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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066548 ID=TCONS_00066548|Name=TCONS_00066548|organism=Clytia hemisphaerica|type=transcript|length=629bp
TATTGGGTAGATTATGTCAGCAATGCGATTAACACTCTCTCCAATGGCCG
AAACATTGTTTTTTACTCAAAACAGCAACTCCCTGTCATCACCAGCGAAG
ATTCTAGCTATAAAAAGTTAGTTTTCATGGCTGGTTTTGGGACAGGAAAA
ACGTTTTTGCTTCAAGAGAAAGCAATTCTCTTGAGTAAAGAAGACGAATA
TAAAGAACGCATATTATATGTGGTTTGTAACGGAAAAGGCTTATTATACC
ATGACAGGAAAGTGGAACTTCAAAAGTATGGAGTTACTGTCATCTCTGGT
GACGAAGCAAAGGAAAGCCTAAAGATGGCATGGTTGAGGAACCACTTCAA
AGCTATATTCTTTGACGAATGGAATGAAGATATACAAAACAAACTGAATG
TTGATTGGTTGAATGACTTCAAAGTTTGCTGGATCGCTCCCAATTCCGCG
TACCGGGCGAAAACGAAAGACCTCAATTTGATTAAGGGTCATTTCACGGA
GTTCAAAGTTGTTCAATTAACAACCAATTTGAGAAATACGAAAGAAATTG
TCAAAGCAACGAAAGAAATAGCTGAACGAGATCTCTACGAGTATGGTCAG
GGTGTTGCAGATACGCCGCCACACTTTCC Run BLAST on NCBI protein sequence of TCONS_00066548-protein >TCONS_00066548-protein ID=TCONS_00066548-protein|Name=TCONS_00066548-protein|organism=Clytia hemisphaerica|type=polypeptide|length=209bp
YWVDYVSNAINTLSNGRNIVFYSKQQLPVITSEDSSYKKLVFMAGFGTGK
TFLLQEKAILLSKEDEYKERILYVVCNGKGLLYHDRKVELQKYGVTVISG
DEAKESLKMAWLRNHFKAIFFDEWNEDIQNKLNVDWLNDFKVCWIAPNSA
YRAKTKDLNLIKGHFTEFKVVQLTTNLRNTKEIVKATKEIAERDLYEYGQ
GVADTPPHF Run BLAST on NCBI transcript from alignment at scaffold_456:223298..224346- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066548 ID=TCONS_00066548|Name=TCONS_00066548|organism=Clytia hemisphaerica|type=transcript|length=1049bp|location=Sequence derived from alignment at scaffold_456:223298..224346- (Clytia hemisphaerica)
TATTGGGTAGATTATGTCAGCAATGCGATTAACACTCTCTCCAATGGCCG
AAACATTGTTTTTTACTCAAAACAGCAACTCCCTGTCATCACCAGCGAAG
ATTCTAGCTATAAAAAGTTAGTTTTCATGGCTGGTTTTGGGACAGGAAAA
ACGTTTTTGCTTCAAGAGAAAGCAATTCTCTTGAGTAAAGAAGACGAATA
TAAAGAACGCATATTATATGTGGTTTGTAACGGAAAAGGCTTATTATACC
ATGACAGGAAAGTGGAACTTCAAAAGTATGGAGTTACTGTCATCTCTGGT
GACGAAGCAAAGGTAAGTGTGGCCACATTCGACTTCATGATATGCACCAC
TGCAATGATTTCACGAAATCATGCAACTTTTCTGTTTTTGTTCCACCCAA
TAGGTCACTTTTTCTAGTGTTTAAGTGACGTATTGGATGGAAAATTTTAA
AATTTCCCAGAAGACTCTCCAGTGGTGCATATCATGAATAAGTAACCATG
CCGTGGTTTGCGTGTTGGGGTTTGTGGACTTTTTGGGTGCTTCGTTGAGG
TATGGACCCTACCTAGGATTTAAAGACGATTTTTCGGATTGTGGCCCTGA
AAGTGATTTATTTCAATTGTAAGTTCGATTTTATTTACCAATTACATTTC
AATGCAGCAGTAACACCTTCGTGCTTGAAAGTTAAATTGTAACTGAATGA
AAGATATGAACAACCTTTTACTTGTTTTACAGGAAAGCCTAAAGATGGCA
TGGTTGAGGAACCACTTCAAAGCTATATTCTTTGACGAATGGAATGAAGA
TATACAAAACAAACTGAATGTTGATTGGTTGAATGACTTCAAAGTTTGCT
GGATCGCTCCCAATTCCGCGTACCGGGCGAAAACGAAAGACCTCAATTTG
ATTAAGGGTCATTTCACGGAGTTCAAAGTTGTTCAATTAACAACCAATTT
GAGAAATACGAAAGAAATTGTCAAAGCAACGAAAGAAATAGCTGAACGAG
ATCTCTACGAGTATGGTCAGGGTGTTGCAGATACGCCGCCACACTTTCC Coding sequence (CDS) from alignment at scaffold_456:223298..224346- >TCONS_00066548 ID=TCONS_00066548|Name=TCONS_00066548|organism=Clytia hemisphaerica|type=CDS|length=1254bp|location=Sequence derived from alignment at scaffold_456:223298..224346- (Clytia hemisphaerica)
GAAAGCCTAAAGATGGCATGGTTGAGGAACCACTTCAAAGCTATATTCTT
TGACGAATGGAATGAAGATATACAAAACAAACTGAATGTTGATTGGTTGA
ATGACTTCAAAGTTTGCTGGATCGCTCCCAATTCCGCGTACCGGGCGAAA
ACGAAAGACCTCAATTTGATTAAGGGTCATTTCACGGAGTTCAAAGTTGT
TCAATTAACAACCAATTTGAGAAATACGAAAGAAATTGTCAAAGCAACGA
AAGAAATAGCTGAACGAGATCTCTACGAGTATGGTCAGGGTGTTGCAGAT
ACGCCGCCACACTTTTATTGGGTAGATTATGTCAGCAATGCGATTAACAC
TCTCTCCAATGGCCGAAACATTGTTTTTTACTCAAAACAGCAACTCCCTG
TCATCACCAGCGAAGATTCTAGCTATAAAAAGTTAGTTTTCATGGCTGGT
TTTGGGACAGGAAAAACGTTTTTGCTTCAAGAGAAAGCAATTCTCTTGAG
TAAAGAAGACGAATATAAAGAACGCATATTATATGTGGTTTGTAACGGAA
AAGGCTTATTATACCATGACAGGAAAGTGGAACTTCAAAAGTATGGAGTT
ACTGTCATCTCTGGTGACGAAGCAAAGGAAAGCCTAAAGATGGCATGGTT
GAGGAACCACTTCAAAGCTATATTCTTTGACGAATGGAATGAAGATATAC
AAAACAAACTGAATGTTGATTGGTTGAATGACTTCAAAGTTTGCTGGATC
GCTCCCAATTCCGCGTACCGGGCGAAAACGAAAGACCTCAATTTGATTAA
GGGTCATTTCACGGAGTTCAAAGTTGTTCAATTAACAACCAATTTGAGAA
ATACGAAAGAAATTGTCAAAGCAACGAAAGAAATAGCTGAACGAGATCTC
TACGAGTATGGTCAGGGTGTTGCAGATACGCCGCCACACTTTTATTGGGT
AGATTATGTCAGCAATGCGATTAACACTCTCTCCAATGGCCGAAACATTG
TTTTTTACTCAAAACAGCAACTCCCTGTCATCACCAGCGAAGATTCTAGC
TATAAAAAGTTAGTTTTCATGGCTGGTTTTGGGACAGGAAAAACGTTTTT
GCTTCAAGAGAAAGCAATTCTCTTGAGTAAAGAAGACGAATATAAAGAAC
GCATATTATATGTGGTTTGTAACGGAAAAGGCTTATTATACCATGACAGG
AAAGTGGAACTTCAAAAGTATGGAGTTACTGTCATCTCTGGTGACGAAGC
AAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066548-exon-scaffold_456-1575043694:224035..224346 | TCONS_00066548-exon-scaffold_456-1575043694:224035..224346 | Clytia hemisphaerica | exon |
| TCONS_00066548-exon-scaffold_456-1575043694:223298..223614 | TCONS_00066548-exon-scaffold_456-1575043694:223298..223614 | Clytia hemisphaerica | exon |
| TCONS_00066548-exon-scaffold_456-1510915933:224035..224346 | TCONS_00066548-exon-scaffold_456-1510915933:224035..224346 | Clytia hemisphaerica | exon |
| TCONS_00066548-exon-scaffold_456-1510915933:223298..223614 | TCONS_00066548-exon-scaffold_456-1510915933:223298..223614 | Clytia hemisphaerica | exon |
| TCONS_00066548-exon-scaffold_456-1491911889:224035..224346 | TCONS_00066548-exon-scaffold_456-1491911889:224035..224346 | Clytia hemisphaerica | exon |
| TCONS_00066548-exon-scaffold_456-1491911889:223298..223614 | TCONS_00066548-exon-scaffold_456-1491911889:223298..223614 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_456 | supercontig | scaffold_456:223298..224346 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR027417 | P-loop_NTPase |
Blast
The following BLAST results are available for this feature:
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