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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066861 ID=TCONS_00066861|Name=TCONS_00066861|organism=Clytia hemisphaerica|type=transcript|length=1044bp
ATTTATCCTTGTCTATTGTTAGACATAAcatcaataataaaaaaaacgat
tttttaatGGGAGTGATCGAGCTTGTGTAAAAGATACACGAATTAATTCG
CTGTCTTATATTATACGTTTATGTTGTTTTAGAAGTGTGTTTTGTGTGAT
TGAATTTTGGAATTCTTTTGCTTTGATCAGAAGGGTTGTGACATTTGAGG
GCGACGCACAGAAGttacattttgattttcttggacTTTCtatttcacca
attttcatACACAATGAGTTACGAAGACATGGAAGAATACCGTGATACCT
TCTCACTTTTCGACAAACAAGGAGATGGAAAAATTGAATGTGGCGATATT
GGAGATATCTTACGCGCTCTCGGATGCAACCCAACTCAAGCCGAAGTCAA
AAAAATCGTCGCCGACATCGACTCCTCAGGACAAAAGCGAATCACCTTTG
AAGAATTTATTCCAATCTTTCACACGATGAGCAAAAAGAAAAGCTCGTGT
GGTTTCGAAGCCTTCTCCGAAGGATTCAGGATTTTTGACAGAGACAACAA
CGGTATGGTCAGTGTGGCCGAAGTCAGACATTTATTGACCAGTTTAGgtg
aaaaattaaattccagTGATGTCGATGCTTTAGTACAAGGACTTGAAGAT
TCAAGTGGCATGATCAACTACGAAGAATTTGTTCGTGGAGTAATGAACGC
TTAAACACactacaaacaaacaaacatcaGAACTGCgtccaaaaacaaaa
acaacacaaCATCACGCAATCACCATAACAACTGATGATACGtcatcaat
ttcaaaatttagggTTCTTTTTGCGAAAAAAGCAAGAAAGTTGGGATgag
ttttaaatttcaaatttaataattctatattattttttaaaacgaaatct
tacaatatttttgtttgaaatttttgtaccATATTAAACTTGGGGaggaa
ctttctatttttgtaaaataatatttttcttaattatactatattatatt
ttccaaagaaaaacaaaaacatttagtACTCTTGTCGTTctata Run BLAST on NCBI transcript from alignment at scaffold_462:62614..69846+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066861 ID=TCONS_00066861|Name=TCONS_00066861|organism=Clytia hemisphaerica|type=transcript|length=7233bp|location=Sequence derived from alignment at scaffold_462:62614..69846+ (Clytia hemisphaerica)
ATTTATCCTTGTCTATTGTTAGACATAAcatcaataataaaaaaaacgat
tttttaatGGGAGTGATCGAGCTTGTGTAAAAGATACACGAATTAATTCG
CTGTCTTATATTATACGTTTATGTTGTTTTAGAAGTGTGTTTTGTGTGAT
TGAATTTTGGAATTCTTTTGCTTTGATCAGAAGGGTTGTGACATTTGAGG
GCGACGCACAGAAGttacattttgattttcttggacTTTCtatttcacca
attttcatACACAATGAGTTACGAAGACATGGAAGgtcagccattttgaa
ttttcatttttttctaaagtttatgATATTATGAGATAACTCTGCGTGAT
GATTTTATTAACTCACAGCAGTTTAATAATATTATTATTCCTGTTTAGAG
TTTATGCTTTCCACTCGTGAGAAATTGTTAGATTTTTATTATGTTACCGA
AGATAGTCTTTGGTTAAAGGGTGGGATTGCTTTGTCCTTAATTTCCTTTC
CTAAATAGACCAATCAATAATGTTTGTACAATCATTTGAAGGTGTTGATC
ATTTACCTaaatcatttgatttgaaaacctTGACTCGAccctcttctctt
tatgtcgaCAAGTTGGATTAGATCATCGTGGCATTTTATCATTTGAGAGA
CTTATAGTTTATTAGCAGACAATTAGAATTAAAATGGTAATTTTTATCTA
TAAAATGCTTTCTGATGTTGGATAATAAGAGCTGCTTTGTCTGTTCTATG
ACTTCTATCGTTGTGTTAAAATAGATCTTATTTTGTGAGCGATTTAAATC
TTTTAGTGAGAAGTCTTGTTCCGCCTTTTCTCGACATATCTCTGATTTTT
CTCCTCACTAGAACATGGATTTTATTTCAACCCTCACTTTTTCTGATTCT
CACTCAAGTCCGTAAGGCATTTTTTTGTTATCTTTCGGTTGTAGTCTAGC
AATGTTAACGATGTGACAACTACAAGAGAAAGAAATTTGATCTTTGTGTC
AAAAACTTCTTACACGCTTTTCACGGTTTTCCTCCATTTTTTAACGCAGT
TCAACATTTGATAGATTGGAAATAATggtcaaaagaaattttaaaacatc
GCTGTCTCACCACCCATGTCTAAATcatttttgagacaggggtgaagtTA
AGCAAGATTTCTAAGTATTGACTAAATGACATTGTGCAAAAGTTTAGCTA
TCCTTATTTCTGGTGCCAAACTTTCTAGGCAATCCATATAAAAACTGcag
tatattatttttttgcattttcaaacAAACTATAGTTTATTAATTTGCCA
TAATTGAGGTTTACTTGACACAGGGGTGACTCGTGGAGTTGAATTTCATG
ACCAACAAAGGAACTTTCATTGAAATAATACAcgttttaataagaacaaa
ctatataagaacataaggcttcgatggccaaaatgttaagaaccatgttt
gaaacacttttttttttaagaaaaatgggcaaatatacttacaaaatggt
taaaataagaTCATGTTAGGaacttttttaggcttaaaacccaaggcttc
aaaaattttggatgttcttataaaaaagaacgtGTACATTTTTATCGAAG
TTTCTTTGACCAATCTAGCAGATATTGAACTGTATTAAAAATGTTGGAGA
ACCTTTAAAATATTCTTCCTTTTCCCTTTTGAAATCTTCAGGCAGAAGAA
AGCGAAGATCAAATGTGGGGTAAGATTTCTTGTAAATATTTGTGAAGTAT
GATTGGTCTAATGTAGGGAAGGAAATTGGGATAAATAGGATGGCAATTTT
AAGCCCTGTTTTTAATAGTAGTTACAGTAATGGATTATCTTTCCAAAGTC
GAATAACTTATTTTATCAGTGGTAAAATAACACCCCCTAATTTTAATCAT
AATAATATTTATTACttacaatttttataaattaaaaCATGTTCATGGCC
CTTGTAGATTTATACTTGTTCAATTTTTTGTACACCGTCGAAATATTTAT
CTGCTTAAAGAATCTATGAAATGGTTTTATTGGTTAACACGTTGGTAACT
TTTTATGTAAGCCCtttgaataataaaatttacgtgctttttttgtgaat
tatTTTGTTACGTGTATGTTATCTCACAAACCATTTTAATTTAACACTAA
ATCGATTTATGCAAAAATTATAGTAATTTTATTGCaccaattcaaaaaat
tcatgatagcTTGACCTCACTTAAAATCAACGAGCCATTAGTCGGTCACT
cctctttttgaaaaacaacctttccattgCAAAGATTCGCAGAACTTTTA
AATCCTTTGAATGTTTAACGAAGATAATTTTCATCGAGTGTCCTAAACAC
ATGGTCTGCTAAATACATTTTGAAtgcgcaaaaaaaaacttttttatcat
CAAAGTATTTTATGCAAGCCTCCTAACATTCAAAACATTGTCACTCCCCT
TTCTTAattttacaaatattatttCCGCCATCTTTAATATCTCGTCATTA
GGAAATCATTAACAGATCCTTTAATTTCCATAATTAACAAGAGAAGAGCA
TAACATTTTTCATGAATGATAATAATGACCAGAAAGCTCGGAAAGCTTAC
CTCCTTAATGTAGTATATGAAAAAACTTCCGCTgctttttgaaatgaaaa
agctTTTTCATTCCTCACCCTAGCATGAGAACTTGAGCCTactccattga
gtttaaagggTTAAAAGGATTCTTCAAGGATTCTTTGGTAACCCAGTGAT
AGGTTTtatttcaatctggcgtttgtgtgaaagAGCTTTCTCACCTGGGA
CGGGTTTCGACCAATATTTCTCCAGATGAAATCTCAACGGGTCTCTTTTA
CAGGGGTGTTAAAGgtgagtgatatcgtttgcttactcatcaattttaat
tcacaagctttttcacattggattgacacagatattgagcaagattggtc
agaaagaagaaaagaaaaacatattttgcttatatcagcataatataaca
atagcaagacactgtccagatatgaaatatgtgtctggtatgaaacggga
acacttatgtaaaaataaaacctttaaataactGAATACAAAGACATCGA
AAAACCTATCAaaccattttgtttttatttccatTTTAGAATACCGTGAT
ACCTTCTCACTTTTCGACAAACAAGGAGATGGAAAAATTGAATGTGGCGA
TATTGGAGATATCTTACGCGCTCTCGGATGCAACCCAACTCAAGCCGAAG
TCAAAAAAATCGTCGCCGACATCGACTCCTCAGGTATCTTGAATTCGACA
TTTTAGCGGTAATTTTTAAGTATAGACCTATAACCTTATCTTCATAATTT
GGGATTGTATTTAAGTTTAACAGGACCagatgatacacgtttttttataa
gaatatacatTATAAGAATATCACAATCATGGAATTCGGCAacagaacct
aagaatgccatttttagagcatttgtcaattatccccaagtaactttcac
aaaaaatgccatttgtATTGTGTGTGCGTTAATATTTGTGGTCAGTATTT
TAACGTCATTACCCTCAGATTCAAAATCATAATTTAAGTTatttaataaa
ttttgattttatgaaaataaaatgaagtcaCTTCTGTGTTTACAATTTTT
GCAGAAATCATTCAGGGAGGATCAACGATAATTTAAGTTAAAAACTATTA
TTTGGTGTGTATTGCATGTTGTATTGCATGAGTCAACCAAAACGTTCTTG
CATTTGTGCTATTTGGATCAAGAATGACTTGTGATGCGAATGCTGCTAAG
AAATAATCCAAGCAATTGTAAAGCCAAATCttttaatcaataaaaagatt
aaaataCCATAGGGATTGATTGGAGGTCAAATATTTGATGGCTACCCCGG
TAAATAGAATGCGTAGTTACACAGTTTTTGTTTAGTCGTAGCCTAAAGGG
AACAACTATAACGATAGTGACTTAACTATGGACAAAACCTTACGACCTTA
CACATTATagtgacacccctgtctcgttgACATTGTGAGAATCGTTTAGT
TACTGGGGATGAATAAGCTAAATTCCAAACGAGTAGAATCTCTCACATTT
GATTCAAATACCAACTGTTTACCTTCACTCGTGATAGCTTAAAATCCAAG
TGGGATGCAATAcccttgaatttttttcctaaTAAGAATTCAATCAAATC
AACACTCAGGGCTCACTTACAATGAGTTTAGGCAGGGTGGTCAAAATATC
ACATATCGATGATCTATCGTTTTCCTCATAGGACAAAAGCGAATCACCTT
TGAAGAATTTATTCCAATCTTTCACACGATGAGCAAAAAGAAAAGCTCGT
GTGGTTTCGAAGCCTTCTCCGAAGGATTCAGGATTTTTGACAGAGACAAC
AACGGTATGGTCAGTGTGGCCGAAGTCAGACATTTATTGACCAGTTTAGG
TAAGTCGTCTCCTGCCCAGGCTCCTAAAATACCTTATTTGCTTTTCATAA
TAACTCACATTAGTTATAaacacttttttgcaaagtaaagATTTTattgc
gcctccttagactctatattcGTTGTCCCCCCAATTTCATGGCGTGACCC
TGTATTAGTTATAAATACACTTACAGATCAAGTTCTAGGGTGTTGTGGCT
GCTTCAGATGCTGTTTTAAATCAATAGCTGCTGCCTAAGTTTGGAAAATT
CAAATTCTGATGGTTTTCCTGTTTAAAAAGTGAATATGATTCTATCTGCA
AATTATAGACAAAGTAATTACTTTTGGAGTATCTACACTTCATTAATTGT
atcttttgattattttttcaggtgaaaaattaaattccagTGATGTCGAT
GCTTTAGTACAAGGACTTGAAGATTCAAGTGGCATGATCAACTACGAAGG
TTTGTACCCATACTCACAATTCAAAATTCATGCATGTTTCTTGGGGGAAA
GTCATGATGCTTGCTATATGAATCTATACTGATATCTTCCTCTTTAAGGC
CTTAGGGATGGAcgtaaaatctttatttttgaaaggtATTAAAAGGACAA
ATACTTTCCATAGAGAGTATTTTTAGGTATCCCTACAAAGGTCATGTCAC
gctcttgaaaaaatttccgcCAAAACTTGGTTGAGTTCTCAACGCAAGAA
ATTCTACTATGAAGTTTGATAAGGTTATCCCTTTAAAATGGCTTAAGATG
GGGATCAAAATTAATTTGCTTTATTCACAGATAGTCTAAACATTACTATT
CAAAAGAAAGATCTTATATCAAAATATTGATTCTAATAACAGATTTGACT
ATGCTAACTATGACAGtggtcaaaacttttgaaatcacaCAGTCAAAAAG
CTCTTAGTCAACAGAGAGGCGTTCAAGTTAAATTTTGTTAGGACCAATCT
TTCGCCGGTGGAAAAATCGACATTTAATTCAATGAATTCGTAGCTAATTT
AAATACACATCAAATACCACCTACCATATAAAGCCAAGGAGATCCCAGCC
AAATTGGAAAGTTCGTCCCCAATGATCAGATACTCTATTATTTTATTACC
CGGTGGATAAGTGGTTTCAACCCCATTGTGAAGGGGGCGGTAAAGTTATA
AAGTTGAATCCCGCCCGTCTTCAATTACTCCAATAGAAACTTAAAACCCC
TTCAAACAAATTGGGATTTCTAATTATACTGATATGTGGCTCATGGGCTT
GAAAAACTCTCGCCAGGACACCGAGACAGGATTGTAGAGAAagaaagtta
gatttttttctctcaatatTTCAAGtctgaaaattagatttttcaagaGA
CGGCAATTAGATGTGACTTAGTTGATAATAGGGTCTGCATTTTTCTCTTT
CAGAATTTGTTCGTGGAGTAATGAACGCTTAAACACactacaaacaaaca
aacatcaGAACTGCgtccaaaaacaaaaacaacacaaCATCACGCAATCA
CCATAACAACTGATGATACGtcatcaatttcaaaatttagggTTCTTTTT
GCGAAAAAAGCAAGAAAGTTGGGATgagttttaaatttcaaatttaataa
ttctatattattttttaaaacgaaatcttacaatatttttgtttgaaatt
tttgtaccATATTAAACTTGGGGaggaactttctatttttgtaaaataat
atttttcttaattatactatattatattttccaaagaaaaacaaaaacat
ttagtACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAAAGCCAAGG
AGATCCCAGCCAAATTGGAAAGTTCGTCCCCAATGATCAGATACTCTATT
ATTTTATTACCCGGTGGATAAGTGGTTTCAACCCCATTGTGAAGGGGGCG
GTAAAGTTATAAAGTTGAATCCCGCCCGTCTTCAATTACTCCAATAGAAA
CTTAAAACCCCTTCAAACAAATTGGGATTTCTAATTATACTGATATGTGG
CTCATGGGCTTGAAAAACTCTCGCCAGGACACCGAGACAGGATTGTAGAG
AAagaaagttagatttttttctctcaatatTTCAAGtctgaaaattagat
ttttcaagaGACGGCAATTAGATGTGACTTAGTTGATAATAGGGTCTGCA
TTTTTCTCTTTCAGAATTTGTTCGTGGAGTAATGAACGCTTAAACACact
acaaacaaacaaacatcaGAACTGCgtccaaaaacaaaaacaacacaaCA
TCACGCAATCACCATAACAACTGATGATACGtcatcaatttcaaaattta
gggTTCTTTTTGCGAAAAAAGCAAGAAAGTTGGGATgagttttaaatttc
aaatttaataattctatattattttttaaaacgaaatcttacaatatttt
tgtttgaaatttttgtaccATATTAAACTTGGGGaggaactttctatttt
tgtaaaataatatttttcttaattatactatattatattttccaaagaaa
aacaaaaacatttagtACTCTTGTCGTTctata
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066861-exon-scaffold_462-1491911889:62614..62898 | TCONS_00066861-exon-scaffold_462-1491911889:62614..62898 | Clytia hemisphaerica | exon |
| TCONS_00066861-exon-scaffold_462-1510915933:62614..62898 | TCONS_00066861-exon-scaffold_462-1510915933:62614..62898 | Clytia hemisphaerica | exon |
| TCONS_00066861-exon-scaffold_462-1575043694:62614..62898 | TCONS_00066861-exon-scaffold_462-1575043694:62614..62898 | Clytia hemisphaerica | exon |
| TCONS_00066861-exon-scaffold_462-1491911889:65753..65896 | TCONS_00066861-exon-scaffold_462-1491911889:65753..65896 | Clytia hemisphaerica | exon |
| TCONS_00066861-exon-scaffold_462-1510915933:65753..65896 | TCONS_00066861-exon-scaffold_462-1510915933:65753..65896 | Clytia hemisphaerica | exon |
| TCONS_00066861-exon-scaffold_462-1575043694:65753..65896 | TCONS_00066861-exon-scaffold_462-1575043694:65753..65896 | Clytia hemisphaerica | exon |
| TCONS_00066861-exon-scaffold_462-1491911889:66895..67062 | TCONS_00066861-exon-scaffold_462-1491911889:66895..67062 | Clytia hemisphaerica | exon |
| TCONS_00066861-exon-scaffold_462-1510915933:66895..67062 | TCONS_00066861-exon-scaffold_462-1510915933:66895..67062 | Clytia hemisphaerica | exon |
| TCONS_00066861-exon-scaffold_462-1575043694:66895..67062 | TCONS_00066861-exon-scaffold_462-1575043694:66895..67062 | Clytia hemisphaerica | exon |
| TCONS_00066861-exon-scaffold_462-1491911889:67435..67512 | TCONS_00066861-exon-scaffold_462-1491911889:67435..67512 | Clytia hemisphaerica | exon |
| TCONS_00066861-exon-scaffold_462-1510915933:67435..67512 | TCONS_00066861-exon-scaffold_462-1510915933:67435..67512 | Clytia hemisphaerica | exon |
| TCONS_00066861-exon-scaffold_462-1575043694:67435..67512 | TCONS_00066861-exon-scaffold_462-1575043694:67435..67512 | Clytia hemisphaerica | exon |
| TCONS_00066861-exon-scaffold_462-1491911889:69478..69846 | TCONS_00066861-exon-scaffold_462-1491911889:69478..69846 | Clytia hemisphaerica | exon |
| TCONS_00066861-exon-scaffold_462-1510915933:69478..69846 | TCONS_00066861-exon-scaffold_462-1510915933:69478..69846 | Clytia hemisphaerica | exon |
| TCONS_00066861-exon-scaffold_462-1575043694:69478..69846 | TCONS_00066861-exon-scaffold_462-1575043694:69478..69846 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| scaffold_462 | supercontig | scaffold_462:62614..69846 + |
Blast
BLAST of TCONS_00066861 vs. Swiss-Prot (Human)
Match: MYL1 (Myosin light chain 1/3, skeletal muscle isoform OS=Homo sapiens GN=MYL1 PE=2 SV=3) HSP 1 Score: 146.362 bits (368), Expect = 1.708e-41 Identity = 67/146 (45.89%), Postives = 99/146 (67.81%), Query Frame = 3
Query: 267 SYEDMEEYRDTFSLFDKQGDGKIECGDIGDILRALGCNPTQAEVKKIVADIDSS--GQKRITFEEFIPIFHTMSKKKSSCGFEAFSEGFRIFDRDNNGMVSVAEVRHLLTSLGEKLNSSDVDALVQGLEDSSGMINYEEFVRGVMN 698
S E +E+++ F LFD+ GD KI +GD+LRALG NPT AEV+K++ + + K+I FE+F+P+ +S K +E F EG R+FD++ NG V AE+RH+L +LGEK+ +V+AL+ G EDS+G INYE FV+ +M+
Sbjct: 48 SKEQQDEFKEAFLLFDRTGDSKITLSQVGDVLRALGTNPTNAEVRKVLGNPSNEELNAKKIEFEQFLPMMQAISNNKDQATYEDFVEGLRVFDKEGNGTVMGAELRHVLATLGEKMKEEEVEALMAGQEDSNGCINYEAFVKHIMS 193
The following BLAST results are available for this feature:
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