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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066595 ID=TCONS_00066595|Name=TCONS_00066595|organism=Clytia hemisphaerica|type=transcript|length=1274bp
ctcaTGATAACAGAATGACtgagaaaaacaataacaaatctCTGAAacga
aatctgattggtttaacATGTGGTGGTAGTGCAGGGTTATTTTACGCCCT
CGGAAACGCCCTTATTCAATATATATACCGCCAAAACCCACACGTGGACT
TGTCTGAAGACCAGGTGATTTTTGTTCGATCTGTTATTCAATTTGTGATG
ATTGGTGCTATTCTTCTTTGGAAACAAATGAGTCCTTGGACAGGATCATG
GAAAATGTTTGGACGGTTATGGTTTATGGGCATGACTAAAGTAATAAGTT
TAACCTTCTTTTACCGTGCTTTGAGAGTATTACCTTTAGGAGATGCGACT
GTGATTTTATTTACTAATCCAGTTTTTACACTCTTTTTGggaattatttt
tctaaatgaAGCACGTAGCGCCTTCAATATCATTTTTGGTTTAGTGAGTT
TTCTCGGGGTGGCAATAATTGCAGACcctaaattatttttctctgaaCAA
ACCTTACTAAACGGACCAAGTAATACAACTATGACTTCAATCAATGCAAC
ATCTCCAGTCTTGAATGGGACTAATATCGAAGAAGCTGCACCCTACAGCC
ATATTGTCGCTGTTGGGTTTGGTCTCATGGGTGCAATCATGTTAAGTTTA
TATATGGTGATATTAAAATATAATACAAGTGATAAAGTCGATTTTAGAGT
TGCCCTGTTTTACCCAAGTATGTGCGGACTCTGGTTACCGCCTATTGTTC
AGGCGGTCGAGCAGCGCCCCTTTGAATGGAACCAACTAACATATGACTTT
TGGCTTATAATGCTTGCAGGCGCCGTATCATATTTTATCGCCATGTTCCT
AATGGCGTACGCCCTGTATATGGCGGAAGCAGGTCCAGCCGCCTTAGTTC
GTAATGCGGAAGTGATTTTCGCTCTTATCTTTGAAGTTGTAATAATGCAG
CAGATTCCGATGTTGTTCAGCATTGCGGGCGTGGTTTTGATTTTATGGTG
CACCTCTATGATTGTCTTTAATCGGATCTTCAGTTTGGAgcaaaaaatct
gtcaaaaatgcTGTAAAAGAAACACAATTGATGACACATTGACAGTCAGC
ATTATTGAAAGCGAAATTGAAAATACTGGAAAAGAGGCTAATGAAGACAC
TAGCCTGAATCCAACAGATGGAAAGAACATAACATATACAAGATTTTAGT
AGTTTTTTAGATGTTTTAGATCAATAATATGTTGAATAGCTTTCAAGTTT
GTAcacaaattctgaaaaataaag Run BLAST on NCBI protein sequence of TCONS_00066595-protein >TCONS_00066595-protein ID=TCONS_00066595-protein|Name=TCONS_00066595-protein|organism=Clytia hemisphaerica|type=polypeptide|length=398bp
HDNRMTEKNNNKSLKRNLIGLTCGGSAGLFYALGNALIQYIYRQNPHVDL
SEDQVIFVRSVIQFVMIGAILLWKQMSPWTGSWKMFGRLWFMGMTKVISL
TFFYRALRVLPLGDATVILFTNPVFTLFLGIIFLNEARSAFNIIFGLVSF
LGVAIIADPKLFFSEQTLLNGPSNTTMTSINATSPVLNGTNIEEAAPYSH
IVAVGFGLMGAIMLSLYMVILKYNTSDKVDFRVALFYPSMCGLWLPPIVQ
AVEQRPFEWNQLTYDFWLIMLAGAVSYFIAMFLMAYALYMAEAGPAALVR
NAEVIFALIFEVVIMQQIPMLFSIAGVVLILWCTSMIVFNRIFSLEQKIC
QKCCKRNTIDDTLTVSIIESEIENTGKEANEDTSLNPTDGKNITYTRF Run BLAST on NCBI transcript from alignment at scaffold_456:41557..42830 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066595 ID=TCONS_00066595|Name=TCONS_00066595|organism=Clytia hemisphaerica|type=transcript|length=1274bp|location=Sequence derived from alignment at scaffold_456:41557..42830 (Clytia hemisphaerica)
ctttatttttcagaatttgtgTACAAACTTGAAAGCTATTCAACATATTA
TTGATCTAAAACATCTAAAAAACTACTAAAATCTTGTATATGTTATGTTC
TTTCCATCTGTTGGATTCAGGCTAGTGTCTTCATTAGCCTCTTTTCCAGT
ATTTTCAATTTCGCTTTCAATAATGCTGACTGTCAATGTGTCATCAATTG
TGTTTCTTTTACAgcatttttgacagattttttgcTCCAAACTGAAGATC
CGATTAAAGACAATCATAGAGGTGCACCATAAAATCAAAACCACGCCCGC
AATGCTGAACAACATCGGAATCTGCTGCATTATTACAACTTCAAAGATAA
GAGCGAAAATCACTTCCGCATTACGAACTAAGGCGGCTGGACCTGCTTCC
GCCATATACAGGGCGTACGCCATTAGGAACATGGCGATAAAATATGATAC
GGCGCCTGCAAGCATTATAAGCCAAAAGTCATATGTTAGTTGGTTCCATT
CAAAGGGGCGCTGCTCGACCGCCTGAACAATAGGCGGTAACCAGAGTCCG
CACATACTTGGGTAAAACAGGGCAACTCTAAAATCGACTTTATCACTTGT
ATTATATTTTAATATCACCATATATAAACTTAACATGATTGCACCCATGA
GACCAAACCCAACAGCGACAATATGGCTGTAGGGTGCAGCTTCTTCGATA
TTAGTCCCATTCAAGACTGGAGATGTTGCATTGATTGAAGTCATAGTTGT
ATTACTTGGTCCGTTTAGTAAGGTTTGttcagagaaaaataatttaggGT
CTGCAATTATTGCCACCCCGAGAAAACTCACTAAACCAAAAATGATATTG
AAGGCGCTACGTGCTtcatttagaaaaataattccCAAAAAGAGTGTAAA
AACTGGATTAGTAAATAAAATCACAGTCGCATCTCCTAAAGGTAATACTC
TCAAAGCACGGTAAAAGAAGGTTAAACTTATTACTTTAGTCATGCCCATA
AACCATAACCGTCCAAACATTTTCCATGATCCTGTCCAAGGACTCATTTG
TTTCCAAAGAAGAATAGCACCAATCATCACAAATTGAATAACAGATCGAA
CAAAAATCACCTGGTCTTCAGACAAGTCCACGTGTGGGTTTTGGCGGTAT
ATATATTGAATAAGGGCGTTTCCGAGGGCGTAAAATAACCCTGCACTACC
ACCACATgttaaaccaatcagatttcgtTTCAGagatttgttattgtttt
tctcaGTCATTCTGTTATCAtgag Coding sequence (CDS) from alignment at scaffold_456:41557..42830 >TCONS_00066595 ID=TCONS_00066595|Name=TCONS_00066595|organism=Clytia hemisphaerica|type=CDS|length=1197bp|location=Sequence derived from alignment at scaffold_456:41557..42830 (Clytia hemisphaerica)
CTAAAATCTTGTATATGTTATGTTCTTTCCATCTGTTGGATTCAGGCTAG
TGTCTTCATTAGCCTCTTTTCCAGTATTTTCAATTTCGCTTTCAATAATG
CTGACTGTCAATGTGTCATCAATTGTGTTTCTTTTACAgcatttttgaca
gattttttgcTCCAAACTGAAGATCCGATTAAAGACAATCATAGAGGTGC
ACCATAAAATCAAAACCACGCCCGCAATGCTGAACAACATCGGAATCTGC
TGCATTATTACAACTTCAAAGATAAGAGCGAAAATCACTTCCGCATTACG
AACTAAGGCGGCTGGACCTGCTTCCGCCATATACAGGGCGTACGCCATTA
GGAACATGGCGATAAAATATGATACGGCGCCTGCAAGCATTATAAGCCAA
AAGTCATATGTTAGTTGGTTCCATTCAAAGGGGCGCTGCTCGACCGCCTG
AACAATAGGCGGTAACCAGAGTCCGCACATACTTGGGTAAAACAGGGCAA
CTCTAAAATCGACTTTATCACTTGTATTATATTTTAATATCACCATATAT
AAACTTAACATGATTGCACCCATGAGACCAAACCCAACAGCGACAATATG
GCTGTAGGGTGCAGCTTCTTCGATATTAGTCCCATTCAAGACTGGAGATG
TTGCATTGATTGAAGTCATAGTTGTATTACTTGGTCCGTTTAGTAAGGTT
TGttcagagaaaaataatttaggGTCTGCAATTATTGCCACCCCGAGAAA
ACTCACTAAACCAAAAATGATATTGAAGGCGCTACGTGCTtcatttagaa
aaataattccCAAAAAGAGTGTAAAAACTGGATTAGTAAATAAAATCACA
GTCGCATCTCCTAAAGGTAATACTCTCAAAGCACGGTAAAAGAAGGTTAA
ACTTATTACTTTAGTCATGCCCATAAACCATAACCGTCCAAACATTTTCC
ATGATCCTGTCCAAGGACTCATTTGTTTCCAAAGAAGAATAGCACCAATC
ATCACAAATTGAATAACAGATCGAACAAAAATCACCTGGTCTTCAGACAA
GTCCACGTGTGGGTTTTGGCGGTATATATATTGAATAAGGGCGTTTCCGA
GGGCGTAAAATAACCCTGCACTACCACCACATgttaaaccaatcagattt
cgtTTCAGagatttgttattgtttttctcaGTCATTCTGTTATCAtg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066595-exon-scaffold_456-1491911889:41557..42830 | TCONS_00066595-exon-scaffold_456-1491911889:41557..42830 | Clytia hemisphaerica | exon |
| TCONS_00066595-exon-scaffold_456-1510915933:41557..42830 | TCONS_00066595-exon-scaffold_456-1510915933:41557..42830 | Clytia hemisphaerica | exon |
| TCONS_00066595-exon-scaffold_456-1575043694:41557..42830 | TCONS_00066595-exon-scaffold_456-1575043694:41557..42830 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_456 | supercontig | scaffold_456:41557..42830 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000620 | EamA_dom |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
| GO:0016020 | membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016021 |
integral component of membrane |
| cellular_component |
GO:0016020 |
membrane |
Blast
The following BLAST results are available for this feature:
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