgatttttgagaaaaattctattctggctgaaaatgccggaaatcgcc
gtctttgcagattttcattatatgttttccttgtatttctatgttcttca
cacaaaaacattattgataacaagttcaccatcaagcatgattcaattgt
caataaaactgatttttgcgaccagaactttctattaatttttccctaca
acccttccctgtcccccatcaacaatcaatgatgaatttattgcgttatg
cattttcgctaaacgatatattttctgactgatttttttctcctcgcatt
gctatctaactttcatcatcaggtaggtccattcagcatctagcttgttt
tttcaaattttgctttcaaagtttgattttttttgtcgtttttgttgtta
tatcaaagaaattcattaaaataaatctattgcaATTTCATGAACAcatt
ttatgactcaaagtaatcaagaaaatcattaaaaaataaaaacattcgaa
cgttcgattatatgggagtgttttatgtGAAACGTTTAACAATTGACATT
TATTATATatctgtaggcaaaaacagccattgaataattcctgatatacc
atggctattataccacggtagaattttgttttcaaattttgagttttttg
ttgctttggttgttatcaaagaaattcattaaaataaatctattgtcaat
ttcataaacaaattttatgacttaaaGTAATTAAGGAAATcattaagaaa
gaaaaacattcgaacgttcgattatagGAGTGTTTTAAGTGAAACGTTTA
GCTATTGACATaattaatgttttatttttgcctctaggtatataataaaa
catatattcaataggttttcgttggttattggatttattaaccctcggtg
atgtatattcaactcggcttcgcctcgttgaatattacatcacctcgggt
tagtaaatctcaataaccaacttttacccattgaatatctgcttattatt
tGTCGAACTCCACATTAAGAATAATATTGTGCAATTTCACATACCGAATT
TAGGAAAGAAAGGTCATATATATTGATGAGAAAGGCTTTGTCAGTACGAT
TCAAGGTCTGCCTCAACCTTTTTAAACGtttcagaaaatgaagatgaaaa
atgaagaagaattgCTAGAAACTTCATCTTTCGTACAGGAGAGGTACCTT
AAAGTATCCTTCTTGGATTGGTGTTGTATAAAACTCTATTAATTGAACTA
TTGGTGACTTTTAAAGGTTTGCTTTTCACATCATCTTCTTGAGCTTCCCT
TTGTACATCTAGCGAACAGAAAGACATCAACAGAGGAATTGCTGAAGAGA
AAATTGCAAGAAGAATTATACatcgaaaatgaagatttaattTCATTACG
TAACACTGTAAGTCAATCATTGAAGAGGGTTGCGCCAATGAAATCTATAG
CCCAGTGTGGAAACGATGTAAAGTCCACGCCGAATTGTTATTTGTTTAAA
ATGAGGTCTACaacaaaaaaatccgaaattgCAGGGGGGCTGTAAGCCCT
CCAAACGGGTCCAGGGCTGAGAAGCCCCCCAAAATCACCATTTCCACGCT
GGTCTATAGCTTATTTTATTTATCCTGATAGAGATTTTATATCTATCTTA
TTAGTTGGCTAAAAATAGGCTAGAGTATGTATGACTCAAATGGTCAGAGt
gaaaaagaaatctttcttttgtcatggagacattcgagttatagaggttc
taCTGTAGTACCAAAGCGTAATGAACTAAATTTTTGGAAGGATGACTAAA
TTTCATGTCGATTCATCTCAAAGGAGGGTTACGCATAATACCGCGTCCTT
ACCTAGCATGATCAAACTTTCCACAGCTCCCGATGTCCAATTGTGGTTGG
AAATTTTTCCTTTAGAGCAGCCTGTATCATCTCTCAGTAGTTGATTGATG
CTTAGGTTTTGCAATGGCCACCACGTCATCTTTTTCTCAGTAGAAGGTTC
CAATTAAAGTTCTACATTTATTAGTATGGTCCGCCAAGATTCACTTGAGA
TTCTTTAGCATAGTTATAGttaatagcgagattatgtatctggaattctc
tacggctacggttagagtggcgagggaaatggcgagtaaggcaagtaatg
gcgggtgaaagcaagttcgatatttaacgtacggcattatgtcgactttg
cttgtacggtgttttggtgtttttcccgtacagagcaaagtagacaacga
catgtcacctttggtgacgacccgtatgggtagccccgcaaccgtagtcg
tagaatatctccgatacataatctctcTAATGCACTCTTATCAGACGTTA
TACTCTTCAATACGCTCATTtgtgaaagtcaccgtcaacaagaactTCTC
ATAAACGACACCCCTTTAAAATCGAATAAAAGAGAGCGCCAACTGTATTT
CTAAATGCATTTTTCTTTGCAGGTTTTGAAAGACTTGGAGAAAGAAGAGG
AAGAAGAGAACCACGTGGCTGTCAAACAGGAGAAGAATGATGATACCGTT
ACTACCGCTACAAGTGAGGAAGAAACTATTGATGAGATCAAAACATTGGA
AGAACAAACAGAAAAAGAACTGAACGAGTTGACggaaaaacaaaatgaag
aagCTGAATCTAAAaggttgattttctttttttctagtgAATGATTGAAT
GTACATTTGATAATAATATTTCTGTCAATTTAACTATTTGTCAATGCATC
AGGAAGCTAAGCAAACAACTTACGTTTATAGCTTAAACTTGACACTATAG
TATATATACACATTTGGTTGAGCATCCACCTTGCAGTCTAATGGTTATAA
GTACGACTGCCGCCAACATAGAGATTGGGTTGGTTgtattgggtaatctg
atctacaATCAACCTCTAAATATATTGATAACTATGGGTATTTTAAAGTC
GTTCAGAATTTAAATGGTCGGGCAAGAATTGCAATTTCAGTATGTCCTTT
TCATAGGCTTTGTGAAGGGGTTTAGTGGCTTCTCATCCTTATTCCCTCAT
ATTTGAACTTCTGGATCTCGAGATCCTTAGTTCCATAGTCCAATGTTAAA
TCTCAGAATTCAAAATCTACCTTCCAGAATTATATTGGAACTTTTtgcag
tttttaaaatttttcagggaatttcccttttttcaaatattatgactttc
aTTACTGTAGCAGTAGCAGAGCTAAAAAGTATGTGCGGAGCTCCACTTCG
AATTCGATTCCCAGGTCTAGCGCGAAGAGAAATTGGGATAGATGCTCTCA
CTTCCTGCTATGtagacagccaccagatgaagaATATTTTACAGCCTGAC
tttattttttcctctttcatCAACCTCGCAGGAAAGTCACAGAAAAGCTT
CGTAAAGAGTCTATCGTCAACGACCTTCTAAACGAAGAAAAAAGACGAAA
ACATCAAAGCTTGATCGAGATATTTCGCACGAAGCAGGAGGAAGAGCAAC
AGGT Coding sequence (CDS) from alignment at scaffold_456:826124..831827+ >TCONS_00066529 ID=TCONS_00066529|Name=TCONS_00066529|organism=Clytia hemisphaerica|type=CDS|length=2280bp|location=Sequence derived from alignment at scaffold_456:826124..831827+ (Clytia hemisphaerica)
CAGGTCGATGATACATCTGAGAACAACAACACTGTCGATAGTAGCGATGG
ACTTTTCAATGATGCGATCACAAATTATTTGAACGCTTTGAAAGTAAGCG
AACGACGTGCCGAGAGTGTTTTACAAGAGTCAAAAGAAAtcgtttctttt
gttgaaaattCGAACAGAAAGACATCAACAGAGGAATTGCTGAAGAGAAA
ATTGCAAGAAGAATTATACatcgaaaatgaagatttaattTCATTACGTA
ACACTGTTTTGAAAGACTTGGAGAAAGAAGAGGAAGAAGAGAACCACGTG
GCTGTCAAACAGGAGAAGAATGATGATACCGTTACTACCGCTACAAGTGA
GGAAGAAACTATTGATGAGATCAAAACATTGGAAGAACAAACAGAAAAAG
AACTGAACGAGTTGACggaaaaacaaaatgaagaagCTGAATCTAAAagG
AAAGTCACAGAAAAGCTTCGTAAAGAGTCTATCGTCAACGACCTTCTAAA
CGAAGAAAAAAGACGAAAACATCAAAGCTTGATCGAGATATTTCGCACGA
AGCAGGAGGAAGAGCAACAGCAGGTCGATGATACATCTGAGAACAACAAC
ACTGTCGATAGTAGCGATGGACTTTTCAATGATGCGATCACAAATTATTT
GAACGCTTTGAAAGTAAGCGAACGACGTGCCGAGAGTGTTTTACAAGAGT
CAAAAGAAAtcgtttcttttgttgaaaattCGAACAGAAAGACATCAACA
GAGGAATTGCTGAAGAGAAAATTGCAAGAAGAATTATACatcgaaaatga
agatttaattTCATTACGTAACACTGTTTTGAAAGACTTGGAGAAAGAAG
AGGAAGAAGAGAACCACGTGGCTGTCAAACAGGAGAAGAATGATGATACC
GTTACTACCGCTACAAGTGAGGAAGAAACTATTGATGAGATCAAAACATT
GGAAGAACAAACAGAAAAAGAACTGAACGAGTTGACggaaaaacaaaatg
aagaagCTGAATCTAAAagGAAAGTCACAGAAAAGCTTCGTAAAGAGTCT
ATCGTCAACGACCTTCTAAACGAAGAAAAAAGACGAAAACATCAAAGCTT
GATCGAGATATTTCGCACGAAGCAGGAGGAAGAGCAACAGCAGGTCGATG
ATACATCTGAGAACAACAACACTGTCGATAGTAGCGATGGACTTTTCAAT
GATGCGATCACAAATTATTTGAACGCTTTGAAAGTAAGCGAACGACGTGC
CGAGAGTGTTTTACAAGAGTCAAAAGAAAtcgtttcttttgttgaaaatt
CGAACAGAAAGACATCAACAGAGGAATTGCTGAAGAGAAAATTGCAAGAA
GAATTATACatcgaaaatgaagatttaattTCATTACGTAACACTGTTTT
GAAAGACTTGGAGAAAGAAGAGGAAGAAGAGAACCACGTGGCTGTCAAAC
AGGAGAAGAATGATGATACCGTTACTACCGCTACAAGTGAGGAAGAAACT
ATTGATGAGATCAAAACATTGGAAGAACAAACAGAAAAAGAACTGAACGA
GTTGACggaaaaacaaaatgaagaagCTGAATCTAAAagGAAAGTCACAG
AAAAGCTTCGTAAAGAGTCTATCGTCAACGACCTTCTAAACGAAGAAAAA
AGACGAAAACATCAAAGCTTGATCGAGATATTTCGCACGAAGCAGGAGGA
AGAGCAACAGCAGGTCGATGATACATCTGAGAACAACAACACTGTCGATA
GTAGCGATGGACTTTTCAATGATGCGATCACAAATTATTTGAACGCTTTG
AAAGTAAGCGAACGACGTGCCGAGAGTGTTTTACAAGAGTCAAAAGAAAt
cgtttcttttgttgaaaattCGAACAGAAAGACATCAACAGAGGAATTGC
TGAAGAGAAAATTGCAAGAAGAATTATACatcgaaaatgaagatttaatt
TCATTACGTAACACTGTTTTGAAAGACTTGGAGAAAGAAGAGGAAGAAGA
GAACCACGTGGCTGTCAAACAGGAGAAGAATGATGATACCGTTACTACCG
CTACAAGTGAGGAAGAAACTATTGATGAGATCAAAACATTGGAAGAACAA
ACAGAAAAAGAACTGAACGAGTTGACggaaaaacaaaatgaagaagCTGA
ATCTAAAagGAAAGTCACAGAAAAGCTTCGTAAAGAGTCTATCGTCAACG
ACCTTCTAAACGAAGAAAAAAGACGAAAACATCAAAGCTTGATCGAGATA
TTTCGCACGAAGCAGGAGGAAGAGCAACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066529-exon-scaffold_456-1491911889:826124..826283 | TCONS_00066529-exon-scaffold_456-1491911889:826124..826283 | Clytia hemisphaerica | exon |
| TCONS_00066529-exon-scaffold_456-1510915933:826124..826283 | TCONS_00066529-exon-scaffold_456-1510915933:826124..826283 | Clytia hemisphaerica | exon |
| TCONS_00066529-exon-scaffold_456-1575043694:826124..826283 | TCONS_00066529-exon-scaffold_456-1575043694:826124..826283 | Clytia hemisphaerica | exon |
| TCONS_00066529-exon-scaffold_456-1491911889:829636..829730 | TCONS_00066529-exon-scaffold_456-1491911889:829636..829730 | Clytia hemisphaerica | exon |
| TCONS_00066529-exon-scaffold_456-1510915933:829636..829730 | TCONS_00066529-exon-scaffold_456-1510915933:829636..829730 | Clytia hemisphaerica | exon |
| TCONS_00066529-exon-scaffold_456-1575043694:829636..829730 | TCONS_00066529-exon-scaffold_456-1575043694:829636..829730 | Clytia hemisphaerica | exon |
| TCONS_00066529-exon-scaffold_456-1491911889:830796..830989 | TCONS_00066529-exon-scaffold_456-1491911889:830796..830989 | Clytia hemisphaerica | exon |
| TCONS_00066529-exon-scaffold_456-1510915933:830796..830989 | TCONS_00066529-exon-scaffold_456-1510915933:830796..830989 | Clytia hemisphaerica | exon |
| TCONS_00066529-exon-scaffold_456-1575043694:830796..830989 | TCONS_00066529-exon-scaffold_456-1575043694:830796..830989 | Clytia hemisphaerica | exon |
| TCONS_00066529-exon-scaffold_456-1491911889:831705..831827 | TCONS_00066529-exon-scaffold_456-1491911889:831705..831827 | Clytia hemisphaerica | exon |
| TCONS_00066529-exon-scaffold_456-1510915933:831705..831827 | TCONS_00066529-exon-scaffold_456-1510915933:831705..831827 | Clytia hemisphaerica | exon |
| TCONS_00066529-exon-scaffold_456-1575043694:831705..831827 | TCONS_00066529-exon-scaffold_456-1575043694:831705..831827 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_456 | supercontig | scaffold_456:826124..831827 + |
Blast
The following BLAST results are available for this feature:
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