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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066776 ID=TCONS_00066776|Name=TCONS_00066776|organism=Clytia hemisphaerica|type=transcript|length=2994bpRun BLAST on NCBI protein sequence of TCONS_00066776-protein >TCONS_00066776-protein ID=TCONS_00066776-protein|Name=TCONS_00066776-protein|organism=Clytia hemisphaerica|type=polypeptide|length=465bp MAEGRLVKVHSQNMSHVEMVGRFFYIMDPHKHMFETPIEVPDYLIEALPFRun BLAST on NCBI transcript from alignment at scaffold_46:40416..49008- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00066776 ID=TCONS_00066776|Name=TCONS_00066776|organism=Clytia hemisphaerica|type=transcript|length=8593bp|location=Sequence derived from alignment at scaffold_46:40416..49008- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_46:40416..49008- >TCONS_00066776 ID=TCONS_00066776|Name=TCONS_00066776|organism=Clytia hemisphaerica|type=CDS|length=20970bp|location=Sequence derived from alignment at scaffold_46:40416..49008- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00066776 vs. Swiss-Prot (Human)
Match: ALKMO (Alkylglycerol monooxygenase OS=Homo sapiens GN=AGMO PE=1 SV=1) HSP 1 Score: 337.035 bits (863), Expect = 1.556e-104 Identity = 174/399 (43.61%), Postives = 239/399 (59.90%), Query Frame = 1
Query: 394 QNMSHVEMVGRFFYIMDPHKHMFETPIEVPDYLIEALPFFVAAVFLEMFIAFLQDGYN-HKLFYVFNNISAAMFQVTINKLVVQPLGYVLYCYVHQHYRLTTLPWDSVWTWLFAFVAIDFAYYWFHRMAHEVNLLWCAHQMHHSSEDYNLTTAFRQSIAQKYFKLV-YIPIALILPPSIYLVHAQFNLLYQVWIHTEVVPKLGPLEYIFNTASHHRVHHGRNIYCIDTNYGGTLIIWDRILGTFAEEEEKVSYGLVYPEYTANPLLLQGGHFYYLYRRFCKLEKWSDKLNCLFRKPCWMAESEKVGLTPEQMEIPEVESPVQLRVLEHFKMEDRLETYYVLFHFLISTFVFVTFFGNYMSLSVITAYGCMCYLFLTLTSCGFILEGRWFWCHVEVIRCL 1584
Q++S + FY M P + F+T EVPDY+ +A PFF++ + LE+ ++++ G +L +ISA + + L + + Y Y+ ++YRL LPWDS WTW AF+ +DF YYWFHRMAHEVN++W HQ HHSSEDYNL+TA RQS+ Q Y + Y P+AL +PPS+Y VH QFNLLYQ WIHTEV+ LGPLE I NT SHHRVHHGRN YCID NY G LIIWD+I GTF E EKV YGL +P T P+ +Q H + ++ F + +K + +F+ P W ++GL+ E E+ E P +L Y + F + + F + +LS +T +C++ LTLTS GF+L+ R +E +RCL
Sbjct: 8 QDVSVSQGFRMLFYTMKPSETSFQTLEEVPDYVKKATPFFISLMLLELVVSWILKGKPPGRLDDALTSISAGVLS-RLPSLFFRSIELTSYIYIWENYRLFNLPWDSPWTWYSAFLGVDFGYYWFHRMAHEVNIMWAGHQTHHSSEDYNLSTALRQSVLQIYTSWIFYSPLALFIPPSVYAVHLQFNLLYQFWIHTEVINNLGPLELILNTPSHHRVHHGRNRYCIDKNYAGVLIIWDKIFGTFEAENEKVVYGLTHPINTFEPIKVQFHHLFSIWTTFWATPGFFNKFSVIFKGPGWGPGKPRLGLSEEIPEVTGKEVPFS-------SSSSQLLKIYTVVQFALMLAFYEETFADTAALSQVTLLLRVCFIILTLTSIGFLLDQRPKAAIMETLRCL 398 The following BLAST results are available for this feature:
BLAST of TCONS_00066776 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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