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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066545 ID=TCONS_00066545|Name=TCONS_00066545|organism=Clytia hemisphaerica|type=transcript|length=7159bpRun BLAST on NCBI protein sequence of TCONS_00066545-protein >TCONS_00066545-protein ID=TCONS_00066545-protein|Name=TCONS_00066545-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1989bp MPWYFPWSESIKKRACRYLLQHYLGDFLKEKLDLDQLSVDLYNGKGTIKERun BLAST on NCBI transcript from alignment at scaffold_456:201131..275803- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00066545 ID=TCONS_00066545|Name=TCONS_00066545|organism=Clytia hemisphaerica|type=transcript|length=74673bp|location=Sequence derived from alignment at scaffold_456:201131..275803- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_456:201131..275803- >TCONS_00066545 ID=TCONS_00066545|Name=TCONS_00066545|organism=Clytia hemisphaerica|type=CDS|length=202980bp|location=Sequence derived from alignment at scaffold_456:201131..275803- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00066545 vs. Swiss-Prot (Human)
Match: ATG2B (Autophagy-related protein 2 homolog B OS=Homo sapiens GN=ATG2B PE=1 SV=5) HSP 1 Score: 763.837 bits (1971), Expect = 0.000e+0 Identity = 576/1871 (30.79%), Postives = 923/1871 (49.33%), Query Frame = 3
Query: 96 MPWYFPWSESIKKRACRYLLQHYLGDFLKEKLDLDQLSVDLYNGKGTIKEVPLDVWALNEMLSNSGVPIELVDGFIESISVLVPWKALLNDSCEIEIHGLQLTFAGRQK-SEGSLVESIHSWSSMSMTTSIQMAQECLKQDPTLADPQ-ESGQSFEGLEAFAQTIESVLARVRLSFVNTKIRLEHLPFAAKSGVGIDLTIDRIDYWDLSHEEIGRDNTPQHSVYEPVAVAIKNFQIIGANLFIDEFPKQNRTRLRSMYSDEDEDLSGSPLSPLKEDYTRYXXXXXXXXRSHQDEDIPPNLLPK--VKFLSSCGKQNIKLKLKQNDAIPGHKIDLEYSIAALNMFLTPREFHLLNDVVXXXXXXXXXXXXXXXXXRDNNIYYXXXXXXXXXXXXXXXXXXXRPKMREMRTEDFTKVEESLQQQFTSVDSHDWK-SAINSLNSTEGTSMNRASSEEEFFSMTDY-------PLPQLGQPTLLN-----TVKQCNLTGSEDISTGRFSPTSPRXXXXXXXXXXXXXXXXXXXXXXEKASTIFRGSTSGSPGQRTQHGFVSSPXXXXXXNLGLAGVGKLDDTGESTRVRMRASNIIIIVLHRDPLEGVDSVDC--SLEEISANFFNHVSQYSIQSLFGINADDVKDNLLSICTYDHLRILSSALNIEAEFNSNSQS----IDLILGKLSIDENLFEDNGYRRKPYSQTQVVSFDQQDVSPLYPGSFGASLSPCVKLKISKTA-RSATGVHSRGSMAP-KSQITVELGTIILDVDLTLMDRIAALLSQEPLYKTISPAHPHYSDMYNSLATGKSANHETAYRQAMYD---SPMNSDYKTDLVCKCAKSQIFLRIPVPDLRSSSNLEKKPWWRRQVHKESLLIDLHGFELKTILASSNHPTSSSYDLGFREAKGTFIT----PTNKYHVFDIGPTTEEGESGSMGVDMPRILINLTPPSSRSVFE--------TSEG--LSKDDSSPDSIEDQYPWMKSEPSPFSTQPNMYNENEEMVTPGSVNEMNAFQEFVSSNTSMAVNCYFPSMRMNLHTNEVFELFYNRIFGDLVMFEPTAPAPVELPSKMNNPYESVHINLASHIGQLDSGMANLNAGDKFFMCRSAVRGDTYDSHSTGDDNSL--FSGDFYNDAYTRQHQ--------QTNFSFSLHIDDGKIALFPPLNPATETENKEDTLHEDSDESLLGHVVISAKEAHLFVASGFKGKTNLDFIELYTNTIDFYHNSILNESI--DFMLMQDALCIDYLEQTIYPSMP-SIQKKCRASCRPEGTAMLSLAMKCVS-HPESKRKENTVSVAIRGGTLKHRVLPSGHSWLTQIMDFMDIKDFAITGYTFPSVVTTLHMHLWGCAIDYRPLHIPIHSLLTMESFSLSSNIIPGSSTSILRFIFEDSALHLCDRSLNDMCDFD-EFVSVLDMGIFELSL---KFNSDKGKKQPVFEMTMSNNLLNIRTCADSCVALMKLVQYFASDGDLQTGIAAEIERD-FNESLELASQELSQPAPSQLPTTSEVVEGERENDSIDIHSLMIDAMNDTDEMVDDRFQGT---------VIDEH-------------IDEETGDESDTSA----------------------DEFCLLDDAQAEVQD-EFEPVLRQISDIRINLIENFIPIPQGKHDQLLSPDGYPCATHRYTIKEMSLMWQMYGGSDFTLPKXXXXXXXXXXXXXXQYNNPMSKGKSDKANRANRVAGGPNRDLETLMELQMNKIRFQHEVFPE---------TAKQIYRDVLLVYDLELRDRLTSSMINKFLYRFSSENMPKQSSANMISIRLLVTKPEDSARSEEAALRISLQPLRFNVDQDSLFFLREFFTKVGG 5363
MPW P+SESIKKRACRYLLQ YLG FL+EKL L+QLS+DLY G G++ +VPLD W LNE+L ++ P+E+ +GFI+SIS+ VPW +LL D+C +E+ GL++ F R + + GS E ++ WSS MT+S+Q+A+ECL Q L D Q E Q FEGLE FA+TIE+VL RV+++F++T +R+EH+P +K+G +++ I+R Y D + +E N V++P A A K Q+ G +LF DEF ++ + + + SP K Y + P + P V+ G+ + L LKQN+ +PG K+D++ I ++++ L+PR+ HLL D++ +++ +S + N R M+ ED +++ L + + DS S+ S TE + EE FFSM D LP LG P ++ T N +S PT + + ST +P Q+T S P+ + +D++ R+ I VLH DPL ++ L ++ FF + + + + C++DHLR + + + + E S S D+ +G++ E LF + + P+ T++++F ++ + G+ C++L + R G +R S P K+++ ++L + ++D++++DR+ +LL + L T+ H YN K + A+ + D SP N + + +R P+PDLRS + E+ PW+++ + KE L + E KT + P +L FRE G+F P+ K+ F + + + S D PRI++ + PP+ S+ E ++G +++ S++D + PSPFS++ M+ ENE+MV PG EM FQ+ SN+ + P++ + L +E YNRIF DL+++EPTAP+PVE +E++ + + S + N D F +SAV YD S ++ +L FS N R+ + Q+ S L+I+ G IA+F T+ K+D + D E+ G + LF + ++G + +I L++++ YH I+N I + + +LE TIY S + K + MLS+A+K +S ES KE ++V ++G TL+HR+LPSG SW QI+ F++I D + GY P+ TT H+HLW CA+DYRPL++PI SLLT+E+FS+SS++ S+S LR I +++ALHL D+ + ++V V+DMG+ EL++ K +SD + +P FE+ S+++++IRTC+DSC ALM L+QY AS GDLQT A+++ F ++ S S LP E D + LM DAM + D QGT V+DE +E+G+ S S D+FC+L +A +Q+ E EPV++ + D I + +N+ +P K D +P +P RY +KE+SL+W +YGG DF + P+ + + + P G+ N V GG R+ + LME+Q++K++FQHEV+P + + R V +V DLE+RDRL +S +NKFLY + S+ MP+++ +NM++++ L PE +E LR+SL PLR N+DQD+LFFL++FFT +
Sbjct: 1 MPW--PFSESIKKRACRYLLQRYLGHFLQEKLSLEQLSLDLYQGTGSLAQVPLDKWCLNEILESADAPLEVTEGFIQSISLSVPWGSLLQDNCALEVRGLEMVFRPRPRPATGS--EPMY-WSSF-MTSSMQLAKECLSQK--LTDEQGEGSQPFEGLEKFAETIETVLRRVKVTFIDTVLRIEHVPENSKTGTALEIRIERTVYCDETADESSGIN-----VHQPTAFAHKLLQLSGVSLFWDEFSASAKSSPVCSTAPVETEPKLSPSWNPKIIYEPHPQLTRNL----------PEIAPSDPVQIGRLIGRLELSLTLKQNEVLPGAKLDVDGQIDSIHLLLSPRQVHLLLDMLAAIAGPENSSKIGLANKDRKN--------------------------RPMQQEDEYRIQMELNRYYLRKDSLSVGVSSEQSFYETETARTPSSREEEVFFSMADMDMSHSLSSLPPLGDPPNMDLELSLTSTYTNTPAGSPLSATVLQPTWGEFLDHHKEQPV-------------RGSTFPSNLVHPTPLQKT-----SLPSRSV----------SVDESRPELIFRLAVGTFSISVLHIDPLSPPETSQNLNPLTPMAVAFFTCIEKIDPARFSTEDFKSFRAVFAEACSHDHLRFIGTGIKVSYEQRQRSASRYFSTDMSIGQMEFLECLFPTDFHSVPPH-YTELLTFHSKEET-------GSHSPVCLQLHYKHSENRGPQGNQARLSSVPHKAELQIKLNPVCCELDISIVDRLNSLLQPQKL-ATVEMMASHMYTSYN-----KHISLHKAFTEVFLDDSHSPANCRISVQVATPALN--LSVRFPIPDLRS--DQERGPWFKKSLQKEILYLAFTDLEFKTEFIGGSTPEQIKLELTFRELIGSFQEEKGDPSIKF--FHVSSGVDGDTTSSDDFDWPRIVLKINPPAMHSILERIAAEEEEENDGHYQEEEEGGAHSLKDVCDLRRPAPSPFSSRRVMF-ENEQMVMPGDPVEMTEFQDKAISNSHYVLELTLPNIYVTLPNKSFYEKLYNRIFNDLLLWEPTAPSPVET-------FENISYGIGLSVA---SQLINTFNKDSFSAFKSAVH---YDEESGSEEETLQYFSTVDPNYRSRRKKKLDSQNKNSQSFLSVLLNINHGLIAVF--------TDVKQD--NGDLLENKHGEFWLEFNSGSLFCVTKYEGFDDKHYICLHSSSFSLYHKGIVNGVILPTETRLPSSTRPHWLEPTIYSSEEDGLSKTSSDGVGGDSLNMLSVAVKILSDKSESNTKEFLIAVGLKGATLQHRMLPSGLSWHEQILYFLNIADEPVLGYNPPTSFTTFHVHLWSCALDYRPLYLPIRSLLTVETFSVSSSVALDKSSSTLRIILDEAALHLSDKCNTVTINLSRDYVRVMDMGLLELTITAVKSDSDGEQTEPRFELHCSSDVVHIRTCSDSCAALMNLIQYIASYGDLQTPNKADMKPGAFQRRSKVDSSGRSSSRGPVLP----------EADQQMLRDLMSDAMEEIDMQ-----QGTSSVKPQANGVLDEKSQIQEPCCSDLFLFPDESGNVSQESGPTYASFSHHFISDAMTGVPTENDDFCILFAPKAAMQEKEEEPVIKIMVDDAIVIRDNYFSLPVNKTDTSKAPLHFPIPVIRYVVKEVSLVWHLYGGKDFGIVPPTSPAKSYISPHSSPSHTPTRHGR-------NTVCGGKGRNHDFLMEIQLSKVKFQHEVYPPCKPDCDSSLSEHPVSRQVFIVQDLEIRDRLATSQMNKFLYLYCSKEMPRKAHSNMLTVKALHVCPESGRSPQECCLRVSLMPLRLNIDQDALFFLKDFFTSLSA 1728 HSP 2 Score: 232.646 bits (592), Expect = 7.531e-61 Identity = 110/189 (58.20%), Postives = 141/189 (74.60%), Query Frame = 1
Query: 6037 ILGGVGPAYSLMQLFQGLKDLFWMPVLQYRQDGRIVRGIQKGAHSFSTSTAMAVLELSNKLVSTMQGLAELTFDMVSSGPSHVSSRQSTTQAAH-----PAELREGIANAYTVLTEGLSETASNLVRVATEEHEKKGMTGAVGGVLRQIPPTVVKPLILATEATSNVLGGAMNQLQPDKREEALQKWKQ 6588
ILGGVGP +SL+QL QGLKDL W+P+ QYR+DGRIVRG Q+GA SF TSTAMA LEL+N++V T+Q AE +DMVS G + +++ H P +LREG+A AY+V+ EG+++TA + A EHE +G+TGAVG VLRQIPP VVKPLI+ATEATSNVLGG NQ++PD R++ QKW+
Sbjct: 1887 ILGGVGPMHSLVQLVQGLKDLVWLPIEQYRKDGRIVRGFQRGAASFGTSTAMAALELTNRMVQTIQAAAETAYDMVSPGTLSIEPKKTKRFPHHRLAHQPVDLREGVAKAYSVVKEGITDTAQTIYETAAREHESRGVTGAVGEVLRQIPPAVVKPLIVATEATSNVLGGMRNQIRPDVRQDESQKWRH 2075 HSP 3 Score: 197.208 bits (500), Expect = 4.980e-50 Identity = 90/138 (65.22%), Postives = 112/138 (81.16%), Query Frame = 3
Query: 5616 STESLKSTEQPSLFIKSFLFSPEVPIRLDYHGKYVNIEKGTLAGLIMGLSQLNCSELKLKRLCSRSGLLGADKLVNFIINEWLNDIKQNQLQSILGGVGPAYSLMQLFQGLKDLFWMPVLQYRQDGRIVRGIQKGAHS 6029
S E +QP +F + F F+ EVPIRLDYHGK+V++++GTLAG+++GL+QLNCSELKLKRL R GLLG DKL ++ I EWLNDIK+NQL ILGGVGP +SL+QL QGLKDL W+P+ QYR+DGRIVRG Q+GA S
Sbjct: 1795 SAEEASFRDQP-VFFREFRFTSEVPIRLDYHGKHVSMDQGTLAGILIGLAQLNCSELKLKRLSYRHGLLGVDKLFSYAITEWLNDIKKNQLPGILGGVGPMHSLVQLVQGLKDLVWLPIEQYRKDGRIVRGFQRGAAS 1931 The following BLAST results are available for this feature:
BLAST of TCONS_00066545 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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