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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066942 ID=TCONS_00066942|Name=TCONS_00066942|organism=Clytia hemisphaerica|type=transcript|length=1590bpRun BLAST on NCBI protein sequence of TCONS_00066942-protein >TCONS_00066942-protein ID=TCONS_00066942-protein|Name=TCONS_00066942-protein|organism=Clytia hemisphaerica|type=polypeptide|length=445bp MSSTPIPLNKVSNGVHKNKRLEGYFEDAATGLINKKLPKELLLRVFSFLDRun BLAST on NCBI transcript from alignment at scaffold_462:17955..32861- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00066942 ID=TCONS_00066942|Name=TCONS_00066942|organism=Clytia hemisphaerica|type=transcript|length=14907bp|location=Sequence derived from alignment at scaffold_462:17955..32861- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_462:17955..32861- >TCONS_00066942 ID=TCONS_00066942|Name=TCONS_00066942|organism=Clytia hemisphaerica|type=CDS|length=18732bp|location=Sequence derived from alignment at scaffold_462:17955..32861- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00066942 vs. Swiss-Prot (Human)
Match: FXL20 (F-box/LRR-repeat protein 20 OS=Homo sapiens GN=FBXL20 PE=1 SV=2) HSP 1 Score: 489.96 bits (1260), Expect = 4.847e-169 Identity = 238/433 (54.97%), Postives = 307/433 (70.90%), Query Frame = 3
Query: 204 NGVHKNKRLEGYFEDAATGLINKKLPKELLLRVFSFLDIVALCRCAQVSKAWNLLALDGSNWQQVNLFEFQRDVRTNVVQSLSRRCGGFLKTLNLKGCQGIEDDALRTFAQNCKNIEELVLCDCNKITNKTCIYLSNFANKLVVLDFESCTQVDDLGLAKIGSGCSRLEHLNIAWCRKVSSAGLIAIAHGCPSLELLVASGCVSIRDEGLRVLAVHCGGLKKIVLQGCTNITDNGIKPLGDNCNALEFINISECEALTDQTLKYIADGCHELKTLEAARCSQFTDTGFSTLARGCHSMQRLDLEECTLITDHTLHCLSYNCSEIVNLTFSHCELITDEGIRHLAGGTCAIEKLEIIELDNCPLITDQALEYLMNCRSLNRLELYDCHNITRGGIRRLKSRLPNVRVQAYFAPVTPPPATPNRRQRSCRCCEIL 1502
NGV K+ R E F ++ +INKKLPKELLLR+FSFLD+V LCRCAQVS+AWN+LALDGSNWQ+++LF+FQRD+ VV+++S+RCGGFL+ L+L+GC G+ D+ALRTFAQNC+NIE L L C K T+ TC LS F +KL LD SCT + ++ L + GC LE LNI+WC +V+ G+ A+ GC L+ L GC + DE L+ + HC L + LQ C ITD G+ + C+ L+ + S C +TD L + C L+ LE ARCSQ TD GF+TLAR CH ++++DLEEC ITD TL LS +C + L+ SHCELITD+GIRHL G CA ++LE+IELDNCPLITD +LE+L +C SL R+ELYDC ITR GI+RL++ LPN++V AYFAPVTPPP+ RQR CRCC IL
Sbjct: 6 NGVTKS-RFE-MFSNSDEAVINKKLPKELLLRIFSFLDVVTLCRCAQVSRAWNVLALDGSNWQRIDLFDFQRDIEGRVVENISKRCGGFLRKLSLRGCLGVGDNALRTFAQNCRNIEVLNLNGCTKTTDATCTSLSKFCSKLRHLDLASCTSITNMSLKALSEGCPLLEQLNISWCDQVTKDGIQALVRGCGGLKALFLKGCTQLEDEALKYIGAHCPELVTLNLQTCLQITDEGLITICRGCHKLQSLCASGCSNITDAILNALGQNCPRLRILEVARCSQLTDVGFTTLARNCHELEKMDLEECVQITDSTLIQLSIHCPRLQVLSLSHCELITDDGIRHLGNGACAHDQLEVIELDNCPLITDASLEHLKSCHSLERIELYDCQQITRAGIKRLRTHLPNIKVHAYFAPVTPPPSVGGSRQRFCRCCIIL 436 The following BLAST results are available for this feature:
BLAST of TCONS_00066942 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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