TCONS_00066764 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066764
Unique NameTCONS_00066764
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3909

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066764 ID=TCONS_00066764|Name=TCONS_00066764|organism=Clytia hemisphaerica|type=transcript|length=3909bp
TTTCAGCTATCGCATTGATAGTGTTTGTAGCCATTCAGCAATGTATTGGT
GTAAAGAATCATCAAACTTTCTTCGGGATATACGGAAAGTTTATCCCAGC
CAATAACCAGGGTAGTGTTAAAGGTTCACAAAGAAACATTTTACCACGTG
TCAATGGCGAAGAGGGAGGGGACGTTAAACTGACCCTCGGCCCCGCCATA
AAGCCCATCAAAACTCGCGATGGACCATTCCAACCAAGTCAACAAGTCAG
TGAGATCATTGGCCAAGTGATGCATTTCGACGAAAATATGTTAAACGGGC
GTGGTCCATCTGTTGCTCGACATCACCCAGCGCCCTCCGCCCATCGAGAG
GCGGAAGAAGATGAAGAGGAACAAACACCGCCCAATGATGAATTGGCGTC
TGAACACGGACCAACTTCACAGGAAGAAACAATAGAAAACGACGATTACA
ACAACGTGGAGAAAGAAGAGTACATCGCGAAAGGGCGTGAAGAAAGCATG
CATTTCTCAAAATTGTTAGACCAATTAGAAGATGATCCTGGACTTGGTAA
TTCACAGACCGGAAACTTAAAACCGACGCATAAGCTTGAACAAGGTCGTC
TGTACAATGGCTTCAAAGCAACGCCTAAATTAAAGCATCCTTTGATTCAC
CGTAAGAAAGGATGTACGGGGAAGAGATGTGATATAGCAGGGGGATTTTT
TGGCGCAACTGATGGACatttcgaaccaccaaatgaaGATGAAGTACCTT
ATGATGTAGGAGACACTCCAATCATTGGCGATGCAGAAGGTCCGGTCCAA
GATGAAGCTATGATGGCTGATACTTTATTTCACCTTCACAAAGTGTATGA
CAAAGAGAAACAGGCCTTAGAATTGCTGGGCCACCATAATGGACATCACT
TTCACCACGGATTTGGAGGTCATTACTACCATGAATTTCCACACCACGAT
GTCCATGACGCGCATGACGAACATCATCACACTCAAATGATCCCCATCGG
TATCGAACTACCTAATCACTTGCATTCTCCACAGAACTTTCGTCACCATG
GTGGTGCTACCACTGTGGCTGGAGGTGCCGCTGGTGGAACTGTAGCAGGC
GGTGCTGCTGGTGGGACAGTAGGAGGTGGAGCAGCTGGAGGAGTTGCCGG
TGGAGGTGCACCCGGAGGAGTTGCTGGTGGAGCCGCTGGAGGAGTTGAAG
GTGGAGCTGCTGGCGGAGTTGAAGGTGGTGCTGCTGGCGGAGTTGAAGGT
GGTGCTGCTGGAGGTATTGAAGGTGGTGCTGCTGGGGGTATTGCTGGAGG
GGCTGTTGGGGGAGCTGCCGGTGGAATTGGAGGTACAGAAGGAGGGGCTG
CGGTTGGAGGTGGCGCAGGAAGTGAAGCTGCAGCTGCTATTGGAGGAGAA
GCTGGAGCGGCTGCAGCTGGAGGAGCAGAGGCCGGCGGAGCAGCAGGCGG
ATCTGTAGGAGCTGAAGAGGGAGCAAAAGAAGGGGCTTCTGAAGGTGCAG
CGACTGGTGCAGCTGAAGGAGCGGCAGCAGGAGCAGCAGGCGGTGCAAGT
ACTGGGGCTGCAGAGGGGGCTGTGGAAAAAGTGGCAGAGGCTATTGCAAG
TGGGGATGGTGATGACCCAGAAAAATTAGTGTCTGCAGCAAAAGAAGGTG
CTTCAAAAGGAGCCGCAGAGGGTGTTGCTACCGGGATATCAGAAGGTGCA
AAACTCGGCGCAGAAGCAGGAGCTGCTGCTGGTGGTTCACAAGGAGGAGC
TGCAGGTGCAGCTGAAGGATCTATCCAAGGAAATGCAGCAGGAGTAACTG
GGGCGATGTCGGGAGGAGCAGAAGGAGGTGCAGCAGTCGGAGGAGCAGCT
GGAGGTGAAGCAGGTGGCCAGGCTGGTGGAGCGATCGGTGCTTCTGCGGG
AGGCGCCGCTGGTGCTGCGGTGGGTGCGGCAGCAGGAGAAGCAGCCGGTG
GTGCAGTTGTTTCAGCTGGAAAGTTATCTGGAAAAGTAGAAGGCTCCGCA
GCAAAGGGAGCAGCTAAGCTAGCAGGTGCAGCTGGTGCTATGCAAGCATC
AGGAGCTGCACAGACTGCTGGTGCTTTGGGTGCAGCTGGAGCCGCTGAAA
GTGCAGGGATAGCAGGTGGTGCAGCTGGTATGGCTGCAGGTGGAGGAGGT
GCTGCAGCagctggtggtggtggtggttcGATTGCAGGAGGAGGAGCTAT
GGCTACTGGCGGTGCTGCTGGAGGTGTTGCTGGAGGTGCAGCTGGTGGCT
CGATGAAAATTGGGGGAGGGATCACAGGAGGTGCAGCAGGAGCATTGAAA
GCTTCAGGAACCGCAGGTGGAGGAGGTAGTATGAAGATTGGAGGTGGTAT
GGCAGGTGCAGCTGGAGGAAGTGCAGGAATATCAGGAGGTGCTGGAGGTT
CACTTAAGATTGGAGGTGGGATGAAAGCGTCAGGAGCTATATCAGGTGGT
ATATCAGGTGGCGGCGGGTTAAGTGTTGGTGGTGGTGGTGCCATGAAAAT
TGGAGGCGGCGGTGGGTTGAAGGTTGGTGGTGGAGGGGCAATGAAGATGG
CCGGAGGAGCGGCTGCTGGGCTGAAAGCGGCAGGTGGCGCAGGGGGTGCT
ATGGCGGCAGGAGGTGGAAGTTCTTCATCGTGGAGTTCAAGCTACGGTTC
AAAGACAGGAGGATATGGACGAACCATTGATGAGGATGAAGACAAGAAAG
AATCGATGAAGAAATTATCGCTGAGTGATGTTTGGTCACGAAAGATCGTT
GCATTGAAAGCGAGAGGAAGCGAAGCTAATTTTGTACCCAAAATTGTCAC
TAGCGGAGGAATCCCTGGCGAAACAGTAAAGATTCGTAAACCAGCAATGA
CCAAGAAGTTTGTACATTTAATGGAGGATCTGGCTGGTAAATTAGCTGTC
AATAACCTGAACGTAGCAGAagaatttgtgaaaaatttgaagaagaagaa
agaagaggAAGTTTATGAATCGATAGGTGTTACCAGATCTCTTAAAAGTA
aatcgaaaatattttcagcaaaaaacgcagtcaaaaaacatttcattaaa
aagttgaCAACgaataacaataacaaacatCATAAGAGAGCCGTTAAAAA
GTCCAAAGTCAACATTGGAAGTGCTCTCTAGAAGTGATTTGCTTCGATTT
TTAGGACAGTTTTTagtattgttttcttttcaattaggTATTTTTTTGTG
ACAATTTCATTCCCTATTTGGTAAATATTGTATAATAAAGAATTAAAcca
ataaatcaaaatttctattTACCGTATCGGCCCTTCAGTCTGGCCGAAAT
ACAATAAAACAGGAGTGAACGTAGAAAAAAATTccgcgtaaactttcttg
gtaccgttggaagcGGAATTTTATGTAGATCCTCATACTCAGGGCCTCAT
GATGAGGCCCTTGGGGAAAACCTTCGGTAAAATCAAGCCTGAAGTGTACT
TCTTTGCCCCGAAATAGATACGTTTTTGAGCAGTGTACTTGTTATCAGCT
ACACTAAAAACCTATCAAAgctattcaaagtctttgaaagtcagcgCTAT
TCCCATGTGCTTTCGCCCTAGGGCTTTCCGCATGCATTTGACCCATTTCA
TATCATGGATGACACTGTTTAATTGATTGTGGTTTCCAGAAATGTTTGTT
GGGAAATCCCCACCGCTAtatttttgagacaggggtatacatTGAGTGTT
TTAAAAGGCACCTACCATTGCAAGGATAGCACTTTTCAAGGCATTTTATA
GCGAAAATGGGTCctttatgttttattttgccaatttttcccCCAAGGGC
CTCAacgtgaggctctgagtatgttaaacttcgtaaaattccgcttccaa
cgataccaagaaagtttacgcggaatttttttcaaggtcaacttttattt
ctgcCAGAC
Run BLAST on NCBI

transcript from alignment at scaffold_46:195550..200161+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066764 ID=TCONS_00066764|Name=TCONS_00066764|organism=Clytia hemisphaerica|type=transcript|length=4612bp|location=Sequence derived from alignment at scaffold_46:195550..200161+ (Clytia hemisphaerica)
TTTCAGCTATCGCATTGATAGTGTTTGTAGCCATTCAGCAATGTATTGGT
GTAAAGAATCATCAAACTTTCTTCGGGATATACGGAAAGTTTATCCCAGC
CAATAACCAGGGTAGTGTTAAAGGTTCACAAAGAAACATTTTACCACGTG
TCAATGGCGAAGAGGGAGGGGACGTTAAACTGACCCTCGGCCCCGCCATA
AAGCCCATCAAAACTCGCGATGGACCATTCCAACCAAGTCAACAAGTCAG
TGAGATCATTGGCCAAGTGATGCATTTCGACGAAAATATGTTAAACGGGC
GTGGTCCATCTGTTGCTCGACATCACCCAGCGCCCTCCGCCCATCGAGAG
GCGGAAGAAGATGAAGAGGAACAAACACCGCCCAATGATGAATTGGCGTC
TGAACACGGACCAACTTCACAGGAAGAAACAATAGAAAACGACGATTACA
ACAACGTGGAGAAAGAAGAGTACATCGCGAAAGGGCGTGAAGAAAGCATG
CATTTCTCAAAATTGTTAGACCAATTAGAAGATGATCCTGGACTTGGTAA
TTCACAGACCGGAAACTTAAAACCGACGCATAAGCTTGAACAAGGTCGTC
TGTACAATGGCTTCAAAGCAACGCCTAAATTAAAGCATCCTTTGATTCAC
CGTAAGAAAGGATGTACGGGGAAGAGATGTGATATAGCAGGGGGATTTTT
TGGCGCAACTGATGGACatttcgaaccaccaaatgaaGATGAAGTACCTT
ATGATGTAGGAGGTAATAGAACCATTATAATTTCGCATTGATTCAATAAT
CAATTAAATACGGTACAAACATAGGCCTTGTATGTTCCTCATACATTTCT
TACAAAACCTTATTACAACAAATCTGCAGACATGGTGTAAGTACTGTGAA
ACGATATTGAAATAATTTCACTGTAAAATTCTTTGCGTGTTTAAAACTTA
AATACATGTTTTCTTTACGAATCTTTTGATTAAAACCACACCATTTCTTT
TATTGCAGACACTCCAATCATTGGCGATGCAGAAGGTCCGGTCCAAGATG
AAGCTATGATGGCTGATACTTTATTTCACCTTCACAAAGTGTATGACAAA
GAGAAACAGGCCTTAGAATTGCTGGGCCACCATAATGGACATCACTTTCA
CCACGGATGTAAGTTTGGACATTTAAAGATAACCATCATCATGGCTCGAC
CAACAAGGCTTCTCAAAACATGAATGAAGTGTTCTAAAAATTATTATGTT
CTTCTTTGTAAAGCAGCTAAATTGAGTCTGGTAGAATTAAATCATATTGT
CAAAGGACAgttcctttttaatttttagtggAAATTAAAAGGTTAAGCGA
TAACGTTAGTTCTCCTTTAACGAATTCATTATTCCATTCTTCTCATTAGT
TGGAGGTCATTACTACCATGAATTTCCACACCACGATGTCCATGACGCGC
ATGACGAACATCATCACACTCAAATGATCCCCATCGGTATCGAACTACCT
AATCACTTGCATTCTCCACAGAACTTTCGTCACCATGGTGGTGCTACCAC
TGTGGCTGGAGGTGCCGCTGGTGGAACTGTAGCAGGCGGTGCTGCTGGTG
GGACAGTAGGAGGTGGAGCAGCTGGAGGAGTTGCCGGTGGAGGTGCACCC
GGAGGAGTTGCTGGTGGAGCCGCTGGAGGAGTTGAAGGTGGCGCTGCTGG
CGGCGCTGCTGGAGGAGTTGAAGGTGGCGCTGCCGGAGGAGCAGCTGGAG
AAGCTACTAGTGGAGCCGCTGGAGGTGCTGAAGGTGGTGCTGCTGGCGGA
GTTGAAGGTGGAGCCGCTGGTGGAGTTGAAGGTGGAGCTGCTGGCGGAGT
TGAAGGTGGTGCTGCTGGCGGAGTTGAAGGTGGTGCTGCTGGAGGTATTG
AAGGTGGTGCTGCTGGGGGTATTGCTGGAGGGGCTGTTGGGGGAGCTGCC
GGTGGAATTGGAGGTACAGAAGGAGGGGCTGCGGTTGGAGGTGGCGCAGG
AAGTGAAGCTGCAGCTGCTATTGGAGGAGAAGCTGGAGCGGCTGCAGCTG
GAGGAGCAGAGGCCGGCGGAGCAGCAGGCGGATCTGTAGGAGCTGAAGAG
GGAGCAAAAGAAGGGGCTTCTGAAGGTGCAGCGACTGGTGCAGCTGAAGG
AGCGGCAGCAGGAGCAGCAGGCGGTGCAAGTACTGGGGCTGCAGAGGGGG
CTGTGGAAAAAGTGGCAGAGGCTATTGCAAGTGGGGATGGTGATGACCCA
GAAAAATTAGTGTCTGCAGCAAAAGAAGGTGCTTCAAAAGGAGCCGCAGA
GGGTGTTGCTACCGGGATATCAGAAGGTGCAAAACTCGGCGCAGAAGCAG
GAGCTGCTGCTGGTGGTTCACAAGGAGGAGCTGCAGGTGCAGCTGAAGGA
TCTATCCAAGGAAATGCAGCAGGAGTAACTGGGGCGATGTCGGGAGGAGC
AGAAGGAGGTGCAGCAGTCGGAGGAGCAGCTGGAGGTGAAGCAGGTGGCC
AGGCTGGTGGAGCGATCGGTGCTTCTGCGGGAGGCGCCGCTGGTGCTGCG
GTGGGTGCGGCAGCAGGAGAAGCAGCCGGTGGTGCAGTTGTTTCAGCTGG
AAAGTTATCTGGAAAAGTAGAAGGCTCCGCAGCAAAGGGAGCAGCTAAGC
TAGCAGGTGCAGCTGGTGCTATGCAAGCATCAGGAGCTGCACAGACTGCT
GGTGCTTTGGGTGCAGCTGGAGCCGCTGAAAGTGCAGGGATAGCAGGTGG
TGCAGCTGGTATGGCTGCAGGTGGAGGAGGTGCTGCAGCagctggtggtg
gtggtggttcGATTGCAGGAGGAGGAGCTATGGCTACTGGCGGTGCTGCT
GGAGGTGTTGCTGGAGGTGCAGCTGGTGGCTCGATGAAAATTGGGGGAGG
GATCACAGGAGGTGCAGCAGGAGCATTGAAAGCTTCAGGAACCGCAGGTG
GAGGAGGTAGTATGAAGATTGGAGGTGGTATGGCAGGTGCAGCTGGAGGA
AGTGCAGGAATATCAGGAGGTGCTGGAGGTTCACTTAAGATTGGAGGTGG
GATGGCAGGTGCAGCTGGAGGAAGTGCAGGAATATCAGGAGGCGCTGGAG
GTTCGCTGAAGATTGGAGGTGGGATGAAAGCGTCAGGAGCTATATCAGGT
GGTATATCAGGTGGCGGCGGGTTAAGTGTTGGTGGTGGTGGTGCCATGAA
AATTGGAGGCGGCGGTGGGTTGAAGGTTGGTGGTGGAGGGGCAATGAAGA
TGGCCGGAGGAGCGGCTGCTGGGCTGAAAGCGGCAGGTGGCGCAGGGGGT
GCTATGGCGGCAGGAGGTGGAAGTTCTTCATCGTGGAGTTCAAGCTACGG
TTCAAAGACAGGAGGATATGGACGAACCATTGATGAGGATGAAGACAAGA
AAGAATCGATGAAGAAATTATCGCTGAGTGATGTTTGGTCACGAAAGATC
GTTGCATTGAAAGCGAGAGGAAGCGAAGCTAATTTTGTACCCAAAATTGT
CACTAGCGGAGGAATCCCTGGCGAAACAGTAAAGATTCGTAAACCAGCAA
TGACCAAGAAGTTTGTACATTTAATGGAGGATCTGGCTGGTAAATTAGCT
GTCAATAACCTGAACGTAGCAGAagaatttgtgaaaaatttgaagaagaa
gaaagaagaggAAGTTTATGAATCGATAGGTGTTACCAGATCTCTTAAAA
GTAaatcgaaaatattttcagcaaaaaacgcagtcaaaaaacatttcatt
aaaaagttgaCAACgaataacaataacaaacatCATAAGAGAGCCGTTAA
AAAGTCCAAAGTCAACATTGGAAGTGCTCTCTAGAAGTGATTTGCTTCGA
TTTTTAGGACAGTTTTTagtattgttttcttttcaattaggTATTTTTTT
GTGACAATTTCATTCCCTATTTGGTAAATATTGTATAATAAAGAATTAAA
ccaataaatcaaaatttctattTACCGTATCGGCCCTTCAGTCTGGCCGA
AATACAATAAAACAGGAGTGAACGTAGAAAAAAATTccgcgtaaactttc
ttggtaccgttggaagcGGAATTTTATGTAGATCCTCATACTCAGGGCCT
CATGATGAGGCCCTTGGGGAAAACCTTCGGTAAAATCAAGCCTGAAGTGT
ACTTCTTTGCCCCGAAATAGATACGTTTTTGAGCAGTGTACTTGTTATCA
GCTACACTAAAAACCTATCAAAgctattcaaagtctttgaaagtcagcgC
TATTCCCATGTGCTTTCGCCCTAGGGCTTTCCGCATGCATTTGACCCATT
TCATATCATGGATGACACTGTTTAATTGATTGTGGTTTCCAGAAATGTTT
GTTGGGAAATCCCCACCGCTAtatttttgagacaggggtatacatTGAGT
GTTTTAAAAGGCACCTACCATTGCAAGGATAGCACTTTTCAAGGCATTTT
ATAGCGAAAATGGGTCctttatgttttattttgccaatttttcccCCAAG
GGCCTCAacgtgaggctctgagtatgttaaacttcgtaaaattccgcttc
caacgataccaagaaagtttacgcggaatttttttcaaggtcaactttta
tttctgcCAGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041750XLOC_041750Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066764-exon-scaffold_46-1491911889:195550..196311TCONS_00066764-exon-scaffold_46-1491911889:195550..196311Clytia hemisphaericaexon
TCONS_00066764-exon-scaffold_46-1510915933:195550..196311TCONS_00066764-exon-scaffold_46-1510915933:195550..196311Clytia hemisphaericaexon
TCONS_00066764-exon-scaffold_46-1575043694:195550..196311TCONS_00066764-exon-scaffold_46-1575043694:195550..196311Clytia hemisphaericaexon
TCONS_00066764-exon-scaffold_46-1491911889:196558..196707TCONS_00066764-exon-scaffold_46-1491911889:196558..196707Clytia hemisphaericaexon
TCONS_00066764-exon-scaffold_46-1510915933:196558..196707TCONS_00066764-exon-scaffold_46-1510915933:196558..196707Clytia hemisphaericaexon
TCONS_00066764-exon-scaffold_46-1575043694:196558..196707TCONS_00066764-exon-scaffold_46-1575043694:196558..196707Clytia hemisphaericaexon
TCONS_00066764-exon-scaffold_46-1491911889:196949..197236TCONS_00066764-exon-scaffold_46-1491911889:196949..197236Clytia hemisphaericaexon
TCONS_00066764-exon-scaffold_46-1510915933:196949..197236TCONS_00066764-exon-scaffold_46-1510915933:196949..197236Clytia hemisphaericaexon
TCONS_00066764-exon-scaffold_46-1575043694:196949..197236TCONS_00066764-exon-scaffold_46-1575043694:196949..197236Clytia hemisphaericaexon
TCONS_00066764-exon-scaffold_46-1491911889:197381..198595TCONS_00066764-exon-scaffold_46-1491911889:197381..198595Clytia hemisphaericaexon
TCONS_00066764-exon-scaffold_46-1510915933:197381..198595TCONS_00066764-exon-scaffold_46-1510915933:197381..198595Clytia hemisphaericaexon
TCONS_00066764-exon-scaffold_46-1575043694:197381..198595TCONS_00066764-exon-scaffold_46-1575043694:197381..198595Clytia hemisphaericaexon
TCONS_00066764-exon-scaffold_46-1491911889:198668..200161TCONS_00066764-exon-scaffold_46-1491911889:198668..200161Clytia hemisphaericaexon
TCONS_00066764-exon-scaffold_46-1510915933:198668..200161TCONS_00066764-exon-scaffold_46-1510915933:198668..200161Clytia hemisphaericaexon
TCONS_00066764-exon-scaffold_46-1575043694:198668..200161TCONS_00066764-exon-scaffold_46-1575043694:198668..200161Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_46supercontigscaffold_46:195550..200161 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.878878	0.524036	0.527453	0.217194	0.955906	0.834904	2.5834	2.74797	2.02348	7.21421	3.37261	2.71412	0	0	1.48405	2.06383	2.16324	1.80709	2.45794	1.86937	0.540851	0.437705	0	0.13967
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066764 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top