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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066590 ID=TCONS_00066590|Name=TCONS_00066590|organism=Clytia hemisphaerica|type=transcript|length=1794bpRun BLAST on NCBI protein sequence of TCONS_00066590-protein >TCONS_00066590-protein ID=TCONS_00066590-protein|Name=TCONS_00066590-protein|organism=Clytia hemisphaerica|type=polypeptide|length=257bp MKYILSVVLLLALIAIAESRWHGHHRHRHHRHLEKLHSKQRERDHTSRNMRun BLAST on NCBI transcript from alignment at scaffold_456:774471..794106- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00066590 ID=TCONS_00066590|Name=TCONS_00066590|organism=Clytia hemisphaerica|type=transcript|length=19636bp|location=Sequence derived from alignment at scaffold_456:774471..794106- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_456:774471..794106- >TCONS_00066590 ID=TCONS_00066590|Name=TCONS_00066590|organism=Clytia hemisphaerica|type=CDS|length=6192bp|location=Sequence derived from alignment at scaffold_456:774471..794106- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00066590 vs. Swiss-Prot (Human)
Match: RNT2 (Ribonuclease T2 OS=Homo sapiens GN=RNASET2 PE=1 SV=2) HSP 1 Score: 98.2117 bits (243), Expect = 1.320e-22 Identity = 54/153 (35.29%), Postives = 82/153 (53.59%), Query Frame = 3
Query: 753 NMEWDFFMLVTEWPFSSCEKENATHQHECVIPDIVDGWVLHGLWPSCNNGKYPATCTQE-KFDFSKVEDLNDRLMKYWPNLFAD-ESKTSFWKHEYEKHGTCAETVQGFETDHDFFKVTLDLRDKYDMGRVLSDQGITPRVIPYKGADVKKAI 1205
N EW ++V WP + CEK Q++C P D W +HGLWP + G C + F+ +++DL + YWP++ +++ FWKHE+EKHGTCA V + +F +L+L + D+ VL GI P + Y+ AD K A+
Sbjct: 31 NHEWKKLIMVQHWPETVCEK----IQNDCRDPP--DYWTIHGLWPDKSEG-----CNRSWPFNLEEIKDLLPEMRAYWPDVIHSFPNRSRFWKHEWEKHGTCAAQVDALNSQKKYFGRSLELYRELDLNSVLLKLGIKPSINYYQVADFKDAL 172 The following BLAST results are available for this feature:
BLAST of TCONS_00066590 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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