TCONS_00066854 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066854
Unique NameTCONS_00066854
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length683

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066854 ID=TCONS_00066854|Name=TCONS_00066854|organism=Clytia hemisphaerica|type=transcript|length=683bp
ATTGAACCTTTATGAAGACGACAACGGCATCTTACGGTTAAAAGGACGTT
ATGGCACATCTCTACCTTACGATCAATCGCATCCAGCAATCATCAGGAGA
GACGGACACCTCAGTCAACTCATTGTGGAAGATGCACATGAACGGACGTT
ACATCACGGAGTTGAAACAACATTGGCATTCGTGAGACAAAGATATTGGC
TaacaaaaggaagaaaacgtgtAAAAGACATCCTTCGAAAATGTACGATA
TGTAAGAGGTTCAACCAAAGAACATTTTTACCTCCACCTACAGCAGATAT
TCCGTCTTATAGACTTGAAAGTGATTTTGCTTTTCAACACACTGGTTTGG
ATTTTTGTGGACCTTTATACGTCAAAGAAAAATGTTGTGAGAACTCTTTT
ACTAAGGTCTATATTTTGCTACTGACTTGCGCGACTAGTAGGGCGTTGCA
TTTAGAATTAGTGCCTGACATGGGTGATGAGTCTTTTATTCGTGGAATCA
TTCGTTTTTTCGCCCGGAAGGGTTATCCTGAACTGGTAATTCATGATAAT
GCAAAAACGTTCAAATCACGCGAAGTGAAGCACTTTTTCTTGAAACAGGG
CATCAAACAAGAATTTATATTGGCTTTAGCCCCTTGGTGGGGTGGTTTTT
ATGAACGCTTAGTAAGAAACGTGAAATCATCAN
Run BLAST on NCBI

protein sequence of TCONS_00066854-protein

>TCONS_00066854-protein ID=TCONS_00066854-protein|Name=TCONS_00066854-protein|organism=Clytia hemisphaerica|type=polypeptide|length=227bp
LNLYEDDNGILRLKGRYGTSLPYDQSHPAIIRRDGHLSQLIVEDAHERTL
HHGVETTLAFVRQRYWLTKGRKRVKDILRKCTICKRFNQRTFLPPPTADI
PSYRLESDFAFQHTGLDFCGPLYVKEKCCENSFTKVYILLLTCATSRALH
LELVPDMGDESFIRGIIRFFARKGYPELVIHDNAKTFKSREVKHFFLKQG
IKQEFILALAPWWGGFYERLVRNVKSS
Run BLAST on NCBI

transcript from alignment at scaffold_461:45967..46649

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066854 ID=TCONS_00066854|Name=TCONS_00066854|organism=Clytia hemisphaerica|type=transcript|length=683bp|location=Sequence derived from alignment at scaffold_461:45967..46649 (Clytia hemisphaerica)
NTGATGATTTCACGTTTCTTACTAAGCGTTCATAAAAACCACCCCACCAA
GGGGCTAAAGCCAATATAAATTCTTGTTTGATGCCCTGTTTCAAGAAAAA
GTGCTTCACTTCGCGTGATTTGAACGTTTTTGCATTATCATGAATTACCA
GTTCAGGATAACCCTTCCGGGCGAAAAAACGAATGATTCCACGAATAAAA
GACTCATCACCCATGTCAGGCACTAATTCTAAATGCAACGCCCTACTAGT
CGCGCAAGTCAGTAGCAAAATATAGACCTTAGTAAAAGAGTTCTCACAAC
ATTTTTCTTTGACGTATAAAGGTCCACAAAAATCCAAACCAGTGTGTTGA
AAAGCAAAATCACTTTCAAGTCTATAAGACGGAATATCTGCTGTAGGTGG
AGGTAAAAATGTTCTTTGGTTGAACCTCTTACATATCGTACATTTTCGAA
GGATGTCTTTTacacgttttcttccttttgttAGCCAATATCTTTGTCTC
ACGAATGCCAATGTTGTTTCAACTCCGTGATGTAACGTCCGTTCATGTGC
ATCTTCCACAATGAGTTGACTGAGGTGTCCGTCTCTCCTGATGATTGCTG
GATGCGATTGATCGTAAGGTAGAGATGTGCCATAACGTCCTTTTAACCGT
AAGATGCCGTTGTCGTCTTCATAAAGGTTCAAT

Coding sequence (CDS) from alignment at scaffold_461:45967..46649

>TCONS_00066854 ID=TCONS_00066854|Name=TCONS_00066854|organism=Clytia hemisphaerica|type=CDS|length=681bp|location=Sequence derived from alignment at scaffold_461:45967..46649 (Clytia hemisphaerica)
TGATGATTTCACGTTTCTTACTAAGCGTTCATAAAAACCACCCCACCAAG
GGGCTAAAGCCAATATAAATTCTTGTTTGATGCCCTGTTTCAAGAAAAAG
TGCTTCACTTCGCGTGATTTGAACGTTTTTGCATTATCATGAATTACCAG
TTCAGGATAACCCTTCCGGGCGAAAAAACGAATGATTCCACGAATAAAAG
ACTCATCACCCATGTCAGGCACTAATTCTAAATGCAACGCCCTACTAGTC
GCGCAAGTCAGTAGCAAAATATAGACCTTAGTAAAAGAGTTCTCACAACA
TTTTTCTTTGACGTATAAAGGTCCACAAAAATCCAAACCAGTGTGTTGAA
AAGCAAAATCACTTTCAAGTCTATAAGACGGAATATCTGCTGTAGGTGGA
GGTAAAAATGTTCTTTGGTTGAACCTCTTACATATCGTACATTTTCGAAG
GATGTCTTTTacacgttttcttccttttgttAGCCAATATCTTTGTCTCA
CGAATGCCAATGTTGTTTCAACTCCGTGATGTAACGTCCGTTCATGTGCA
TCTTCCACAATGAGTTGACTGAGGTGTCCGTCTCTCCTGATGATTGCTGG
ATGCGATTGATCGTAAGGTAGAGATGTGCCATAACGTCCTTTTAACCGTA
AGATGCCGTTGTCGTCTTCATAAAGGTTCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041812XLOC_041812Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066854-proteinTCONS_00066854-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066854-exon-scaffold_461-1491911889:45967..46649TCONS_00066854-exon-scaffold_461-1491911889:45967..46649Clytia hemisphaericaexon
TCONS_00066854-exon-scaffold_461-1510915933:45967..46649TCONS_00066854-exon-scaffold_461-1510915933:45967..46649Clytia hemisphaericaexon
TCONS_00066854-exon-scaffold_461-1575043694:45967..46649TCONS_00066854-exon-scaffold_461-1575043694:45967..46649Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_461supercontigscaffold_461:45967..46649 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.145976	0	0	88.1172	64.3672	7.02467	9.27904	0.630726	1.87501	1.06163	0.598177	0.547566	0.413566	0	0	0.168563	0.115181	0	0.0832586	0	0	0.0858187	0.0780217	0.562524	0.788918	0	0	0.083075	0.0846402
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001584Integrase_cat-core
IPR012337RNaseH-like_dom
Vocabulary: Biological Process
TermDefinition
GO:0015074DNA integration
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066854 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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