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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066826 ID=TCONS_00066826|Name=TCONS_00066826|organism=Clytia hemisphaerica|type=transcript|length=1365bp
caacccattaatcaattttttgagcttcagtaggaaaaaaagaagaagta
tTTTTGATTGCAGCGAAAGGTAAAGACATTCATCGTTCAAAATGGATCTG
AGAATACTAGTAGTCATTTCCTttctcaaaacaacaattttggCATTAAT
GGCCAACACAGGTCAACTAGAACTGAAAGGAGAAAAACTTCGATATATTG
GTAGAGAACTGGTAGATTCGAAGAACGTAAGCTCTGAGATGGAGTGTCAT
TTATTTTGTTTGGCACATAAATCCCATTGCAAGTCCATGAACGTGGAAGA
AATAGCTGTGGGTACGCCATATCTATACCAATGTCAGTCATTCAATATCA
GAAAAAATCCAGAGAATCTCCCTATCGATTTCGAAGAATCAGAGAGAAGC
AATTATTACACGTTAATAAGAGAATCAATCACAGAAAGGAGTTGTCAAGA
TTGGAAGAACAAAGGCTTTGATAAAGATGATTTTTATGTGGTAACATATT
CTGATGAAAAGCAAACGAAAGTCTTTTGTGAGATGAAAAGAGAAGACGGC
CCGTGGTTGCTTATACAAAGACGAACAAGCTCCAGAGATTTTTACAAAAC
ATGGGAAAACTTCAAAGGTGGTTTTGGTAAAGGTAAGCACCAGAAAGATA
AACCTTTTTGGCTGGGTAATCATCTGATATATGAGCTGACCAAAAGCAAA
TCGCAAGGAGTCGATCTATTGATTGAAGCAGTAGACAGTGATGGAAAGAT
CGCGACCGGGAGATACGCCCATTTTTCGATCAAACAAGAAACTGAATATT
TTCGATTGAGTTCAGATTTGATTCACGTATCTGGCTTTTCGGGATTTGAA
ACATTGGCGGGTTTCTCATTCGCTACTAAAGATAGGAGTTCACTGTCCGC
CCAAACATGCGTCAATAGCGCACAAACAGCCTGGTGGTTTGGTAATGATT
GTAATGTTGAGATTGATTTGAATCAAAGGAATTCGTTCGTGTGGAATGCT
TTAACAGCTAACAATTCAAATGTTGATATCGTCAAAACCACGATGATGAT
CAAAGTGTGAAGATGTCCCTTCTATTTAAATCACTAAATAACAGTAACAA
GCGAATGATAACATTGCTGCACTAAAATTTGGGTACGCTTCGACAGAATG
CCAAAAAATGGACTTTAATACTCACAATTTCTGCTTACAAGGCTTGTTTT
TGGAACGGAAACTATGGTAAAAACCGGATTGACTTCCGTACAACCAGGGC
AAAGTAACAATAATATAAATAGATTCCGTAACTCGAATACTCGCCGGGGA
GGGCTAAGATTGGCCCGAACTAGGAGTACTtgaagggaccagaaaacttg
ACCGAGTTGAGTAGA Run BLAST on NCBI protein sequence of TCONS_00066826-protein >TCONS_00066826-protein ID=TCONS_00066826-protein|Name=TCONS_00066826-protein|organism=Clytia hemisphaerica|type=polypeptide|length=322bp
MDLRILVVISFLKTTILALMANTGQLELKGEKLRYIGRELVDSKNVSSEM
ECHLFCLAHKSHCKSMNVEEIAVGTPYLYQCQSFNIRKNPENLPIDFEES
ERSNYYTLIRESITERSCQDWKNKGFDKDDFYVVTYSDEKQTKVFCEMKR
EDGPWLLIQRRTSSRDFYKTWENFKGGFGKGKHQKDKPFWLGNHLIYELT
KSKSQGVDLLIEAVDSDGKIATGRYAHFSIKQETEYFRLSSDLIHVSGFS
GFETLAGFSFATKDRSSLSAQTCVNSAQTAWWFGNDCNVEIDLNQRNSFV
WNALTANNSNVDIVKTTMMIKV Run BLAST on NCBI transcript from alignment at scaffold_46:352568..353932 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066826 ID=TCONS_00066826|Name=TCONS_00066826|organism=Clytia hemisphaerica|type=transcript|length=1365bp|location=Sequence derived from alignment at scaffold_46:352568..353932 (Clytia hemisphaerica)
TCTACTCAACTCGGTcaagttttctggtcccttcaAGTACTCCTAGTTCG
GGCCAATCTTAGCCCTCCCCGGCGAGTATTCGAGTTACGGAATCTATTTA
TATTATTGTTACTTTGCCCTGGTTGTACGGAAGTCAATCCGGTTTTTACC
ATAGTTTCCGTTCCAAAAACAAGCCTTGTAAGCAGAAATTGTGAGTATTA
AAGTCCATTTTTTGGCATTCTGTCGAAGCGTACCCAAATTTTAGTGCAGC
AATGTTATCATTCGCTTGTTACTGTTATTTAGTGATTTAAATAGAAGGGA
CATCTTCACACTTTGATCATCATCGTGGTTTTGACGATATCAACATTTGA
ATTGTTAGCTGTTAAAGCATTCCACACGAACGAATTCCTTTGATTCAAAT
CAATCTCAACATTACAATCATTACCAAACCACCAGGCTGTTTGTGCGCTA
TTGACGCATGTTTGGGCGGACAGTGAACTCCTATCTTTAGTAGCGAATGA
GAAACCCGCCAATGTTTCAAATCCCGAAAAGCCAGATACGTGAATCAAAT
CTGAACTCAATCGAAAATATTCAGTTTCTTGTTTGATCGAAAAATGGGCG
TATCTCCCGGTCGCGATCTTTCCATCACTGTCTACTGCTTCAATCAATAG
ATCGACTCCTTGCGATTTGCTTTTGGTCAGCTCATATATCAGATGATTAC
CCAGCCAAAAAGGTTTATCTTTCTGGTGCTTACCTTTACCAAAACCACCT
TTGAAGTTTTCCCATGTTTTGTAAAAATCTCTGGAGCTTGTTCGTCTTTG
TATAAGCAACCACGGGCCGTCTTCTCTTTTCATCTCACAAAAGACTTTCG
TTTGCTTTTCATCAGAATATGTTACCACATAAAAATCATCTTTATCAAAG
CCTTTGTTCTTCCAATCTTGACAACTCCTTTCTGTGATTGATTCTCTTAT
TAACGTGTAATAATTGCTTCTCTCTGATTCTTCGAAATCGATAGGGAGAT
TCTCTGGATTTTTTCTGATATTGAATGACTGACATTGGTATAGATATGGC
GTACCCACAGCTATTTCTTCCACGTTCATGGACTTGCAATGGGATTTATG
TGCCAAACAAAATAAATGACACTCCATCTCAGAGCTTACGTTCTTCGAAT
CTACCAGTTCTCTACCAATATATCGAAGTTTTTCTCCTTTCAGTTCTAGT
TGACCTGTGTTGGCCATTAATGccaaaattgttgttttgagaaAGGAAAT
GACTACTAGTATTCTCAGATCCATTTTGAACGATGAATGTCTTTACCTTT
CGCTGCAATCAAAAatacttcttctttttttcctactgaagctcaaaaaa
ttgattaatgggttg Coding sequence (CDS) from alignment at scaffold_46:352568..353932 >TCONS_00066826 ID=TCONS_00066826|Name=TCONS_00066826|organism=Clytia hemisphaerica|type=CDS|length=969bp|location=Sequence derived from alignment at scaffold_46:352568..353932 (Clytia hemisphaerica)
TCACACTTTGATCATCATCGTGGTTTTGACGATATCAACATTTGAATTGT
TAGCTGTTAAAGCATTCCACACGAACGAATTCCTTTGATTCAAATCAATC
TCAACATTACAATCATTACCAAACCACCAGGCTGTTTGTGCGCTATTGAC
GCATGTTTGGGCGGACAGTGAACTCCTATCTTTAGTAGCGAATGAGAAAC
CCGCCAATGTTTCAAATCCCGAAAAGCCAGATACGTGAATCAAATCTGAA
CTCAATCGAAAATATTCAGTTTCTTGTTTGATCGAAAAATGGGCGTATCT
CCCGGTCGCGATCTTTCCATCACTGTCTACTGCTTCAATCAATAGATCGA
CTCCTTGCGATTTGCTTTTGGTCAGCTCATATATCAGATGATTACCCAGC
CAAAAAGGTTTATCTTTCTGGTGCTTACCTTTACCAAAACCACCTTTGAA
GTTTTCCCATGTTTTGTAAAAATCTCTGGAGCTTGTTCGTCTTTGTATAA
GCAACCACGGGCCGTCTTCTCTTTTCATCTCACAAAAGACTTTCGTTTGC
TTTTCATCAGAATATGTTACCACATAAAAATCATCTTTATCAAAGCCTTT
GTTCTTCCAATCTTGACAACTCCTTTCTGTGATTGATTCTCTTATTAACG
TGTAATAATTGCTTCTCTCTGATTCTTCGAAATCGATAGGGAGATTCTCT
GGATTTTTTCTGATATTGAATGACTGACATTGGTATAGATATGGCGTACC
CACAGCTATTTCTTCCACGTTCATGGACTTGCAATGGGATTTATGTGCCA
AACAAAATAAATGACACTCCATCTCAGAGCTTACGTTCTTCGAATCTACC
AGTTCTCTACCAATATATCGAAGTTTTTCTCCTTTCAGTTCTAGTTGACC
TGTGTTGGCCATTAATGccaaaattgttgttttgagaaAGGAAATGACTA
CTAGTATTCTCAGATCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066826-exon-scaffold_46-1491911889:352568..353932 | TCONS_00066826-exon-scaffold_46-1491911889:352568..353932 | Clytia hemisphaerica | exon |
| TCONS_00066826-exon-scaffold_46-1510915933:352568..353932 | TCONS_00066826-exon-scaffold_46-1510915933:352568..353932 | Clytia hemisphaerica | exon |
| TCONS_00066826-exon-scaffold_46-1575043694:352568..353932 | TCONS_00066826-exon-scaffold_46-1575043694:352568..353932 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_46 | supercontig | scaffold_46:352568..353932 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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