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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066534 ID=TCONS_00066534|Name=TCONS_00066534|organism=Clytia hemisphaerica|type=transcript|length=2755bpRun BLAST on NCBI transcript from alignment at scaffold_456:1226..124657- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00066534 ID=TCONS_00066534|Name=TCONS_00066534|organism=Clytia hemisphaerica|type=transcript|length=123432bp|location=Sequence derived from alignment at scaffold_456:1226..124657- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00066534 vs. Swiss-Prot (Human)
Match: LOXL2 (Lysyl oxidase homolog 2 OS=Homo sapiens GN=LOXL2 PE=1 SV=1) HSP 1 Score: 346.28 bits (887), Expect = 6.907e-105 Identity = 200/525 (38.10%), Postives = 283/525 (53.90%), Query Frame = 3
Query: 399 VCIDDWSDASSLVACKNTGFSKVKKFTSSVYNDIDSN-EMAFLRFR--CHGNESILEQCKHETTEFCTNNEIVFLECGTEDENAVITELNGEI--------------------RVRGGAYPSVGRVEVFDGQQWGTICDDQWDLFDANVVCQQLGFGSAIEATHWADNGEGLGNILLTNVACNGTEKHLKDCIHSMDTSPCTHREDAGVRCRRPFVNHKMRIKLVGGKKPTEGRIEFLDSKNE---WSGICGIGFGRSEGEVVCRQLGLDFVKWAGRSYKY---GLNYRKR-MFDVRCKGSESELXX----XXXXXXXXXXXXXMASVICTQYAPDLVMDIRLFKQSIKVDTHPLHHLRCSFEERCLSPEVDNIWGRSGFHNRHLLKFTSRFLNKGAVTFRPHIDKSSWQWHQCHEHYHSMETFAIYDLIDNNGYRIAHGQKASFCLEDSDCEPGYKKNFNCTDKGDQGITVNCADNYSNRIDCQWIDVTNVPFGNYSLRVDANPLRNVTESDWLNNRAVCEIGY 1871
+C W+ +S V C GF + + + VY S + + F C G E+ + CK + V E G AV++ + G++ R+RGGAY GRVEV +WGT+CDD+WDL A+VVC++LGFGSA EA + G+G+G I L + C G EK + DC + ++ C H EDAGVRC P + + +++L GG+ P EGR+E L +N W +CG +G E VVCRQLGL F A + Y +N K M V+C G+E L+ + A V C++ APDLV++ + +Q+ ++ P+ L+C+ EE CLS +G+ R LL+F+S+ N G FRP + +W WH CH HYHSME F YDL++ NG ++A G KASFCLED++CE +KN+ C + GDQGIT+ C D Y + IDCQW+D+T+VP G+Y +V NP V ESD+ NN C Y
Sbjct: 217 ICDKHWTAKNSRVVCGMFGFPGERTYNTKVYKMFASRRKQRYWPFSMDCTGTEAHISSCKLGPQVSLDPMKNVTCENGLP---AVVSCVPGQVFSPDGPSRFRKAYKPEQPLVRLRGGAYIGEGRVEVLKNGEWGTVCDDKWDLVSASVVCRELGFGSAKEAVTGSRLGQGIGPIHLNEIQCTGNEKSIIDCKFNAESQGCNHEEDAGVRCNTPAMGLQKKLRLNGGRNPYEGRVEVLVERNGSLVWGMVCGQNWGIVEAMVVCRQLGLGFASNAFQETWYWHGDVNSNKVVMSGVKCSGTELSLAHCRHDGEDVACPQGGVQYGAGVACSETAPDLVLNAEMVQQTTYLEDRPMFMLQCAMEENCLSASAAQTDPTTGY--RRLLRFSSQIHNNGQSDFRPKNGRHAWIWHDCHRHYHSMEVFTHYDLLNLNGTKVAEGHKASFCLEDTECEGDIQKNYECANFGDQGITMGCWDMYRHDIDCQWVDITDVPPGDYLFQVVINPNFEVAESDYSNNIMKCRSRY 736 HSP 2 Score: 87.4261 bits (215), Expect = 1.636e-17 Identity = 65/231 (28.14%), Postives = 100/231 (43.29%), Query Frame = 3
Query: 384 GRLASVCIDDWSDASSLVACKNTGFSKVKKFTSSVYNDIDSNEMAFLRFRCHGNESILEQCK-HETTEFCTNNEIVFLECGTEDENAVITELNGEIRVRGGAYPSVGRVEVFDGQQ----WGTICDDQWDLFDANVVCQQLGFGSAIEATH--WADNGEGLGN-ILLTNVACNGTEKHLKDCIHSMDTSPCTH---REDAGVRCRRPFVNHKMRIKLVGGKKPTEGRIEFL 1043
G +VC D W S+ V C+ GF K+ + + +C GNE + CK + ++ C + E + C N L ++R+ GG P GRVEV + WG +C W + +A VVC+QLG G A A W +G+ N ++++ V C+GTE L C H + C + AGV C + + ++V E R F+
Sbjct: 345 GEWGTVCDDKWDLVSASVVCRELGFGSAKEAVTGSRLGQGIGPIHLNEIQCTGNEKSIIDCKFNAESQGCNHEEDAGVRC-----NTPAMGLQKKLRLNGGRNPYEGRVEVLVERNGSLVWGMVCGQNWGIVEAMVVCRQLGLGFASNAFQETWYWHGDVNSNKVVMSGVKCSGTELSLAHCRHDGEDVACPQGGVQYGAGVACSETAPDLVLNAEMVQQTTYLEDRPMFM 570 HSP 3 Score: 82.8037 bits (203), Expect = 4.735e-16 Identity = 81/329 (24.62%), Postives = 134/329 (40.73%), Query Frame = 3
Query: 381 EGRLASVCIDDWSDASSLVACKNTGFSKVKKFTSSVYNDIDSNEMAFLRFRCHGNESILEQCKHET--TEFCTNNEIVFLEC------GTEDENAVITELNG------EIRVRG------GAYPSV-GRVEVFDGQQWGTICDDQWDLFDANVVCQQLGFGSAIEATHWADNGEGLGN-----ILLTNVACNGTEKHLKDC-------IHSMDTSPCTHREDAGVRC--------------RRPFVNHKMRIKLVGGKKPTEGRIEFLDSKNEWSGICGIGFGRSEGEVVCRQLGLDFVKWAGRSYKYGLNYRK-RMFDVRCKGSESEL 1223
+G+ +VC DD+S ++ V C+ G+ + K +T+S + C GNE+ L C C + E V + C G + +N++I ++ +IR+R P + G VEV +G+ W ICD W ++ VVC GF E T+ + + ++ C GTE H+ C + M C + A V C R+ + + ++L GG EGR+E L + EW +C + VVCR+LG K A + G + +++C G+E +
Sbjct: 77 DGQWGTVCDDDFSIHAAHVVCRELGYVEAKSWTASSSYGKGEGPIWLDNLHCTGNEATLAACTSNGWGVTDCKHTEDVGVVCSDKRIPGFKFDNSLINQIENLNIQVEDIRIRAILSTYRKRTPVMEGYVEVKEGKTWKQICDKHWTAKNSRVVCGMFGFPG--ERTYNTKVYKMFASRRKQRYWPFSMDCTGTEAHISSCKLGPQVSLDPMKNVTCENGLPAVVSCVPGQVFSPDGPSRFRKAYKPEQPLVRLRGGAYIGEGRVEVLKN-GEWGTVCDDKWDLVSASVVCRELGFGSAKEAVTGSRLGQGIGPIHLNEIQCTGNEKSI 402 The following BLAST results are available for this feature:
BLAST of TCONS_00066534 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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