TCONS_00066593 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00066593
Unique Name	TCONS_00066593
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2788

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_456:899929..904572-
coding sequence from alignment at scaffold_456:899929..904572-

transcript sequence

>TCONS_00066593 ID=TCONS_00066593|Name=TCONS_00066593|organism=Clytia hemisphaerica|type=transcript|length=2788bp
aggcttccagaccagggttaTTATACGGACTACCCTTGGCCACTAGCCTA
TATGCTTCATTTTCTATTGGAAGGATACGGAGTCATACTGAGAAGTTTCC
ATTTTTCAACTTGTTAAATGGACTGACAAAGACTTAGAAAGGAATGCCGA
CTCTCGGGTCCTGACATATCTAATAAGCGTGATTGAATATACTCTAGAGG
AAACAATTGAATTGACATGTTGTTTTAATCAATAACACTTTATGGCTCAA
ATTCTAGCAtgcataacattttgcttgtaAAGACAATGACGTTTTTTTTT
GgagagaataaaaaaaaaaatgagaaatgcCAATAGCAAGATTGATATAA
ATAAAAGTCCAAGCTCAGTAATTGTATGTATAACGGCCGGAAAATGCTTA
TTCACTCGTATCGTAAGGGCTtctgttttattgaaaagttgaTTTAAAGT
TGCACATTTTCCTCTTGTTTCttacaaagtttttgtttgttttctgtCGG
GAGTTTACACTAATTTTTACATAGAGAGGTTAAAAACAGTCTGTATTCAG
ACTCATTATCTTTCGAATCGACAGTTTTATTTACTAATCCTAAGAGCTGA
ATAACAATGAATGTACTAATTAATCAAATAATAGGGATAACACTATTTCC
TTCCGcaattttatttagaaaaatttatcataataaacaaaaaatgacaa
caaaaaagaaagtgaatCTTGATGATATGGTGGATGACTGGGATTCATAT
ATTATGATTGAGACTAGTAAAGACGGTACTGTATGCACAACATCTGGATT
ACCGACTCCTAAAAGTTGTAACAAAATGCTGGTATTGGAACTAAATCATG
AGCTGGCTAGTGAGGTACTTTACGCACGTGGACATAATATACCTTGTGAT
GTTTACCTTAAATGTGATGACGGGACAATCTTTTCAGCACATAAAAATGT
TTTATCGGTAACTAGCCTGTATTTTAATGCTATGTTTCAGACTAACATGA
TCGAGAAATCACAAGCTATAATTGACATTCGATGCGTGACGTCAGAAGCT
TTGAAATATTTAATCGATTTTGCCTATTCGTCAACTTTGTATGTCTCGTT
TTACCAGATTTACGATTTACTGATGGCATCAAATATGTTATGTGTTGAAC
AGGTTGAGCATCAATGCGTTGCTTTTCTTGGTCAAAATTTGGATATTGAG
AACTGTATAGAAATATGGAGTCTAGCAGAAATGATCAATTGCGAACCATT
GTATAATgcttctttcaattttgtaCAAAATAACTTCAGACGGGTTTCTC
AAGAACTAGATTTTCTACAACTATCTTTCCAACAAATGGAATTAATATTA
AGCAATGATTATATAGATGTCTCATCCGAATCTGATGTTTTTGAGGCAAT
CATCAATTGGGTAAGCTATGACTCGATGGCTCGACTACCATATTTAGCTC
GCTTACTCCAGTATGTGCGATTTATGCTATTGAGCCGTAAATACTTGGCT
GATCGAGTTTTAAGAGAAAATTTGGTCATGTCAGACGAGAATTCAAGAAA
CATTGTTCTTCAAATTTTAGACAGATATATTTTACCGGAAAGGACTTACT
CATTAAATACAAATCAATCTTCAACTTCCCCAAGGCAAGCATCGAATCGA
AAAATATACGTCATTGGCGGAAAAGCAAGTGGAAAATGTAAATCGTCAAT
GGAATGCTACAACTTCAAAACCAACTCATGGCGCACGTTATCACGTATGA
AGTATCCACGTTATAACGCCGTAGCTGTAACACTCGACGGGAACCTCTAC
GTTTTGGGCGGATATTATAGAGGTAAAGATTTGAAAGTTGTGGAAAGGTA
CAACCCGATTACAGATGAATGGAGAGTGGTTTCCAGTCTACGTAAATGCA
AAGGTGCTTTATCAGCAATTTCCATTGACGGTTGGATATATGCTGTAGGT
GGATCCGAAGGTCACCAAGAATCATTAAGACACGCAGAACAGTATGACCC
TGTCTCTGATACTTGGACACAACTACCTGATATGTTAACACCAAGAAGTC
ATTTCGGTATTGGACGAATGTTTGGACAGCTACACGTTATTGGTGGTTTC
TCAGGAATATGCGAACTTGACCAGTGTGAATGTTTTGATCCTTCTCAGCG
CGAATGGAGAAGATTCAACAGTTTGAATACTTCAAGAATGAATCATGGTA
TTACTAATTTCAACAACCGGTTTTACGCATTTGGTGGGAAAAACTCAACT
GGTCTTGTTCAttcagttgaaaaatataaccCTGAGCTTAACATGTGGTT
AATAATCAAGACTAATCTCGACGTTAAGATTGGTATGGTTTGTGTTGGCA
AATCGAACGGCACCGGAAATAGTGTTTTCATTATTGGCGGGAAAAATGAG
AATGGCGAGGAGTCAAACTCTTCAACCGTCTTGACGTTTAAGCCAATCGG
ATCGGATCTGAATAATGAACAAATTGttccaatgaaagaaaaaagaattt
actCGGCTATAGCTTATCTTTGAGATTCTAAGAGTCAGAGAAGTTTTAGA
ACCCGGTGTTATTTGGGCCACTTATTCCAACTTCAGCTTATGTGTTATCA
TGTataatttttaatcaaaaatctaTGTTATTGTACATTTTTATACTCTT
GTTTTAAAGGATTTATCAGAAATATTATCATAAATAGTATCAGAAAGTCT
ATATACCCAGATGTATCTATAATCAAATTTATAGCATTTATTTacgaaaa
aagtttgtatattTCTATAGATATAAATAAGAATTAAT

Run BLAST on NCBI

protein sequence of Kelch like protein

>TCONS_00066593-protein ID=TCONS_00066593-protein|Name=Kelch like protein|organism=Clytia hemisphaerica|type=polypeptide|length=638bp
MNVLINQIIGITLFPSAILFRKIYHNKQKMTTKKKVNLDDMVDDWDSYIM
IETSKDGTVCTTSGLPTPKSCNKMLVLELNHELASEVLYARGHNIPCDVY
LKCDDGTIFSAHKNVLSVTSLYFNAMFQTNMIEKSQAIIDIRCVTSEALK
YLIDFAYSSTLYVSFYQIYDLLMASNMLCVEQVEHQCVAFLGQNLDIENC
IEIWSLAEMINCEPLYNASFNFVQNNFRRVSQELDFLQLSFQQMELILSN
DYIDVSSESDVFEAIINWVSYDSMARLPYLARLLQYVRFMLLSRKYLADR
VLRENLVMSDENSRNIVLQILDRYILPERTYSLNTNQSSTSPRQASNRKI
YVIGGKASGKCKSSMECYNFKTNSWRTLSRMKYPRYNAVAVTLDGNLYVL
GGYYRGKDLKVVERYNPITDEWRVVSSLRKCKGALSAISIDGWIYAVGGS
EGHQESLRHAEQYDPVSDTWTQLPDMLTPRSHFGIGRMFGQLHVIGGFSG
ICELDQCECFDPSQREWRRFNSLNTSRMNHGITNFNNRFYAFGGKNSTGL
VHSVEKYNPELNMWLIIKTNLDVKIGMVCVGKSNGTGNSVFIIGGKNENG
EESNSSTVLTFKPIGSDLNNEQIVPMKEKRIYSAIAYL

Run BLAST on NCBI

transcript from alignment at scaffold_456:899929..904572-

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00066593 ID=TCONS_00066593|Name=TCONS_00066593|organism=Clytia hemisphaerica|type=transcript|length=4644bp|location=Sequence derived from alignment at scaffold_456:899929..904572- (Clytia hemisphaerica)
AGGCTTCCAGACCAGGGTTATTATACGGACTACCCTTGGCCACTAGCCTA
TATGCTTCATTTTCTATTGGAAGGATACGGAGTCATACTGAGAAGTTTCC
ATTTTTCAACTTGTTAAATGGACTGACAAAGACTTAGAAAGGAATGCCGA
CTCTCGGGTCCTGACATATCTAATAAGCGTGATTGAATATACTCTAGAGG
AAACAATTGAATTGACATGTTGTTTTAATCAATAACACTTTATGGCTCAA
ATTCTAGCATGCATAACATTTTGCTTGTAAAGACAATGACGTTTTTTTTT
GGAGAGAATAAAAAAAAAAATGAGAAATGCCAATAGCAAGATTGATATAA
ATAAAAGTCCAAGCTCAGTAATTGTATGTATAACGGCCGGAAAATGCTTA
TTCACTCGTATCGTAAGGGCTTCTGTTTTATTGAAAAGTTGATTTAAAGT
TGCACATTTTCCTCTTGTTTCTTACAAAGTTTTTGTTTGTTTTCTGTCGG
GAGTTTACACTAATTTTTACATAGAGAGGTTAAAAACAGTCTGTATTCAG
ACTCATTATCTTTCGAATCGACAGTTTTATTTACTAATCCTAAGAGCTGA
ATAACAATGAATGTACTAATTAATCAAATAATAGGGATAACACTATTTCC
TTCCGCAATTTTATTTAGAAAAATTTATCATAATAAACAAAAAATGACAA
CAAAAAAGAAAGTGAATCTTGATGATATGGTGGATGACTGGGATTCATAT
ATTATGATTGAGACTAGTAAAGACGGTACTGTATGCACAACATCTGGATT
ACCGACTCCTAAAAGTTGTAACAAAATGCTGGTATTGGAACTAAATCATG
AGCTGGCTAGTGAGGTACTTTACGCACGTGGACATAATATACCTTGTGAT
GTTTACCTTAAATGTGATGACGGGACAATCTTTTCAGCACATAAAAATGT
TTTATCGGTAACTAGCCTGTATTTTAATGCTATGTTTCAGACTAACATGA
TCGAGAAATCACAAGCTATAATTGACATTCGATGCGTGACGTCAGAAGCT
TTGAAATATTTAATCGATTTTGCCTATTCGTCAACTTTGTATGTCTCGTT
TTACCAGATTTACGATTTACTGATGGCATCAAATATGTTATGTGTTGAAC
AGGTTGAGCATCAATGCGTTGCTTTTCTTGGTCAAAATTTGGATATTGAG
AACTGTATAGAAATATGGAGTCTAGCAGAAATGATCAATTGCGAACCATT
GTATAATGCTTCTTTCAATTTTGTACAAAATAACTTCAGACGGGTTTCTC
AAGAACTAGATTTTCTACAACTATCTTTCCAACAAATGGAATTAATATTA
AGCAATGATTATATAGATGTCTCATCCGAATCTGATGTTTTTGAGGCAAT
CATCAATTGGGTAAGCTATGACTCGATGGCTCGACTACCATATTTAGCTC
GCTTACTCCAGTATGTGCGATTTATGCTATTGAGCCGTAAATACTTGGCT
GATCGAGTTTTAAGAGAAAATTTGGTCATGTCAGACGAGAATTCAAGAAA
CATTGTTCTTCAAATTTTAGACAGATATATTTTACCGGAAAGGACTTACT
CATTAAATACAAATCAATCTTCAACTTCCCCAAGGCAAGCATCGAATCGA
AAAATATACGTCATTGGCGGAAAAGGTAGGCCAAACTAAACATATTTCAT
AGGAGAACGTCAAGTTATTTTATACACCCCTGTCTTAGTGACCCGGCGAA
GTTTTGACCCGGCACCTCAATACCCAATGGAAATTAAAATTAGGCCATTT
TGGGCATTCTTTTTTCCAGGTTATCCAACGGGGTGGATCTCATGGGGTCA
CTGATACAGTGGTATATTTACTGTCAATTCATAAATTATGAAGAACACTA
AGATCCTGCTCATCCTCTAGCGAAAAAAAGTTTCTTATAGAATATATAAG
AAGTATATCTATAGAGGTCTGCGATTCAGACTAGAAGAACACACCCCTGT
CTCGGTGACTTATGGTTTTTTTTCACCTGATCGGAGAAGAAGGGAGTTTG
ATACCAACAGCTGTGAAAATCTATGAATGAGTTTTGCTGGAATAGTTCAG
TGGGTCTGGTTTAACAAAAAAACATTGTCATTTTTTTGCAAACAAATCTT
GGCTGTAACTTATAGTTAACTATATCCAGTGTACGCAGAACATCCTACGG
ATCTCTTTAGAAGGTCCATTTCGGACGAAAAGGACGTCTGTTGGACGTTA
TACGGACGTTCAAACTGAAGCGTTCTCCGTCTCAAGGAAGTTGTGATTAG
ACTGAGACGGTCTATGGACGAACTGAAATGATTTGCACGTCATAAAGATG
TCCACTGAACTTTCTGTGTTCAAAGGGTGTTGACTGGTGAGGTTAATTCT
CTCGCTAATCGTTTGAAAATATATGAAAATATATTCTTTTTTCACTACGG
TTACCACATTTCCATTTAGCAAGTGGAAAATGTAAATCGTCAATGGAATG
CTACAACTTCAAAACCAACTCATGGCGCACGTTATCACGTATGAAGTATC
CACGTTATAACGCCGTAGCTGTAACACTCGACGGGAACCTCTACGTTTTG
GGCGGATATTATAGAGGTAAAGATTTGAAAGTTGTGGAAAGGTACAACCC
GATTACAGATGAATGGAGAGTGGTTTCCAGTCTACGTAAATGCAAAGGTA
AAGTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNTTTTATGTCAATGCTTCATAGAAAATAAAATTTGCA
CTAAAATTTAGGACTTAAGGCTGTTTATGGTTGATATATTATGGAACATT
CTAAATTCTTATTTCTTTTGAATTGCAAAATACACCTCTTTCCCATTAGA
ATTCTGTGGACTTAAGGCCGTTTTTGGAAAGCGTGCATGCCGAAATAGGG
GGTTATGGTCTTAAGTCAATTTTCGAAAAAATGGACTTAAGTCTGTCTTG
AATTGACACGGCGATATGTTAATTTCGTCTACGTTGTTATCATTGCAAGC
AACCATTGAATTTAATAATCAACCCCTTGTTTCTTTAATCCAGTAAATTT
TTTCGAATGATTTAAAATCTGCCTTGTTTGACTATGCGATCAAGTTGTCG
ACATCTCTCGCAGCTGGAATGCTACAGCCGGTGTACTTAATCCATTTTGG
ACATATTAGAGCAGCCAATCTGATTACATATCTTATAGTGTGAATAATCT
TCTTCATATTGAAAATGTTTTCCACTCGTCGATTTCTTTGCAACAAGTTA
TAACATTTTTCATTTTACAGTATCATTTTCTTTTCATACAGGACTTGAAA
TGAAATAAAAATGTTTTTGTTATAGACTTTGAAAATCATTTATTTACTGC
AGGTGCTTTATCAGCAATTTCCATTGACGGTTGGATATATGCTGTAGGTG
GATCCGAAGGTCACCAAGAATCATTAAGACACGCAGAACAGTATGACCCT
GTCTCTGATACTTGGACACAACTACCTGATATGTTAACACCAAGAAGTCA
TTTCGGTATTGGACGAATGTTTGGACAGCTACACGTTATTGGTGAGTGTG
TAGTACATAACAGTCAAAGTTCTCTAATTCTATATTTTTGAGGAATCAGG
GAAGCTCTCTTTGAATTTGAGGAAGCCAAATAATAAATAATGTTTGCGAA
CAAACGTTCGACTCACCAACCAACGTGCATTATTTGACAGTAAAAGAAAC
AAAATTGTAATAATACTGTCACCAAATAGTATTCGTGAAATTAAGTCCCC
ACGAATTTTAATCCCCGTAAAAATTAATCTCATGTCCCAAGCGTTTTGGG
CAAAGTCCAAAATCTCTTTTGAAATTTACAATTTGTTAATAATCTTAGGT
GGTTTCTCAGGAATATGCGAACTTGACCAGTGTGAATGTTTTGATCCTTC
TCAGCGCGAATGGAGAAGATTCAACAGTTTGAATACTTCAAGAATGAATC
ATGGTATTACTAATTTCAACAACCGGTTTTACGCATTTGGTGGGAAAAAC
TCAACTGGTCTTGTTCATTCAGTTGAAAAATATAACCCTGAGCTTAACAT
GTGGTTAATAATCAAGACTAATCTCGACGTTAAGATTGGTATGGTTTGTG
TTGGCAAATCGAACGGCACCGGAAATAGTGTTTTCATTATTGGCGGGAAA
AATGAGAATGGCGAGGAGTCAAACTCTTCAACCGTCTTGACGTTTAAGCC
AATCGGATCGGATCTGAATAATGAACAAATTGTTCCAATGAAAGAAAAAA
GAATTTACTCGGCTATAGCTTATCTTTGAGATTCTAAGAGTCAGAGAAGT
TTTAGAACCCGGTGTTATTTGGGCCACTTATTCCAACTTCAGCTTATGTG
TTATCATGTATAATTTTTAATCAAAAATCTATGTTATTGTACATTTTTAT
ACTCTTGTTTTAAAGGATTTATCAGAAATATTATCATAAATAGTATCAGA
AAGTCTATATACCCAGATGTATCTATAATCAAATTTATAGCATTTATTTA
CGAAAAAAGTTTGTATATTTCTATAGATATAAATAAGAATTAAT

Coding sequence (CDS) from alignment at scaffold_456:899929..904572-

>TCONS_00066593 ID=TCONS_00066593|Name=TCONS_00066593|organism=Clytia hemisphaerica|type=CDS|length=7668bp|location=Sequence derived from alignment at scaffold_456:899929..904572- (Clytia hemisphaerica)
GTGGTTTCTCAGGAATATGCGAACTTGACCAGTGTGAATGTTTTGATCCT
TCTCAGCGCGAATGGAGAAGATTCAACAGTTTGAATACTTCAAGAATGAA
TCATGGTATTACTAATTTCAACAACCGGTTTTACGCATTTGGTGGGAAAA
ACTCAACTGGTCTTGTTCATTCAGTTGAAAAATATAACCCTGAGCTTAAC
ATGTGGTTAATAATCAAGACTAATCTCGACGTTAAGATTGGTATGGTTTG
TGTTGGCAAATCGAACGGCACCGGAAATAGTGTTTTCATTATTGGCGGGA
AAAATGAGAATGGCGAGGAGTCAAACTCTTCAACCGTCTTGACGTTTAAG
CCAATCGGATCGGATCTGAATAATGAACAAATTGTTCCAATGAAAGAAAA
AAGAATTTACTCGGCTATAGCTTATCTTTGAGTGCTTTATCAGCAATTTC
CATTGACGGTTGGATATATGCTGTAGGTGGATCCGAAGGTCACCAAGAAT
CATTAAGACACGCAGAACAGTATGACCCTGTCTCTGATACTTGGACACAA
CTACCTGATATGTTAACACCAAGAAGTCATTTCGGTATTGGACGAATGTT
TGGACAGCTACACGTTATTGCAAGTGGAAAATGTAAATCGTCAATGGAAT
GCTACAACTTCAAAACCAACTCATGGCGCACGTTATCACGTATGAAGTAT
CCACGTTATAACGCCGTAGCTGTAACACTCGACGGGAACCTCTACGTTTT
GGGCGGATATTATAGAGGTAAAGATTTGAAAGTTGTGGAAAGGTACAACC
CGATTACAGATGAATGGAGAGTGGTTTCCAGTCTACGTAAATGCAAAGAT
GAATGTACTAATTAATCAAATAATAGGGATAACACTATTTCCTTCCGCAA
TTTTATTTAGAAAAATTTATCATAATAAACAAAAAATGACAACAAAAAAG
AAAGTGAATCTTGATGATATGGTGGATGACTGGGATTCATATATTATGAT
TGAGACTAGTAAAGACGGTACTGTATGCACAACATCTGGATTACCGACTC
CTAAAAGTTGTAACAAAATGCTGGTATTGGAACTAAATCATGAGCTGGCT
AGTGAGGTACTTTACGCACGTGGACATAATATACCTTGTGATGTTTACCT
TAAATGTGATGACGGGACAATCTTTTCAGCACATAAAAATGTTTTATCGG
TAACTAGCCTGTATTTTAATGCTATGTTTCAGACTAACATGATCGAGAAA
TCACAAGCTATAATTGACATTCGATGCGTGACGTCAGAAGCTTTGAAATA
TTTAATCGATTTTGCCTATTCGTCAACTTTGTATGTCTCGTTTTACCAGA
TTTACGATTTACTGATGGCATCAAATATGTTATGTGTTGAACAGGTTGAG
CATCAATGCGTTGCTTTTCTTGGTCAAAATTTGGATATTGAGAACTGTAT
AGAAATATGGAGTCTAGCAGAAATGATCAATTGCGAACCATTGTATAATG
CTTCTTTCAATTTTGTACAAAATAACTTCAGACGGGTTTCTCAAGAACTA
GATTTTCTACAACTATCTTTCCAACAAATGGAATTAATATTAAGCAATGA
TTATATAGATGTCTCATCCGAATCTGATGTTTTTGAGGCAATCATCAATT
GGGTAAGCTATGACTCGATGGCTCGACTACCATATTTAGCTCGCTTACTC
CAGTATGTGCGATTTATGCTATTGAGCCGTAAATACTTGGCTGATCGAGT
TTTAAGAGAAAATTTGGTCATGTCAGACGAGAATTCAAGAAACATTGTTC
TTCAAATTTTAGACAGATATATTTTACCGGAAAGGACTTACTCATTAAAT
ACAAATCAATCTTCAACTTCCCCAAGGCAAGCATCGAATCGAAAAATATA
CGTCATTGGCGGAAAAGGTGGTTTCTCAGGAATATGCGAACTTGACCAGT
GTGAATGTTTTGATCCTTCTCAGCGCGAATGGAGAAGATTCAACAGTTTG
AATACTTCAAGAATGAATCATGGTATTACTAATTTCAACAACCGGTTTTA
CGCATTTGGTGGGAAAAACTCAACTGGTCTTGTTCATTCAGTTGAAAAAT
ATAACCCTGAGCTTAACATGTGGTTAATAATCAAGACTAATCTCGACGTT
AAGATTGGTATGGTTTGTGTTGGCAAATCGAACGGCACCGGAAATAGTGT
TTTCATTATTGGCGGGAAAAATGAGAATGGCGAGGAGTCAAACTCTTCAA
CCGTCTTGACGTTTAAGCCAATCGGATCGGATCTGAATAATGAACAAATT
GTTCCAATGAAAGAAAAAAGAATTTACTCGGCTATAGCTTATCTTTGAGT
GCTTTATCAGCAATTTCCATTGACGGTTGGATATATGCTGTAGGTGGATC
CGAAGGTCACCAAGAATCATTAAGACACGCAGAACAGTATGACCCTGTCT
CTGATACTTGGACACAACTACCTGATATGTTAACACCAAGAAGTCATTTC
GGTATTGGACGAATGTTTGGACAGCTACACGTTATTGCAAGTGGAAAATG
TAAATCGTCAATGGAATGCTACAACTTCAAAACCAACTCATGGCGCACGT
TATCACGTATGAAGTATCCACGTTATAACGCCGTAGCTGTAACACTCGAC
GGGAACCTCTACGTTTTGGGCGGATATTATAGAGGTAAAGATTTGAAAGT
TGTGGAAAGGTACAACCCGATTACAGATGAATGGAGAGTGGTTTCCAGTC
TACGTAAATGCAAAGATGAATGTACTAATTAATCAAATAATAGGGATAAC
ACTATTTCCTTCCGCAATTTTATTTAGAAAAATTTATCATAATAAACAAA
AAATGACAACAAAAAAGAAAGTGAATCTTGATGATATGGTGGATGACTGG
GATTCATATATTATGATTGAGACTAGTAAAGACGGTACTGTATGCACAAC
ATCTGGATTACCGACTCCTAAAAGTTGTAACAAAATGCTGGTATTGGAAC
TAAATCATGAGCTGGCTAGTGAGGTACTTTACGCACGTGGACATAATATA
CCTTGTGATGTTTACCTTAAATGTGATGACGGGACAATCTTTTCAGCACA
TAAAAATGTTTTATCGGTAACTAGCCTGTATTTTAATGCTATGTTTCAGA
CTAACATGATCGAGAAATCACAAGCTATAATTGACATTCGATGCGTGACG
TCAGAAGCTTTGAAATATTTAATCGATTTTGCCTATTCGTCAACTTTGTA
TGTCTCGTTTTACCAGATTTACGATTTACTGATGGCATCAAATATGTTAT
GTGTTGAACAGGTTGAGCATCAATGCGTTGCTTTTCTTGGTCAAAATTTG
GATATTGAGAACTGTATAGAAATATGGAGTCTAGCAGAAATGATCAATTG
CGAACCATTGTATAATGCTTCTTTCAATTTTGTACAAAATAACTTCAGAC
GGGTTTCTCAAGAACTAGATTTTCTACAACTATCTTTCCAACAAATGGAA
TTAATATTAAGCAATGATTATATAGATGTCTCATCCGAATCTGATGTTTT
TGAGGCAATCATCAATTGGGTAAGCTATGACTCGATGGCTCGACTACCAT
ATTTAGCTCGCTTACTCCAGTATGTGCGATTTATGCTATTGAGCCGTAAA
TACTTGGCTGATCGAGTTTTAAGAGAAAATTTGGTCATGTCAGACGAGAA
TTCAAGAAACATTGTTCTTCAAATTTTAGACAGATATATTTTACCGGAAA
GGACTTACTCATTAAATACAAATCAATCTTCAACTTCCCCAAGGCAAGCA
TCGAATCGAAAAATATACGTCATTGGCGGAAAAGGTGGTTTCTCAGGAAT
ATGCGAACTTGACCAGTGTGAATGTTTTGATCCTTCTCAGCGCGAATGGA
GAAGATTCAACAGTTTGAATACTTCAAGAATGAATCATGGTATTACTAAT
TTCAACAACCGGTTTTACGCATTTGGTGGGAAAAACTCAACTGGTCTTGT
TCATTCAGTTGAAAAATATAACCCTGAGCTTAACATGTGGTTAATAATCA
AGACTAATCTCGACGTTAAGATTGGTATGGTTTGTGTTGGCAAATCGAAC
GGCACCGGAAATAGTGTTTTCATTATTGGCGGGAAAAATGAGAATGGCGA
GGAGTCAAACTCTTCAACCGTCTTGACGTTTAAGCCAATCGGATCGGATC
TGAATAATGAACAAATTGTTCCAATGAAAGAAAAAAGAATTTACTCGGCT
ATAGCTTATCTTTGAGTGCTTTATCAGCAATTTCCATTGACGGTTGGATA
TATGCTGTAGGTGGATCCGAAGGTCACCAAGAATCATTAAGACACGCAGA
ACAGTATGACCCTGTCTCTGATACTTGGACACAACTACCTGATATGTTAA
CACCAAGAAGTCATTTCGGTATTGGACGAATGTTTGGACAGCTACACGTT
ATTGCAAGTGGAAAATGTAAATCGTCAATGGAATGCTACAACTTCAAAAC
CAACTCATGGCGCACGTTATCACGTATGAAGTATCCACGTTATAACGCCG
TAGCTGTAACACTCGACGGGAACCTCTACGTTTTGGGCGGATATTATAGA
GGTAAAGATTTGAAAGTTGTGGAAAGGTACAACCCGATTACAGATGAATG
GAGAGTGGTTTCCAGTCTACGTAAATGCAAAGATGAATGTACTAATTAAT
CAAATAATAGGGATAACACTATTTCCTTCCGCAATTTTATTTAGAAAAAT
TTATCATAATAAACAAAAAATGACAACAAAAAAGAAAGTGAATCTTGATG
ATATGGTGGATGACTGGGATTCATATATTATGATTGAGACTAGTAAAGAC
GGTACTGTATGCACAACATCTGGATTACCGACTCCTAAAAGTTGTAACAA
AATGCTGGTATTGGAACTAAATCATGAGCTGGCTAGTGAGGTACTTTACG
CACGTGGACATAATATACCTTGTGATGTTTACCTTAAATGTGATGACGGG
ACAATCTTTTCAGCACATAAAAATGTTTTATCGGTAACTAGCCTGTATTT
TAATGCTATGTTTCAGACTAACATGATCGAGAAATCACAAGCTATAATTG
ACATTCGATGCGTGACGTCAGAAGCTTTGAAATATTTAATCGATTTTGCC
TATTCGTCAACTTTGTATGTCTCGTTTTACCAGATTTACGATTTACTGAT
GGCATCAAATATGTTATGTGTTGAACAGGTTGAGCATCAATGCGTTGCTT
TTCTTGGTCAAAATTTGGATATTGAGAACTGTATAGAAATATGGAGTCTA
GCAGAAATGATCAATTGCGAACCATTGTATAATGCTTCTTTCAATTTTGT
ACAAAATAACTTCAGACGGGTTTCTCAAGAACTAGATTTTCTACAACTAT
CTTTCCAACAAATGGAATTAATATTAAGCAATGATTATATAGATGTCTCA
TCCGAATCTGATGTTTTTGAGGCAATCATCAATTGGGTAAGCTATGACTC
GATGGCTCGACTACCATATTTAGCTCGCTTACTCCAGTATGTGCGATTTA
TGCTATTGAGCCGTAAATACTTGGCTGATCGAGTTTTAAGAGAAAATTTG
GTCATGTCAGACGAGAATTCAAGAAACATTGTTCTTCAAATTTTAGACAG
ATATATTTTACCGGAAAGGACTTACTCATTAAATACAAATCAATCTTCAA
CTTCCCCAAGGCAAGCATCGAATCGAAAAATATACGTCATTGGCGGAAAA
GGTGGTTTCTCAGGAATATGCGAACTTGACCAGTGTGAATGTTTTGATCC
TTCTCAGCGCGAATGGAGAAGATTCAACAGTTTGAATACTTCAAGAATGA
ATCATGGTATTACTAATTTCAACAACCGGTTTTACGCATTTGGTGGGAAA
AACTCAACTGGTCTTGTTCATTCAGTTGAAAAATATAACCCTGAGCTTAA
CATGTGGTTAATAATCAAGACTAATCTCGACGTTAAGATTGGTATGGTTT
GTGTTGGCAAATCGAACGGCACCGGAAATAGTGTTTTCATTATTGGCGGG
AAAAATGAGAATGGCGAGGAGTCAAACTCTTCAACCGTCTTGACGTTTAA
GCCAATCGGATCGGATCTGAATAATGAACAAATTGTTCCAATGAAAGAAA
AAAGAATTTACTCGGCTATAGCTTATCTTTGAGTGCTTTATCAGCAATTT
CCATTGACGGTTGGATATATGCTGTAGGTGGATCCGAAGGTCACCAAGAA
TCATTAAGACACGCAGAACAGTATGACCCTGTCTCTGATACTTGGACACA
ACTACCTGATATGTTAACACCAAGAAGTCATTTCGGTATTGGACGAATGT
TTGGACAGCTACACGTTATTGCAAGTGGAAAATGTAAATCGTCAATGGAA
TGCTACAACTTCAAAACCAACTCATGGCGCACGTTATCACGTATGAAGTA
TCCACGTTATAACGCCGTAGCTGTAACACTCGACGGGAACCTCTACGTTT
TGGGCGGATATTATAGAGGTAAAGATTTGAAAGTTGTGGAAAGGTACAAC
CCGATTACAGATGAATGGAGAGTGGTTTCCAGTCTACGTAAATGCAAAGA
TGAATGTACTAATTAATCAAATAATAGGGATAACACTATTTCCTTCCGCA
ATTTTATTTAGAAAAATTTATCATAATAAACAAAAAATGACAACAAAAAA
GAAAGTGAATCTTGATGATATGGTGGATGACTGGGATTCATATATTATGA
TTGAGACTAGTAAAGACGGTACTGTATGCACAACATCTGGATTACCGACT
CCTAAAAGTTGTAACAAAATGCTGGTATTGGAACTAAATCATGAGCTGGC
TAGTGAGGTACTTTACGCACGTGGACATAATATACCTTGTGATGTTTACC
TTAAATGTGATGACGGGACAATCTTTTCAGCACATAAAAATGTTTTATCG
GTAACTAGCCTGTATTTTAATGCTATGTTTCAGACTAACATGATCGAGAA
ATCACAAGCTATAATTGACATTCGATGCGTGACGTCAGAAGCTTTGAAAT
ATTTAATCGATTTTGCCTATTCGTCAACTTTGTATGTCTCGTTTTACCAG
ATTTACGATTTACTGATGGCATCAAATATGTTATGTGTTGAACAGGTTGA
GCATCAATGCGTTGCTTTTCTTGGTCAAAATTTGGATATTGAGAACTGTA
TAGAAATATGGAGTCTAGCAGAAATGATCAATTGCGAACCATTGTATAAT
GCTTCTTTCAATTTTGTACAAAATAACTTCAGACGGGTTTCTCAAGAACT
AGATTTTCTACAACTATCTTTCCAACAAATGGAATTAATATTAAGCAATG
ATTATATAGATGTCTCATCCGAATCTGATGTTTTTGAGGCAATCATCAAT
TGGGTAAGCTATGACTCGATGGCTCGACTACCATATTTAGCTCGCTTACT
CCAGTATGTGCGATTTATGCTATTGAGCCGTAAATACTTGGCTGATCGAG
TTTTAAGAGAAAATTTGGTCATGTCAGACGAGAATTCAAGAAACATTGTT
CTTCAAATTTTAGACAGATATATTTTACCGGAAAGGACTTACTCATTAAA
TACAAATCAATCTTCAACTTCCCCAAGGCAAGCATCGAATCGAAAAATAT
ACGTCATTGGCGGAAAAG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_041642	XLOC_041642	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00066593-exon-scaffold_456-1575043694:902898..904572	TCONS_00066593-exon-scaffold_456-1575043694:902898..904572	Clytia hemisphaerica	exon
TCONS_00066593-exon-scaffold_456-1575043694:901876..902103	TCONS_00066593-exon-scaffold_456-1575043694:901876..902103	Clytia hemisphaerica	exon
TCONS_00066593-exon-scaffold_456-1575043694:900932..901120	TCONS_00066593-exon-scaffold_456-1575043694:900932..901120	Clytia hemisphaerica	exon
TCONS_00066593-exon-scaffold_456-1575043694:899929..900624	TCONS_00066593-exon-scaffold_456-1575043694:899929..900624	Clytia hemisphaerica	exon
TCONS_00066593-exon-scaffold_456-1510915933:902898..904572	TCONS_00066593-exon-scaffold_456-1510915933:902898..904572	Clytia hemisphaerica	exon
TCONS_00066593-exon-scaffold_456-1510915933:901876..902103	TCONS_00066593-exon-scaffold_456-1510915933:901876..902103	Clytia hemisphaerica	exon
TCONS_00066593-exon-scaffold_456-1510915933:900932..901120	TCONS_00066593-exon-scaffold_456-1510915933:900932..901120	Clytia hemisphaerica	exon
TCONS_00066593-exon-scaffold_456-1510915933:899929..900624	TCONS_00066593-exon-scaffold_456-1510915933:899929..900624	Clytia hemisphaerica	exon
TCONS_00066593-exon-scaffold_456-1491911889:902898..904572	TCONS_00066593-exon-scaffold_456-1491911889:902898..904572	Clytia hemisphaerica	exon
TCONS_00066593-exon-scaffold_456-1491911889:901876..902103	TCONS_00066593-exon-scaffold_456-1491911889:901876..902103	Clytia hemisphaerica	exon
TCONS_00066593-exon-scaffold_456-1491911889:900932..901120	TCONS_00066593-exon-scaffold_456-1491911889:900932..901120	Clytia hemisphaerica	exon
TCONS_00066593-exon-scaffold_456-1491911889:899929..900624	TCONS_00066593-exon-scaffold_456-1491911889:899929..900624	Clytia hemisphaerica	exon

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
Kelch like protein	TCONS_00066593-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_456	supercontig	scaffold_456:899929..904572 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.81052	4.31952	0.545149	0.350483	0.890461	0.688995	0.17686	0.132459	0.0579612	0.157948	0.0557483	0.0183234	0.969788	0.950127	2.40589	3.04294	5.73141	6.83772	0.453324	0.443766	8.27289	7.55145	5.75708	6.91177	4.15027	3.61174	1.2638	0.785103	2.94683	3.40681

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR011705	BACK
IPR006652	Kelch_1
IPR000210	BTB/POZ_dom
IPR015915	Kelch-typ_b-propeller
IPR017096	BTB-kelch_protein
IPR011333	SKP1/BTB/POZ

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

Blast

[Close]

BLAST of TCONS_00066593 vs. Swiss-Prot (Human)
Match: KLH28 (Kelch-like protein 28 OS=Homo sapiens GN=KLHL28 PE=2 SV=2)

HSP 1 Score: 292.352 bits (747), Expect = 5.193e-87
Identity = 173/531 (32.58%), Postives = 266/531 (50.09%), Query Frame = 1

Query:  877 RGHNIPCDVYLKCDDGTIFSAHKNVLSVTSLYFNAMFQTNMIEKSQAIIDIRCVTSEALKYLIDFAYSSTLYVSFYQIYDLLMASNMLCVEQVEHQCVAFLGQNLDIENCIEIWSLAEMINCEPLYNASFNFVQNNFRRVSQELDFLQLSFQQMELILSNDYIDVSSESDVFEAIINWVSYDSMARLPYLARLLQYVRFMLLSRKYLADRVLRENLVMSDENSRNIVLQILDRYILPERTYSLNTNQSSTSPRQAS-----------------------------------------------NRKIYVIGGKASG--------KCKSSMECYNFKTNSWRTLSRMKYPRYNAVAVTLDGNLYVLGGYYRGKDLKVVERYNPITDEWRVVSSLRKCKGALSAISIDGWIYAVGG-SEGHQESLRHAEQYDPVSDTWTQLPDMLTPRSHFGIGRMFGQLHVIGGFSGICELDQCECFDPSQREWRRFNSLNTSRMNHGITNFNNRFYAFGGKNSTGLVHSVEKYNPELNMWL 2301
            R H+  CD+ L+  D  I  AHK VL+  S YF AMF  N+ EK  + ++ +C+   AL+ ++++AY+ T+++S   +  LL A+N+L ++ V  +C AFL   LD  NCI I   AE   C  LY A+  ++  NF  V Q  +F +L+   ++ I+SND ++V++E  VF A+ +W+ YD   R  YLA+LL  VR  LLS K+L       +L+  D   ++++ + L  + +PE   S  T    T PR A                                                ++K+YVIGG A+         K ++S+EC+N  TN+W +L RM   R     V L G LY LGGY     L+ VE+Y P   +W+ V+ +   +   +A  +DG IYA+GG    H  S+   E+YDP  D+W  +  M   R HFG+G M G + V+GG +G+  L   E +DP Q +W     +   R   G    +N  Y  GG + +  +++V+KY+P  + WL
Sbjct:   29 RQHHELCDIILRVGDVKI-HAHKVVLASVSPYFKAMFTGNLSEKENSEVEFQCIDETALQAIVEYAYTGTVFISQDTVESLLPAANLLQIKLVLKECCAFLESQLDPGNCIGISRFAETYGCRDLYLAATKYICQNFEAVCQTEEFFELTHADLDEIVSNDCLNVATEETVFYALESWIKYDVQERQKYLAQLLNSVRLPLLSVKFLTRLYEANHLIRDDRTCKHLLNEALKYHFMPEHRLSHQT-VLMTRPRCAPKVLCAVGGKSGLFACLDSVEMYFPQNDSWIGLAPLNIPRYEFGICVLDQKVYVIGGIATNVRPGVTIRKHENSVECWNPDTNTWTSLERMNESRSTLGVVVLAGELYALGGYDGQSYLQSVEKYIPKIRKWQPVAPMTTTRSCFAAAVLDGMIYAIGGYGPAHMNSV---ERYDPSKDSWEMVASMADKRIHFGVGVMLGFIFVVGGHNGVSHLSSIERYDPHQNQWTVCRPMKEPRTGVGAAVIDNYLYVVGGHSGSSYLNTVQKYDPISDTWL 554

The following BLAST results are available for this feature:

BLAST of TCONS_00066593 vs. Swiss-Prot (Human)

BLAST of TCONS_00066593 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
KLH28	5.193e-87	32.58	Kelch-like protein 28 OS=Homo sapiens GN=KLHL28 PE...	[more]

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TCONS_00066593 (transcript) - C. hemisphaerica