TCONS_00066874 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066874
Unique NameTCONS_00066874
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2750

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066874 ID=TCONS_00066874|Name=TCONS_00066874|organism=Clytia hemisphaerica|type=transcript|length=2750bp
tttccctttttttctttcGATTGATGATTGGCTGAGAAGATGTATAGATA
TATTCTGCTTAATAATTGATTGTTTATAGGTTTGCTTTAACATGTTTTAT
CTTTCGGTTATACTTTATAGCAAAATAGAAATTGATAAACAAATTATCGT
CTACATGAGCAATTATACAGATTTAGCGGAAAATCAAACCTTATAAATCT
TTGATTTTACAAACACAAAATTGACTTGAATTTTTGAGACACTTTGAACA
AGATATAAATGGGACTTTGTGCAGTTTGAATATTTCTTGTTGGCTTTGAA
TGTATTTGATGGCAATAATGGAGCAAGTACCAAGATATTTGGAGTACATT
AAAATCACAGTACGAAACCCAAGAACGCATATCAGTCGTGATAAAGCATT
ATACACTGACTACGAAATCCGCATTGAGACAAATAATATCGCATTTGCTT
GTACAGACTCATGCGTCAGGAGAAGGTATTCGGATTTCCAATGGCTTCGA
AATAGACTACTCAGCCAATTTGCTTTAGAaagGTCATTACCAGAGCTTCC
ACCAAAGAAAGTGTTTGGAAGATTCAAAAGGCAATTTCTAAAGAATCGAC
AGAAAGGACTGCAGGCATTTCTAGAAGATATTACCGGACAATCAACATAT
CTATCGGACATTGCAGTGCACCTGTTTTTACAAACATCATTAAGTGTGTC
AGAGATccaagacaaaatgacaaatgGTACTGACTCTGGTGGTGAGCTAT
TAGAGGAATATCAATCACCGTCAATACATGGTGGATGCACGTCGTTATCA
AGGAGTTGTTCAGCTTATGAGGATCACGACTCCGGATTCAGCTACAGCAC
AGCAAGCTCGTTAAATGATTGTGTGGCACCTCACACTTCATGTGATTCAA
CAATCGATGGATGCGATATAATGAACCCTAAAGATGTCGAGCAGAATCTA
TCATGCTACGCTGACAGTACTGAACACGAGACGACGTTACAATCGTTAAA
TCCAATCTCTCAAGAGGTGTCGGGTAATGATACAGACCCAGATAACGTTT
CATCGAATTATTATTTCACGTCGGACGATGAAGGTTATTGCTGTAGTAAC
TATGATGCCGACGACGAGGACATTTACCGACAATCACCGAGAGACGAGGA
AAACAATAACCGAGTACCGAGTCTTGCCGAGGATGATGACGACGActctt
tattttgttttcgCATTAAATCCGACCATACCATTTACACAATAAATGAT
GCTATGGAGATTTTAAAACAACGACCAAAATTAACCGATCGTTTGTATTG
TCAAGAAGATAGCGACGACTGTTTCCGAGAATCAGAGTACGACGTCATCG
ATACCGACGATTCTGATAATGCTGATATTGTTGAAGTGATCAATGGTACG
ACCAATAATCCGGATACTTCAAGAATCGAAATAAAAGTTCGAGCACATAC
ATTAAACGATGAAGGACGTCTTATTGAAGTTAAAACTACTCCTGTTCGAG
ACAAAAATAAACTCAAAATCGGTAAAGTCAGATCGTTACCCGGTATCCGT
TTTCCAATCCGAAACGGGAAATCTAAATGTTATCGCTCAACATCAGAAAT
ATCATTAGTTTCAGcaaaaagtcagcaaaaactCGATACAGTTTACGATG
AActtattttaaaagaaagttacCTAACGACATGTACTACTCCAACAAAG
TCACACCGCTCGGAATCTTCTGATGCTGATTACCTTACAACAATAAATCG
CTGTTACAGCGCAGACAGTCAAATAGATACAAATATAGAAACTCAAACAG
AAGACACTGCACCTACCAAATTCTTTTCAATGCTTAAGTTGAatagcaaa
aaacgtaaaaaaactaTACAACGCTTAGAGTTTCAAACACAAGATCATTC
TTCTAAAGGACGTTTTCAAGTAACTACAGTTGACGAAGTTGCAACTccag
aaaatgaagtcaaatTTACACTTGGTGGAAAACACTCCTTACTAACATCA
AGTACAACAGATGAAAAACAATTAGTTAATGGCAGCTTGAAAATGCATAA
TCGTGATCTCTTTGAACATTGCTTTTTAAAATCATACGAAATCCTTTAAA
TTTCAACTGCCgattattttaaaacttttatgttATATTTTATCGAACAA
TATATACGATATGTTGCTGGAACCTTCATTAATGTTTGCTGGTCAAAACT
TTTAATacaattatttctaaaaaaaagatttgtatATAATGTCAAATTTG
TTTACAAAATCGAAAGTCATTAAGAATCTTCGATCTGACAGTAAACTTTA
ACCCATGAACAAACAATAAGTTAAATCAAGCCAAGGTCCTACAATTTAAC
AAATCTTACTTACCCTTTTTCAGTAGCTGGTCTATTGTAGAAAGGGCTCg
gtctttttattttaaaataaggCCTCAAGGCTTGAGGACgaaaatgtttg
ttttggaTAAAAGTTAatagtcaaaaatattttacatccATTAATTTTAT
TAGTCAAAAACCataaaatctaattttaaaaacgttttattttatatatt
ttaatttaTCAATTTCCTTCTCGCCACACTAACTTTTATACCTTAACCAA
ACTTTGTACATAAATTTCTcatatattattttttagatacgccaattaaa
attaaaataacttaaaaatttcatgaaaaataaatactttCTTGAATTTG
GTTGGCCAACATACCTCCATctcctcgttgaaaagataattttaagcgaa
Run BLAST on NCBI

transcript from alignment at scaffold_462:467342..486119+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066874 ID=TCONS_00066874|Name=TCONS_00066874|organism=Clytia hemisphaerica|type=transcript|length=18778bp|location=Sequence derived from alignment at scaffold_462:467342..486119+ (Clytia hemisphaerica)
tttccctttttttctttcGATTGATGATTGGCTGAGAAGATGTATAGATA TATTCTGCTTAATAATTGATTGTTTATAGGTTTGCTTTAACATGTTTTAT CTTTCGGTTATACTTTATAGCAAAATAGAAATTGATAAACAAATTATCGT CTACATGAGCAATTATACAGATTTAGCGGAAAATCAAACCTTATAAATCT TTGATTTTACAAACACAAAATTGACTTGAATTTTTGAGACACTTTGAACA AGATATAAATGGGACTTTGTGCAGTTTGAATATTTCTTGTTGGCTTTGAA TGTATTTGATGGCAATAATGGAGCAAGTACCAAGATATTTGGTAGGTATT GATCATTTATCACTCTCTCTTTAGTTCGAATGCTCACTATGTAtgctaat ttgttcgaattatagagaattCGAGTGACAGAGTATATCGTTAATGTGTA CATCGTTCATGTGTACGAGTCTGCtgaatgaatttcaaatgggttCAATT TTCCAGTTCGGCTAAAATTTTAGGGTGTTTCTCGCACCGGGAACGAAATT TTCTAGTAGTCCCACCGGGTcggtgacacaggggtgtagtaACGGAAATA TTGAAAGCCAGCTTTATTCCTTTGAATAGCCAATTAAACATACGCTTAAA CAAGTCCCCGACCTGCAATGAGTTACAGAGTTGTACGTGCCTGTATGTAT AATTAAAAGTTCAGTTTTGATATAAAACTCTGGTTCAAACAATTATGTAC CAGTAATCGGAAGTGTAAAAAATACCTCCAACTGCTTGCTCGTGACACTT CCTTGTCTGTTCGCATTTCACAATCAAAGGTCttgaaaataagaagaaaa acgCATGTCTGTTTAAGTTGATAATGATCTCTAAATCCTATCAATTAAAC AAATATCTTAATGAGGCATTGTGACTAAAATGGGGATTGTCTACTTTAAG TTAACTACTACAGTCTAATCTGGGGAGCATTCAGATACGGTCTTAGATTC AAACCAAAGTTAGTTCTCTTCCAAGTGATTAGAAAAGGTACCCGATGTAT TTCTCTGAATCCTGTTCGCTATCATATGAAGGATGAAGGGTGGGTAAATA GAGAAATACACCTTCCAAGTAATCGAAAAAGGGCACCCTCACGAGCCAGG ATGTCAGTTATAGAGAAGACGAAGACTCGGTACTTTGAGGCTTAAACttc ccaaaaaataaaaacagttaaGTATCAACAAAAGATTTATAGGTTCTATG AAAGTAACCACTGCACACTCTTGCCGTGTACGGCCAAATTTTCTCTGAAA TAGCTTAAAAATGCTTGTGATGCCAAGAGCATGTAggtcttttgttttgt ttattattttacCCAGCGTGAGCTTGAGAGAGAGGTATTATTATTTCAAC agatttttgatgtttttttttcataaaaacaagGAACATTAAAATGCTTA AGAATTTCTTACAAGTCCTCTTTGGAACTCAATGTTTTTGTTATTGTATG CGACTAGTCGTTCAAACTCGGTACTTGGATGTGAAAAACATATGCCTTTG CCTCATTAGAATACTTGTAATgaatatattttgttttgttcaagACTTAC TATGTGCCTTTTAAGAGCTGAATTCCAAGTTTACATGCGACTAGCTAGAA AGAATAACGTTATCTGTTGTTGAATTGGAAACTTTTGCTTTCATTTCTGT AAAGGTTAAATTTAAAAGTTGACGCCATGTGTATAGTACGTGGTGTACTc tgaatgaaaattgtttttcttagCGCTTACTTCATTTTGAAGGTTATAAA TTTCTTAGGAGGGGCTGCTCAGTTATGGTTAAAGTATGATACTTCTTTGG AACATAGTGCAACAGAGAATAAACTTAGCAAAACCTAGAGAGTGCACAAC TTTTCCGCTCAGCACATTGTATATTACTGCATGAAATTTTAGATTAAGTT ACAGGCAAAGTCTAGCTAAGCAAGTGAAAGCAGCAGGATGTGTGAGTGCT TAAAAGCTTTGTCACAGCAACAAGCAAAGGATGATACTTGATCATGTTTC TTTTAAATGAGAAAGGAAGGTCTTGATCTAAGTTAGGAAATCCTTTGACG ATAGATTATTTAGATTGCTAAAGGAGATAGTTAGTATGGTGATAGTAGAT GCTGGTAACAGTATAGAGCAGCGTGTGAATGTGCTTCACAGTTATTATGG GTTGATTTATGTGATACCTTGTTTTGGATATTTTCTAGGGAGTTTTGAAG TCAGTCAGCAAGAGCTtatcattaaaatatttggttcaTTTATATCAACC ACGCTTGGAAACGTACTCTTTGTAGTTCTAAGCCCCATttaaattaagaa cattctcATTGTTATTTTGGTTTTCGGTGTCAGTTTCCTTTTAAAGAATT TGACCTTGACCTTAATCTGGATAGGGTTCCTCAGTTGACCtttgcatttt ttcaaagttggttGATGACTTTAAAGTTAAACTATACTCTTTGCTTTTTG CGAACTGAACAAAAATATATTGTGTTCTCTGCTAAAACTTCAAGCAAATG CATTGGTAGAGCAAAAAGGAATGTTGGTATTATGAAAATTGTGTAAATTT TCCACAAGAGAGGAACATTGTAAAAATACTCGTGCTTCCTCATTTTGAGG TTAGCGTAAATATCATGTCAATTATCATCTTGTGTTCCTTAtccaaagaa aatatttattcacgAAAAAAGAAGCAATTTCTTGATATTTAGATTACTGA CAGATGCGGTAATGCATCGCGCTCCAAATATTTCCTGAGCTTCTCTTTTG TTTTCGTTGGTATTTTCGTCCGTAATTTTATAATGGTCCAGTTTAAAAGT TCATCGTGTGAAGGATAAACATCTATACGTGCTACTTGAGTTTTCTATGA AGGTCCGTTATTTTTGTAGAGTTGATATTTGGATTTAAGAATACATTGTA AACATTCTTTCCTTGTGTAAATGAACTTaatgatttgaaatatttttgag ttGCTTCTTAACTTTTGGTTCTTTGGGTTTTTGGATGATGTCTTTCCATG ttagtatttttttgtatttttatacaTGAAACAAACTTTTGTAGTTTATT GTATTGAGCTTGCCGTCGATCGTAAGGGTTTTTTTAActggtaaaatgtt ttttaagacGTCCATTTAACATCCACGACGTCTttataacgttaaatgga cgttgaaTTAAAGATTACCCGATTCTAATCCTACAAGGGTCAAATCAATT AGACGCATTATCTTCCAGAAAATCTCCCTTTAAAAAGTGACCGTGCAGAG CTTTAGGAAAACCATTGTAAGGAATTACAGTATTTAATATGAATATAACT TCTACCAGTAGGTCTTATTACCACGCCTCTTTTCTCAAGATATTCAAACT TGATGAAATTATGGAGGATTTTCTATAGATCTTTTCTGGTTATTGTTAAA GCTTAACCTTGATATTAACATTTTGCTTTTTTCTCGTTTCTTTCAGGAGT ACATTAAAATCACAGTACGAAACCCAAGAACGCATATCAGTCGTGATAAA GCATTATACACTGACTACGAAATCCGCATTGAGGTATGTTAGATTTAATC ACTTCAATGATAAGTTTTCCGCCTATGATAGAAAAAATGTTTACTGATAG ATAACAGAGAGCTTTATGACAGTTTTCCTAAAAAGAAGTGATAACGCAAA AATATGTTAATAGGTTTTTGTGGAAAATGCATAGAATTTTTCCAGCGGGA TATACGGCctaccattttcaaaattgacaTCATCTTACACCATATTTTGT TTACACTTATCACTATTTACATGACGTCATCATTGTAAAGAGGAGACACC ACAAGGAAGTGGCATCCGGGAtcgattcgaattatagaatttAGAGAAAG GGAAAAGAATACTTCCAAAGAAAACAAGACAGTGTTATAAATCTGTTTCC TTCAACTGTAATGAGTTATAAAGTGACATGTTTCGATTGGATATCAGTCA TTCATGGgtgttgtttgttgttgttgatgatgACTGTGGTACTTTGAGTT TGAGTACCtgctaaaaataattttgtcttTTAAGCGTTATAGTACAGATT CTAAGAGTTCAATATCTTCCATTCCAAAACGAACTTTACTTGTTTTGATA CACTTTGTTCAACACCAACAGAAAACTCTTATATGCTTTTAAGAAATATC GTTTTGATCTTCCTCCCAGCAGTGCCAATTTGAACAACCCTACCAAATCC ACCGACTTGCCAGCAATCTTTGGAGAGTTGACATtgaactacacgctttt tttttttataagaatacactttataagaatgtccatgatgaaaatggcca aaaaattaagaatatggtaagaatatcaccgtCATGGANNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNtggaatttagcaactgaacctaaga atgccatttttaaagcattttaacctgtagattgccaatttcgatcttaa cctaagaataccgtaagaatacttttggataattttcgccaaaaagttaa gaatatccatgatgaaatgaaaaaacaccattcttatgaaaaaaaaagcg tgtagcttAAGCTGAAACCTATATCTACTGCGTATGTTTCGAAGATTATA TAATCAACTTATTTTCAATCGCAGTTTATAGACACTGGCTTTTTTTAAGT TAGGTAGCGCGAATGAGACAGTCTTTACCTTATCTCCCTAAGACTTAAAT GAAATAGTCGATGgttggtttttctaattttacgATTATGTCTCCAGTTT TGACCACAGCTATTGTCCATATCATCAAAATGTGGATTTCAAATTACATA AATTTGCGGACAATCTTAAATTGGTACCAAGGATTAAGTATTGCTTAATA TGATCACTTACCAATTGGtactattttgaatttttatgggGGGTTTTGAA GGCCAGCTTGTGTGGTTATTATGTGATTAGGGTATAATTAACCAATATCA TGGCCCTAATAACTTGATATTGGTCATTTTAAACAATGTAAACAATCAAG ATTTGAAATGAAATGTTTTACAACCAGCCGGTTAAGAATTAACTCTCTTA CATCTGTCAATTTCTTTCTGAGAATGTGGTCAAAATTTTGGTCTAAATGG TTCCAGTAATGAAAAGCCTCAAAAATCATTTATATAGCTGGTACTTGGCA AATTAATGTTATTTGAAAGCATTGCTAATAGTTTTAATTATAATTAAGCG TTGTTTATTTGGTGCCAAAAAATAAATTGCTTTAATTTCATGCTTTCCAT TTCAACCTacgctttttaatgctttattgTTTTCGACTAATGAACATTTT TTATGACGGTTCGAATTTCGTTCCAATAATAATTTTAAGTAACAAAACCA TGGGCTTGGTTCTTCCTTATACAATGGCCATTAGCGACCGTTATCATGAA AACAAAACGCTAATTACTTGATTGTAAACTAATTCAGCAAAAATAGATAG GTCTAGGTTGTTTTTACGATAAACGAAAACACTAGCAATAAGAATAAAAT CGGAAAAGAAAGTGAATATTGAATTTTGGAGTCGAAAGCTTTCTTGCTCC ATTGCGCTCAAACTATAACAATGTAACAATTTCCTTCATTTTCCACTTTT AGACAAATAATATCGCATTTGCTTGTACAGACTCATGCGTCAGGAGAAGG TATTCGGATTTCCAATGGCTTCGAAATAGACTACTCAGCCAATTTGCTTT AGAaaggtaaaattttgaattttttttttgaattttgaaactcgTTTCAT GTACTGAAGAGTGTACGCTGTCAGCAGCATATGGACAGACTTAGAATTTT CTGTGAGTGATTCAAATCTATAGATTGCTGGCTTAGAATGTTTCTAGGTG ACACTTTTAATTCTTTATCATTGCCTTAAAAGGGTAAAAAAGTACAGAGA GTGAAGAAAATGGAGATCGACAAATATATAAAAGGATTAGATGGGACTAA ATTTAAAACAaactctattcatgatatgcaccactgcaatgtcttctaac attacatcacggacccaacagctgattggttgtaagtgacgtaaaatcag tcaatacgtcactttgaaccaatcagctattgggtggaatggaagacatt gcaatggtgcatatcatgaatataaacttgatttgttttcataattcact tttttctaaTCCCTAAAACTAGCATTGTACCACGAGTCAACCTTAGGCTT TTAAGTTCATTTTTCTGTGCATTAAGATTTTCATTATTCAGACTTTAGTT CGATATTTCGAAAGCAAAGGTTTTATGGTATTACAGGTATCGAATTTTAT TTAgcgatttttcttttcaaacataCCTATTATAATTTTGTATCTCCTCA GTATATTTACTGGTAgtcttaaaaatttcaaaaaatctctaAATTATTAT ACCATGTTTGACAagaaaaaacgttaaaacgatTCAATATCTGCCTGTGT ATACCAAATCATCGCATCGCAGAAATCTTTCGCATGTAGGTCTTTAACTA CGTTGctctataaaatcaaaatttttaattctcAAATAAAATGATATTTC TTTCAACAGGTCATTACCAGAGCTTCCACCAAAGAAAGTGTTTGGAAGAT TCAAAAGGCAATTTCTAAAGAATCGACAGAAAGGACTGCAGGCATTTCTA GAAGAGTAAGTTTCTTATCAAATTGTGGATCAACacagaaattgattttt ctcttcttcattttccataTTTATTTTAATCTATCTATTTGATGATATTC CACTTCTGATTATCTTCTCAACAAACACAAAACTGCTATTTagttcgaat tctatcaaatgtcaacagtcatttttgtATCTGCTGCACaatatattgag acagactttagtataaAACGCAAATTCGAATTCagctttatttttcattt ttcattttgaagttttgaacAGTCCCCATAACGTATACGTATgaatatga aataaatttttgcagATATAGTAATCTAAGGATGTTATTCCAGGAGGTCA gtgattttaaaatgttttaacgCCTTTCTTGACCTCAAGGGACCTCAAGC GCTATTTAAAAATAACGTCACATTTTGAAGCGTGCTTTAGTTCAGACGAA CAAGATTACTATAAGGTTGTTTTTATAAGGTGGAAATGTCCAAAAACTCA CTAGCCTGATTAAATCCTTACACTAGGCTAATCAGCTGATTCGGCTTAAG GCGGGTTAGCTTTACATACAGgtgtgaaaatctgaaaaatcataaaatcg tGAAATTATAGATAAACTCGCGGCGTCAtcattgaacttttttttttacc aaactAATGGacatttgatttgttttcaataaaaacatcgTTAAAATCAA GTCAAACTACAGACGGCTCCGAATGAATGATAGTGTGTGTAGTAAAAAAC TGGATTATCGTATCACGGGATAAACATGCTTTTTTCACGAGTGTAGGAAA TAACTGTTATAACCTCAGCCGCTAAATACTCACGATTCAGTTCAAGTTTA AACGTTCTTTAAGAGATAAAAAGCTAATCATTTTCTGAGTCAAAATACAG AAAATATTAGCCTCATAGTCATTCTTCCAAAATATGAGCCTCCGATTGTT CTtgtgaaattgttcttataaaaaggcaTTTTAGTGATCAGGGCTTTTGT TTTGGAAAAACAGGATATAGCTAATGATAAGTTACAACCCTTTAAAATTC ATTACCTATTAACTGGATAATAATTGCAGACCTTTTTAATGATGGAAAGT GAAAATTGAGATCAAAAGTTCATTGACGCTCATACTCTCTTATGATGTAT TTATTTGGTTATACAAGCCCTGTTTTGTCTTCAATATTTTCGTTAGTTCC ATAAGCAAACAAACAACAGTAATGAGCCCCCCCCAGcagtttgcgtgatg gcgtgattgggactttttcttgcgtgatggcgtgattagagatttttttt ggcgtgatgacgtgatcaagattttggcgtgatgcgtgatagggcaaaat ttgaggcgtgatgcatgatttgggctatttttcgctattttttgcgtgat gacaaattttagcgattttcgtgatgcgtgatggagaaaatttttttgcg tgatggcgtgatcaggggtgccgctggggggcctcagtTATTGTATCTTT TGATGTCAAAATAATAAGTAAGAGTATAAACAACTTGAGTTGCAGCAAAG CTTAACAGTGTGATACGAGTTTTTCTTCTGATTCcaatgaaatttcagag tattcaattttaattagtatcaaaaagaagaattttgCCGGATCCAAAGG ACCAATCTAAAAAATatggattcaaatttttcatagtCCTCTAATATGAA TTTGAAATTCATCAACTGTGCTAATGATTCACGCAAGCCAGACAAAAGCG ATTTCCAGAGAGAGCTACTCGAAAGTCCTTTGACTGATTACTTTCAGATC CTAATCGTATTTTAGTGTTAAAGTGAAAATCTCTACTTGAAAAGATAAAC CATTTGCGAAAGGAAAAAGAAATGTAAACTCgatgttatttttaaaaagt tataacTAAATGATAATGATGTCTGGCAGTTATTCACGGACGTCTGATAA TTTCGTCAGTTTGATAAATCGTGACAAGCTTACAGGAAAAACGTACTCAA TAGTTTTTTAATTCGAAAAGATTCTTCAACATGtagattaattttttgaa aagacttCAATTCATTAGGCTGTTTGAATTCTCTTTGTGTTTGCAAACAA ATTGATAACAGCCTATCAAAAATCTATATTGCCAGAGAAACTTTAAAGAT GAAACTTACATGTTCCATCCATCTTTTCTACATATGTTACTAATAGGTTT ATTTTTAAACTGacatttggaaaattttgactaatggcTTAGCTAATTAT CTAAACTGTTTGCAATACGAAGTTAATTAAAATAACCTGAAAATCATCCA CCTAGCAACTCACGGATCTAAACGCTCAGCATGGAAATACATGCGACCTA ACAAGCTGCAAAAGTATTCTTGTGCATTAAAAAAGTAACACATAAAGGGC CCTTATGATATCAAAAATCTTAATCCTGTTTTGTAAATATGTCTTACAGA CCTTTTAGGGTGCGGTTTTAACTTTCTAATCTCCAACCCTTGTATTCTCA TTGACTTTTTACACAGAACAGAGGGAAAAATGTAACAAATCTTATTGTCC TTAATGACGTCAACTTTCTTACTTTGACAATAGAGTGCTGAGCAAATATG ATGAGGTTATTTTTATAAGGTTACATATAATACGGTTGTCAGAGCGGTCA CATTACAGACATAAAATATGCTCTAACTATCGAAGAGAAAAGGAGAGGTC TTTCAGTATTGTTTTCATAATCAATAGCTTGATTTAATGCAAGCTGTAAA AGAGCAGAGATCGATATTTTTTATGAGTTTGATGTTAAAAAGGGAGCTTA TTAAACGAGGTTTTGTTCTCGCGTAGAAGGTATACGACAAAATTCATAAC ATAACAGGTTGCGTCTAAGTATTGGATTAACATCAACCTGTAATATATAA TTGAATCGCATGTTGCATACAACAAAAATAACATTATACTGATTTCGGAT AATAATGTTTACATCTTACAGTATTACCGGACAATCAACATATCTATCGG ACATTGCAGTGCACCTGTTTTTACAAACATCATTAAGTGTGTCAGAGATc caagacaaaatgacaaatgGTACTGACTCTGGTGGTGAGCTATTAGAGGA ATATCAATCACCGTCAATACATGGTGGATGCACGTCGTTATCAAGGAGTT GTTCAGCTTATGAGGATCACGACTCCGGATTCAGCTACAGCACAGCAAGC TCGTTAAATGATTGTGGTAAGTGAGAATTtagtttttggtattttttttt ctctgcaAAATATGAGGCTACATTGTGAACCCTTAAATAATAAGCAGGAC ACACCCTTTAATATAGAgacattttaattgtttttggtgttttttgttgt tgttgttgttgcttttTGCAGTCAAAGTTATTCTGTTTTTGAGAATGAGT CAATAGGGTTTTACCAGGTGCAGTTTGAGAATATGGTTTTCTAAACGTGA AGGTGCAGGAAAAAGGTTTTTATCTTGGGTTTTTTCTTAAGGACAcaact ttcaatttcaatttatatGCGTGCAGTTTGTGAAAcctatttttagtttt tgatcCATCACTTTTTATTGATCAATCGTCTTACACTGAGGTGTAGTAGT TTACCAAAGAAAATGAATATTTGAAAGTTAATCGGATGAGTTTGTCTGCT TTATGAAGAATATCAGAGATTTGTTTGTTGTTCAGGACTTTCGTGAGAAA TCTAGATAGATTATACTAGACAAAGTTTAACAGACAGAGTACTAGTAGAT TAATGTTAAAAACACGGACCCGACACGAACCTGGTCAAGTCACTGTCAGG GAGAATGGTCTTGTTGAAAGATTAGATATAGCTTAGCTTTATCTTAATCA GGATAACCGTTTATTTAAAGGTTAAAATAAAGATGTGAAACTTTTGTTAA TGTCAGGTTGGAAAGATTATAGCGTGTATTAAGCAGATTGAAAAGTTAAG CATTTCCGACATATGGATTAAGTAAAAGTTCTTGAACTTATCGTTTAAAG TAATCCCAGAAGTCATCCTGTCTCTGTGAAAATTGCCAAGAATTTTAAAC ATGGTTGAATTCTAGACCACGTAGCTatgagtacacgttttttcttttat tagaacctagtttataagaacatataggctgaaattcgtcgaaaaattaa gaacatcttaagaacatgcccagcctcagtttggaaNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNagcagttttaaccgaatttaggggt ggatcttcaaaattcgagagtcaaatattgtccaaattttgccaaattta agtgctctttattttgtatcatattgtctatttagagtagtctgaaaaat taagaacgcatttaagaacatttttaggctgaaaattgctaaaaaaaata agcacatcctcaataggctcagccaaattttaggtgttctaatacaaaaa aaaacgtgtagagttTAAAGAAAGTTGTAATACAGATTTCATAATTTCTC GATACAAATTATTCAAATTCTCCGTCATATACAAAAATGGGATGCAAAAT TAAATTATGTTGTAATTGTATTAGAAGGCGCAGTCTAATAAGGCTTTCAA TACATCATGCACTGCTGTGATTCAtattaaaatgaaaagaaaaggcATGA TGATAATCCATAAAGTATGTAATGAAAATAGTATCTGATGGTGTATTGGG GGTTCCATTTGCATAAGATGTGGTTATGAAATCCTGTAATTTGTAATATT AATTTGGGTAAAAGGTTACATAAAAATTGTTCCTTTGTCATACTGTATAA AATATCGCGTTTCACACAGCATGACCTCAAAAAATACGTCTTTCGATGAT AAAATGTAATTTCACAAGGCCTTTGTAACCTGGACAGTAGACAAGCTGCG CCAACCTACCTATTTATCATAAGTCTTCCTCTTCGAGGTCCTTAACATTG TTAATAATAAAGTACGGGAATTCGATCTTATATTTCGCCTtgtgaaataa ttttcgaaaaatttaaaagttaaaacCACATTTATTACATAATGTGCCTA ATGATCACAAGTATTGCAAGTCCAAAGTTCATTTATTATCAGCATGCTAT TTTTCCACAGTGGAAAATACATCAAATTCCATCTTATTGATTGGGTGTAA TGTTAATCCCCTTTGATAGTGATTGTGATTAATGCATGGAGATAATCAAT TATAGTGAGACAGGAGGcatgaaaaatcatttaaattcATTCCACTATTC AAGCATTTTCTATTATCAATAAACTCCTAAGTAGATCCATTAGgattcaa aatcttaaaataaagttacaggggtttgttaAACCAACCACTTTATAAAA GCACAAACAAATACAAACAGACGCTGTGAATCGAATTGAATCGATGTAGT CGAATTAATCGAACCGAATCAAATTTAGTCGTCTCAGTCAATGTgtattt tgttcgatttttgtTCGATGATCATTaataatcaaaccaatcaaatcaaa aatcgTGATAATAAATTTGATCGAGTTTGAAGTCCTACGACAATCGGAAT TACGTTTGACTTGGTCGATTCGGCTTCGTTCGATTACCATTGACTAGACA GAATATTTTAAAAGATCAAGGTGTGAACAGGAGCAAAACGATTTACATCA AATGTATTATGTACTTGCTTCAAATGTTTATGAGGAACGCAAGACTAGAA TTCAAGTTTCTTTAGAGGTATCGTGCATCCTACACATAAAATTGAGTCTA TTTTAGCGTTCTATAATAAGATTCTTGTATACACAAAATCACCGTTCCCA ACTTTAAACAATGACCTTGAACTTTAGAGTGTAACCTTTTCCTGACCACA ATACAAGGCACAAAGGGTGACAAATACGTCAAAAAGGGGAAAAGAGGAAG TGCCCGGCCTTAGTTTCATGGCAATAGATCGCGTGATTTTTCACGCGATT gtcttttgtaaaatatactgGATAAACATCAAGGTAAAATTAAACTGCAA ACAATGTCGACCtcccattaaaaaaaaacccaCAAGTTTTTAGAGTTTAA GTTTCTTTGTATTCAAACTTTTTGTAAGCACTCAAACTCAATCAAAAGTA CCGTTTGCCATAGATAGATAGCAAGTTATTTAGATACAATTggatgtttc ttattttcaagaAGCAAAGTGAAAGAAGGAACAAAGAATTTGTGAGGATA GGAATCAAAAACCTGTACTATATATTGGGATGAGtagagaaaaacttttt ctgagagttcttacaaaaaaattgaatcagcATGATTTTAGAGCATGAGA AATAATCACGTGGATTTCTGTAACAAAGATGGTAGATTGGTtgtttcaaa acaatagaattctATTGACGTCAGCTAATGACTTGCCTAACGACGGCATA TTTTTTCTTGCATTCCAATTTCAAAGACAAACAGAAAAAAACATGAGAGG TTCGATTGTCTATGTCGTTATAGTTAATTGTCTCCAGGGAGATATGCTAT TGTTTGAATTACTtagtttaaaataaatattttttctttgtgcTATTGGT AATAGCTTTTCCTCAGTGCCCTTGCACTAGGCTATGAAAATAATGGTATA AGCTTTACATGGtatagatttttgattttgagagttCAAGGATAGTTCTC AAGAATAGCTTACTCCATGTGCAATTGACTATCTTTGGTATTGGTGAAGC ATTGGTGTAGAACTTGTTTACTTTATATTGTGGAAGATCGTAAATATTGA ACCAAACCAAGAAGCAAACTAGCTCAAACCAAAAAAGTAATTATActctt ttctaaatttttctttttaagctATTTCGGGACCATATTGGACATACCAA TATGGAGAAATAGAATGTCCGTAAATGAAGGCTTTATTGATTGAATTAAA TTTGTCTTTTCGCCCttcttttttggtaaaaatataaatataatataata tcttGAATACTCATGGTGACCTGGAAGAAACTTTCTTGAGCTCAATAGAG TGTACATAGTGATGATTGATGGAAAGTTTATAAAAGGATATAATAATGTT TCGGCTGACGTTTTGAAGTACAGGACATCAATTAGGAAGTGAACTAAATA TAACAGTAAGAGAGAGAAGAGAGTGAGATATCCATGGTAATGAGAAACAG TGTGAAACTCTGTAAAAACTTGTTGATAGTTTGTTTACTTTACTTTTGCT GTCCTGAGAAATTTGGTGACATACTCCTGATTTTTTAGTGACCTGTCATT TTCGGTTTTTTTGGTGGTGTAATCACTCTATCTTTCAGTCACCTAGGTTA TTATCTCCAAAGAACTTTACACACGTGAAGGCATTTTTTCTTTGCTCCTG ATTCAAAGTGTTTACCTAATCAAAAGTAAATTATATTTGGGAGCTTCGTG ATGAAAAAACCTCCTTACTCGCCTCCTTACTTAAGCGATCGATCATATAC CCGATTTGAACTCATTTCAGGATATTTGCGTTATTGTCTCATACGAGTAG GTCATTTGAACAcattttacacccctgtgtcacagacccggtggacccct cgccccggtggaaaaaaaggccaaaaaatcgtccccggtggaaaaaatgc cctacattttcaaccccactgggaaattgccctatgattctatccccatt gaaaattgaatggaaaaaattggactccaaaaccatccccactggaatat tttagctggaaacaatagattttctatccctattgggatttcgatagaaa ttttcattacaaCTGGCGGAAAAGGTTTCACCGGGGaactgagaaagggg tgtactAGATAAATGGATGATTTCACATAAAACTTTAAACAGTATTGAGA AAAGTTACGCaatcgttttttataagaaataaaaNTTGGGATTTCcatta gaaattttcatccccactgagggaaaaggttccaccggggcactgagaca ggggtgtaattttAGATATTTGACCTAAACAAGATTTTTTGGGAGGTATC AAAAGTTACTTCCTGAATTCCTGACATCATCAAAGGCTTTCTTTATAATA TGCCCACATACAGGATTTCAAATCTGTCAACACAAAATACactttaaaca aaaaaagttgTGAAATTTATGCCAATGTTAACCTGTgccttttcaaaaca tttaaaacatggTATCGAatgcaaataaaaaatgttctaACTTCTGACGT CAGAGTATCTCTGGTATGACTCGTGATTTGAGGATgcattcattttttgt tttgttgattttgttctATGGTATCCATATATCTTTATGTTTACGAGTTT TCTATCATTTTGGATAACGACAAGGTCAAAACAGGAGTTCGAATgaggtt tttcaaaaataatatatGTCTCTGATTTCAAGTCGGTAATATAAAAGTAA GTTAgacctttctttttcttcatttaagTTGCTGATTTAAGTGAAAAGTT AACTTAAAGATATTGGTTTAAACCATGGAGACTGGTGGCTTCGAGCAATG GTTTATCGTATTTCTTTCATCACAGTAAACCCTTTACAACAATTTAGACA AGAAAGAGTTGCAAGCAGTGACAAACAACGAGAAAAAAATAGACATAAGA CTCAGAGGAGCAGAGTGGACAGACAATATTAGAAACGAGAAAGCAAAGTA GATACACGGTGCGAGTCGAAAGAATAAGTGTAAGCGTATATTCGCGTTGG ATTTGCCGATTAAAACGATTAAATAATGGGAAAACATGCTTATACGATCA TAGCGCGTGAAAAAAACAAGGTTTGAAGGAAAAAATGATATTAGTGTTAT TGTAATGATTCTTAATCATAAACGATAATCTAAAGTTTTGACAAGCCGTT GAATTCTGTTTATTTAGATCATAGTGAATCGCTTTAGAGGCAGATTTACT TAAtgaaaatatgagaaaaaaagGAGCGACTATGGGACAGACTATCATTT TGACTGTGTCTTTATCGCTGTCCCCTTTTTGTGTTTGCGCGTGAGGTGCT TTGAGGTGCTTTTGTTTATTGCTTGCGCTACATGGtgtttttatgaccaa aatttgtatttttttatgaatgggAAATTTTGCTTTTGACAAAGAGTGAT TTGTTTGTAAGAAGAAAATttcacatgatcaaaaaattgtttttgagaca ttgaatttgaatttgttgCTGTGGtgattttgttttcttgatcaTGATAG ATATGAGAAATTGTTGGAAAGAAGAACTTGACTTATTTGTTGTACGcaaa aattccattgaaaaggGTATCTACTTAAACTTACTTTTCGTGTTATCCAG GCTTGATATTTAATACTAATTATGGTCCACGcaatgaaattgaaagttgG GAACCAATgaatatagagtctaaggaAGCGCGACCAAACatttttacttt gcaaaaaaatggGCGTAGGCCCTGCTAATAATggttttcttgaaaagaaa aagaacactAAAGTGACTTTATTCAGCATTTAAATTATAACTCTCTCAAA GACAGTTTAAAAACACATAGTTACAGCAATCTGTAGTGTCTTTGCCAGGA AAGCTACattgtaataaaaaaaatttgtcgaGACAGGGTGTGTCCAAGCA GATGTTCAGTAGGATACGCCTCAGTCCACCTTTAAAGGAAATACAATTGA CCTTCTCTGAAATAGGCGAAAGAGGAAAAATGAAGTTCGATTAGCAATAT GCAAACAATATTTAAGCTAGCATCCAGGATGGCTTTTAAAGGGCTGTAAA ATGATCAAATGACATCATTAGGAAGTCGTAAAATCGCATCCTGGAATATG AAATGTTATTTGCTAAACAGAAGGCggtaattatttaaaaaatgtcaata taGGAGAACTGTTCATATCAGTCAAGTATGCTTTTCTACTCAACAGTATT Aagttcttttttatatcaaatttcatgaattattttctttgttttttaca GTGGCACCTCACACTTCATGTGATTCAACAATCGATGGATGCGATATAAT GAACCCTAAAGATGTCGAGCAGAATCTATCATGCTACGCTGACAGTACTG AACACGAGACGACGTTACAATCGTTAAATCCAATCTCTCAAGAGGTGTCG GGTAATGATACAGACCCAGATAACGTTTCATCGAATTATTATTTCACGTC GGACGATGAAGGTTATTGCTGTAGTAACTATGATGCCGACGACGAGGACA TTTACCGACAATCACCGAGAGACGAGGAAAACAATAACCGAGTACCGAGT CTTGCCGAGGATGATGACGACGActctttattttgttttcgCATTAAATC CGACCATACCATTTACACAATAAATGATGCTATGGAGATTTTAAAACAAC GACCAAAATTAACCGATCGTTTGTATTGTCAAGAAGATAGCGACGACTGT TTCCGAGAATCAGAGTACGACGTCATCGATACCGACGATTCTGATAATGC TGATATTGTTGAAGTGATCAATGGTACGACCAATAATCCGGATACTTCAA GAATCGAAATAAAAGTTCGAGCACATACATTAAACGATGAAGGACGTCTT ATTGAAGTTAAAACTACTCCTGTTCGAGACAAAAATAAACTCAAAATCGG TAAAGTCAGATCGTTACCCGGTATCCGTTTTCCAATCCGAAACGGGAAAT CTAAATGTTATCGCTCAACATCAGAAATATCATTAGTTTCAGcaaaaagt cagcaaaaactCGATACAGTTTACGATGAActtattttaaaagaaagtta cCTAACGACATGTACTACTCCAACAAAGTCACACCGCTCGGAATCTTCTG ATGCTGATTACCTTACAACAATAAATCGCTGTTACAGCGCAGACAGTCAA ATAGATACAAATATAGAAACTCAAACAGAAGACACTGCACCTACCAAATT CTTTTCAATGCTTAAGTTGAatagcaaaaaacgtaaaaaaactaTACAAC GCTTAGAGTTTCAAACACAAGATCATTCTTCTAAAGGACGTTTTCAAGTA ACTACAGTTGACGAAGTTGCAACTccagaaaatgaagtcaaatTTACACT TGGTGGAAAACACTCCTTACTAACATCAAGTACAACAGATGAAAAACAAT TAGTTAATGGCAGCTTGAAAATGCATAATCGTGATCTCTTTGAACATTGC TTTTTAAAATCATACGAAATCCTTTAAATTTCAACTGCCgattattttaa aacttttatgttATATTTTATCGAACAATATATACGATATGTTGCTGGAA CCTTCATTAATGTTTGCTGGTCAAAACTTTTAATacaattatttctaaaa aaaagatttgtatATAATGTCAAATTTGTTTACAAAATCGAAAGTCATTA AGAATCTTCGATCTGACAGTAAACTTTAACCCATGAACAAACAATAAGTT AAATCAAGCCAAGGTCCTACAATTTAACAAATCTTACTTACCCTTTTTCA GTAGCTGGTCTATTGTAGAAAGGGCTCggtctttttattttaaaataagg CCTCAAGGCTTGAGGACgaaaatgtttgttttggaTAAAAGTTAatagtc aaaaatattttacatccATTAATTTTATTAGTCAAAAACCataaaatcta attttaaaaacgttttattttatatattttaatttaTCAATTTCCTTCTC GCCACACTAACTTTTATACCTTAACCAAACTTTGTACATAAATTTCTcat atattattttttagatacgccaattaaaattaaaataacttaaaaatttc atgaaaaataaatactttCTTGAATTTGGTTGGCCAACATACCTCCATct cctcgttgaaaagataattttaagcgaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041820XLOC_041820Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066874-exon-scaffold_462-1491911889:467342..467682TCONS_00066874-exon-scaffold_462-1491911889:467342..467682Clytia hemisphaericaexon
TCONS_00066874-exon-scaffold_462-1510915933:467342..467682TCONS_00066874-exon-scaffold_462-1510915933:467342..467682Clytia hemisphaericaexon
TCONS_00066874-exon-scaffold_462-1575043694:467342..467682TCONS_00066874-exon-scaffold_462-1575043694:467342..467682Clytia hemisphaericaexon
TCONS_00066874-exon-scaffold_462-1491911889:470838..470924TCONS_00066874-exon-scaffold_462-1491911889:470838..470924Clytia hemisphaericaexon
TCONS_00066874-exon-scaffold_462-1510915933:470838..470924TCONS_00066874-exon-scaffold_462-1510915933:470838..470924Clytia hemisphaericaexon
TCONS_00066874-exon-scaffold_462-1575043694:470838..470924TCONS_00066874-exon-scaffold_462-1575043694:470838..470924Clytia hemisphaericaexon
TCONS_00066874-exon-scaffold_462-1491911889:473094..473197TCONS_00066874-exon-scaffold_462-1491911889:473094..473197Clytia hemisphaericaexon
TCONS_00066874-exon-scaffold_462-1510915933:473094..473197TCONS_00066874-exon-scaffold_462-1510915933:473094..473197Clytia hemisphaericaexon
TCONS_00066874-exon-scaffold_462-1575043694:473094..473197TCONS_00066874-exon-scaffold_462-1575043694:473094..473197Clytia hemisphaericaexon
TCONS_00066874-exon-scaffold_462-1491911889:474051..474146TCONS_00066874-exon-scaffold_462-1491911889:474051..474146Clytia hemisphaericaexon
TCONS_00066874-exon-scaffold_462-1510915933:474051..474146TCONS_00066874-exon-scaffold_462-1510915933:474051..474146Clytia hemisphaericaexon
TCONS_00066874-exon-scaffold_462-1575043694:474051..474146TCONS_00066874-exon-scaffold_462-1575043694:474051..474146Clytia hemisphaericaexon
TCONS_00066874-exon-scaffold_462-1491911889:477113..477357TCONS_00066874-exon-scaffold_462-1491911889:477113..477357Clytia hemisphaericaexon
TCONS_00066874-exon-scaffold_462-1510915933:477113..477357TCONS_00066874-exon-scaffold_462-1510915933:477113..477357Clytia hemisphaericaexon
TCONS_00066874-exon-scaffold_462-1575043694:477113..477357TCONS_00066874-exon-scaffold_462-1575043694:477113..477357Clytia hemisphaericaexon
TCONS_00066874-exon-scaffold_462-1491911889:484243..486119TCONS_00066874-exon-scaffold_462-1491911889:484243..486119Clytia hemisphaericaexon
TCONS_00066874-exon-scaffold_462-1510915933:484243..486119TCONS_00066874-exon-scaffold_462-1510915933:484243..486119Clytia hemisphaericaexon
TCONS_00066874-exon-scaffold_462-1575043694:484243..486119TCONS_00066874-exon-scaffold_462-1575043694:484243..486119Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_462supercontigscaffold_462:467342..486119 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 4.11559 2.03198 0.980908 0 0.142606 0.507405 0 0 5.90705 3.06446 1.16549 1.02648 1.09521 3.43461 4.36592 3.00248 0 0.179909 0 0 0 0 0.348724 0 0 0.118166
Blast
BLAST of TCONS_00066874 vs. Swiss-Prot (Human)
Match: SNX11 (Sorting nexin-11 OS=Homo sapiens GN=SNX11 PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.677e-22
Identity = 53/123 (43.09%), Postives = 71/123 (57.72%), Query Frame = 3
Query:  342 EYIKITVRNPRTHISRDKALYTDYEIRIETNNIAFACTDSCVRRRYSDFQWLRNRLLSQFALERSLPELPPKKVFGRFKRQFLKNRQKGLQAFLEDITGQSTYLSDIAVHLFLQTSLSVSEIQ 710
            E I + V++PR         Y DY+I + TN+ AF    SCVRRRY +F WLR +L     L   +PELP K  F     +F++ R++GLQ FLE +      LSD  +HLFLQ+ LSV EI+
Sbjct:   15 EVITVRVQDPRVQNEGSWNSYVDYKIFLHTNSKAFTAKTSCVRRRYREFVWLRKQLQRNAGLV-PVPELPGKSTFFGTSDEFIEKRRQGLQHFLEKVLQSVVLLSDSQLHLFLQSQLSVPEIE 136          
The following BLAST results are available for this feature:
BLAST of TCONS_00066874 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SNX111.677e-2243.09Sorting nexin-11 OS=Homo sapiens GN=SNX11 PE=1 SV=... [more]
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