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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066637 ID=TCONS_00066637|Name=TCONS_00066637|organism=Clytia hemisphaerica|type=transcript|length=2751bpRun BLAST on NCBI protein sequence of TCONS_00066637-protein >TCONS_00066637-protein ID=TCONS_00066637-protein|Name=TCONS_00066637-protein|organism=Clytia hemisphaerica|type=polypeptide|length=687bp CFRTENFTLVFIKSKGKMKTILLINALFLVNICHGVTYTYPGKGFTKFPIRun BLAST on NCBI transcript from alignment at scaffold_457:218539..226731+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00066637 ID=TCONS_00066637|Name=TCONS_00066637|organism=Clytia hemisphaerica|type=transcript|length=8193bp|location=Sequence derived from alignment at scaffold_457:218539..226731+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_457:218539..226731+ >TCONS_00066637 ID=TCONS_00066637|Name=TCONS_00066637|organism=Clytia hemisphaerica|type=CDS|length=24768bp|location=Sequence derived from alignment at scaffold_457:218539..226731+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00066637 vs. Swiss-Prot (Human)
Match: NRX1A (Neurexin-1 OS=Homo sapiens GN=NRXN1 PE=2 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 3.399e-19 Identity = 92/424 (21.70%), Postives = 177/424 (41.75%), Query Frame = 2
Query: 107 VTYTYPGKGFTKFPILKSSQTTKISFEFQTSSTREEINILYVDDVENGGKSG--------DYLRVTLERGRLNVHWDVSNGNYRDGDTKVIGHNLDDNIKHYVVIESYNGKDFLVRVDG--GDVQSKSFSKAVRFNSEVYLGGCHPDPTKRTLQRDPYFCFQN-GFIGCISNLRWSTERGEPEQIVHPIESDNVAKGCTNR----CLTDPSFSCSNRGRCLNQYIKTGCDCRGTGFTGTTCQKPKQAVTFFGEQYVTWVPQTSMNSLVTDIFVRFKSNQPSGIILFITGQSTSEFMLLELHKGTLILKTKIN--GYDEKVFKIPKSM----NEKASNWRMVSFSRMGASTTISMDDGLY---EYTNSVKRLENKVVQVKFIINKIYFGGVDKLQDGDFALRKSDSKINFIGCLQNIDINQFELI 1306
+T+ P + F P + +T ISF+F+T T IL+ K D+ + + G L + D+ +G + K + ++D ++V + +G+ + V+ + S+ + + E+YLGG + + + N G++GCI +L + + Q+ + V C+ CL++P C N G C + + + CDC GTG+ G +C++ +++ G ++ M++ D+ +RF+S + GI++ T + +++ + LEL G + L ++ + K P+++ N + W V R G S +++DD + RLE ++ I + Y V NFIG LQ++ N I
Sbjct: 482 ITFETP-ESFISLPKWNAKKTGSISFDFRT--TEPNGLILFSHGKPRHQKDAKHPQMIKVDFFAIEMLDGHLYLLLDMGSGTIK---IKALLKKVNDGEWYHVDFQR-DGRSGTISVNTLRTPYTAPGESEILDLDDELYLGGLPENKAGLVFPTEVWTALLNYGYVGCIRDLFIDGQSKDIRQMAEVQSTAGVKPSCSKETAKPCLSNP---CKNNGMCRDGWNRYVCDCSGTGYLGRSCEREATVLSYDGSMFMKIQLPVVMHTEAEDVSLRFRSQRAYGILMATTSRDSADTLRLELDAGRVKLTVNLDCIRINCNSSKGPETLFAGYNLNDNEWHTVRVVRRGKSLKLTVDDQQAMTGQMAGDHTRLEFHNIETGIITERRYLSSVPS---------------NFIGHLQSLTFNGMAYI 880 HSP 2 Score: 88.1965 bits (217), Expect = 1.264e-17 Identity = 80/333 (24.02%), Postives = 150/333 (45.05%), Query Frame = 2
Query: 134 FTKFPILKSSQTTKISFEFQTSSTREEINILYVDDVENGGKSGDYLRVTLERGRLNVHWDVSNG-NYRDGDTKVIGHNLDDNIKHYVVIESYNGKDFLVRVDGG-DVQSKSFSKAVRFNSEVYLGGCHPDPTKRTLQRDPYFCF-QNGFIGCISNLRWSTERGEPEQIVHPIESDN-VAKGCTNRCLTDPSFSCSNRGRCLNQYIKTGCDCRGTGFTGTTCQKPKQAVTFF---GEQYVTWVPQTSMNSLVTDIFVRFKSNQPSGIILFITGQS-TSEFMLLELHKGTLILKTKINGYDEKVFKIPKSMNEKASNWRMVSFSRMGASTTISMD 1108
+ L++ + + F+F+T+S + ILY N G D++ V L +G L+ +D+ NG N G + L+DN H V+I V++D Q + ++ + S++Y+GG K T + P + GF GC++++ + P+ I + + + +GC T SCSN+G CL Q+ CDC T F+G C P F G+ W P ++ + + F + Q +++ + S +++ L +H+G + +K + D + + +N+ + +V F+R G + T+ +D
Sbjct: 915 YVALATLQAYTSMHLFFQFKTTSL--DGLILY-----NSGDGNDFIVVELVKGYLHYVFDLGNGANLIKGSSN---KPLNDNQWHNVMISRDTSNLHTVKIDTKITTQITAGARNLDLKSDLYIGGV----AKETYKSLPKLVHAKEGFQGCLASVDLNGRL--PDLISDALFCNGQIERGCEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKGGGQITYKWPPNDRPSTRADRLAIGFSTVQKEAVLVRVDSSSGLGDYLELHIHQGKIGVKFNVGTDDIAIEESNAIIND--GKYHVVRFTRSGGNATLQVD 1229 The following BLAST results are available for this feature:
BLAST of TCONS_00066637 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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