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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066533 ID=TCONS_00066533|Name=TCONS_00066533|organism=Clytia hemisphaerica|type=transcript|length=3407bpRun BLAST on NCBI protein sequence of TCONS_00066533-protein >TCONS_00066533-protein ID=TCONS_00066533-protein|Name=TCONS_00066533-protein|organism=Clytia hemisphaerica|type=polypeptide|length=763bp MRKSLFLYWNIFLVLCFVLQIHCKQTYSLIGNKGSNEGILVVEENGSLKFRun BLAST on NCBI transcript from alignment at scaffold_456:1226..120667- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00066533 ID=TCONS_00066533|Name=TCONS_00066533|organism=Clytia hemisphaerica|type=transcript|length=119442bp|location=Sequence derived from alignment at scaffold_456:1226..120667- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_456:1226..120667- >TCONS_00066533 ID=TCONS_00066533|Name=TCONS_00066533|organism=Clytia hemisphaerica|type=CDS|length=29796bp|location=Sequence derived from alignment at scaffold_456:1226..120667- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00066533 vs. Swiss-Prot (Human)
Match: LOXL2 (Lysyl oxidase homolog 2 OS=Homo sapiens GN=LOXL2 PE=1 SV=1) HSP 1 Score: 353.599 bits (906), Expect = 6.294e-106 Identity = 233/687 (33.92%), Postives = 346/687 (50.36%), Query Frame = 1
Query: 601 NEGILVVEENGSLKFTCSNYWGAQNSKVLCRELGYRKHLATNSKRASSIRTLRGHQKTFYPFDVTCESNEKTLTECHR--------KYVKNVNIERHCGANSYVYIQCDSQIE---ERDNRTLEDPFNVRLINKNVVQGPVXXXXXXXXXXXXDGEGRL-ASVCIDDWSDASSLVACKNTGFSKVKKFTSSVYNDIDSN-EMAFLRFR--CHGNESILEQCKHETTEFCTNNEIVFLECGTEDENAVITELNGEI--------------------RVRGGAYPSVGRVEVFDGQQWGTICDDQWDLFDANVVCQQLGFGSAIEATHWADNGEGLGNILLTNVACNGTEKHLKDCIHSMDTSPCTHREDAGVRCRRPFVNHKMRIKLVGGKKPTEGRIEFLDSKNE---WSGICGIGFGRSEGEVVCRQLGLDFVKWAGRSYKY---GLNYRKR-MFDVRCKGSESELXX----XXXXXXXXXXXXXMASVICTQYAPDLVMDIRLFKQSIKVDTHPLHHLRCSFEERCLSPEVDNIWGRSGFHNRHLLKFTSRFLNKGAVTFRPHIDKSSWQWHQCHEHYHSMETFAIYDLIDNNGYRIAHGQKASFCLEDSDCEPGYKKNFNCTDKGDQGITVNCADNYSNRIDCQWIDVTNVPFGNYSLRVDANPLRNVTESDWLNNRAVCEIGY 2523
+EG + V +G C + + + V+CRELGY +K ++ + + + ++ C NE TL C K+ ++V + C + D+ + E N +ED +++ + PV GY+ + EG+ +C W+ +S V C GF + + + VY S + + F C G E+ + CK + V E G AV++ + G++ R+RGGAY GRVEV +WGT+CDD+WDL A+VVC++LGFGSA EA + G+G+G I L + C G EK + DC + ++ C H EDAGVRC P + + +++L GG+ P EGR+E L +N W +CG +G E VVCRQLGL F A + Y +N K M V+C G+E L+ + A V C++ APDLV++ + +Q+ ++ P+ L+C+ EE CLS +G+ R LL+F+S+ N G FRP + +W WH CH HYHSME F YDL++ NG ++A G KASFCLED++CE +KN+ C + GDQGIT+ C D Y + IDCQW+D+T+VP G+Y +V NP V ESD+ NN C Y
Sbjct: 68 SEGRVEVYYDGQWGTVCDDDFSIHAAHVVCRELGY-----VEAKSWTASSSYGKGEGPIWLDNLHCTGNEATLAACTSNGWGVTDCKHTEDVGVV--CSDKRIPGFKFDNSLINQIENLNIQVEDIRIRAILSTYRKRTPVMEGYVEVK------EGKTWKQICDKHWTAKNSRVVCGMFGFPGERTYNTKVYKMFASRRKQRYWPFSMDCTGTEAHISSCKLGPQVSLDPMKNVTCENGLP---AVVSCVPGQVFSPDGPSRFRKAYKPEQPLVRLRGGAYIGEGRVEVLKNGEWGTVCDDKWDLVSASVVCRELGFGSAKEAVTGSRLGQGIGPIHLNEIQCTGNEKSIIDCKFNAESQGCNHEEDAGVRCNTPAMGLQKKLRLNGGRNPYEGRVEVLVERNGSLVWGMVCGQNWGIVEAMVVCRQLGLGFASNAFQETWYWHGDVNSNKVVMSGVKCSGTELSLAHCRHDGEDVACPQGGVQYGAGVACSETAPDLVLNAEMVQQTTYLEDRPMFMLQCAMEENCLSASAAQTDPTTGY--RRLLRFSSQIHNNGQSDFRPKNGRHAWIWHDCHRHYHSMEVFTHYDLLNLNGTKVAEGHKASFCLEDTECEGDIQKNYECANFGDQGITMGCWDMYRHDIDCQWVDITDVPPGDYLFQVVINPNFEVAESDYSNNIMKCRSRY 736 The following BLAST results are available for this feature:
BLAST of TCONS_00066533 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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