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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066579 ID=TCONS_00066579|Name=TCONS_00066579|organism=Clytia hemisphaerica|type=transcript|length=1781bpRun BLAST on NCBI protein sequence of TCONS_00066579-protein >TCONS_00066579-protein ID=TCONS_00066579-protein|Name=TCONS_00066579-protein|organism=Clytia hemisphaerica|type=polypeptide|length=502bp MANPFDFNEDEASRNFEKSVIFGNTGTSPRGSEARDFMKTSLAAANMLHDRun BLAST on NCBI transcript from alignment at scaffold_456:675914..729685- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00066579 ID=TCONS_00066579|Name=TCONS_00066579|organism=Clytia hemisphaerica|type=transcript|length=53772bp|location=Sequence derived from alignment at scaffold_456:675914..729685- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_456:675914..729685- >TCONS_00066579 ID=TCONS_00066579|Name=TCONS_00066579|organism=Clytia hemisphaerica|type=CDS|length=27162bp|location=Sequence derived from alignment at scaffold_456:675914..729685- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00066579 vs. Swiss-Prot (Human)
Match: SPE39 (Spermatogenesis-defective protein 39 homolog OS=Homo sapiens GN=VIPAS39 PE=1 SV=1) HSP 1 Score: 167.162 bits (422), Expect = 9.519e-45 Identity = 141/452 (31.19%), Postives = 221/452 (48.89%), Query Frame = 2
Query: 290 SSISLSVRGSAAYSNNKKQQRPPPKYNTADLLNALDADYPDGKRSHSNI----SKEQSYMGLDDHVHNKPQVS-AVEFQRISEELRNAKRTIENMKSEKWKSPPVRETVHRMVTGKDYFLEGYKALNQKQELLSSTVRTNDGNAIINVVLFLAKTLKPSLFIRELRKQTSAFSHYAFYLRQNEEWDRLENLYHEMCMVEDAATVRYEQICQEETETVSKVQALQNWIRDYGLKQEVTDMSSYIKDEISLLEKQRQIDEEDKKRFMQNANTAQAGSTEPVIQ-PQVPKVTGRPLITTISYCARYHFDNKSSRYY-PEHFKKTYQLTDKQYEWAVLPPRINLRRWNDVQELLTSTSWLKKKSESSAIGFEHVCAILHKANADAEILNKYLFLIGNADLRIKHASKFNAHHVVIETLVQTRDRDSMEAYRLKVGQQSQYRQKINDLLNNTSIKWR 1624
SIS S+R +A S + + R K + + P S S+ ++ S+ L D + + P S A E R E R+ S W SP +TV R+ GK LE +++L K +LL V +DGN I V++FL +TL + REL + A H +L++ + L +L+ + E+ A Y + + K + L+ + GL D S++I+D +LLE+Q I+ D+ + AG TE + P+ + PL+TT+ Y YH+ + P + KKT+++ DKQY L R LR WNDV L T+ +WL + + IGF V ILHK NA +IL +Y+ L+ + D ++ A+KF H VVI+T +DR + AYR KV + S +KI+ LL+++ I+W+
Sbjct: 65 GSISWSIRETAGNSGSTHEGREQLKSRNS-FSSYAQLPKPTSTYSLSSFFRGRTRPGSFQSLSDALSDTPAKSYAPELGRPKGEYRDY--------SNDW-SPS--DTVRRLRKGKVCSLERFRSLQDKLQLLEEAVSMHDGNVITAVLIFLKRTLSKEILFRELEVRQVALRHLIHFLKEIGDQKLLLDLFRFLDRTEELALSHYREHLNIQDPDKRK-EFLKTCV---GLPFSAED-SAHIQDHYTLLERQIIIEANDR-------HLESAGQTEIFRKHPRKASILNMPLVTTLFYSCFYHYTEAEGTFSSPVNLKKTFKIPDKQYVLTALAARAKLRAWNDVDALFTTKNWLGYTKKRAPIGFHRVVEILHKNNAPVQILQEYVNLVEDVDTKLNLATKFKCHDVVIDTYRDLKDRQQLLAYRSKVDKGSAEEEKIDALLSSSQIRWK 492 The following BLAST results are available for this feature:
BLAST of TCONS_00066579 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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