TCONS_00067003 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067003
Unique NameTCONS_00067003
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length592

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067003 ID=TCONS_00067003|Name=TCONS_00067003|organism=Clytia hemisphaerica|type=transcript|length=592bp
GAAAAACATGATTTACAACAGACAGCAAGAGATGTCTCACTTTGTATACG
CTATCTTAATCTTTTCACGTGTTGCCTGACGCTTGTTCTCATCTTCTGGC
TGGTTCCTTTATCCGAGAAACGTTTCATCCttcatcgatttttgattttg
ggtTTGGCATTGCACGAtgtcttcttcattcttcaaaGTCGATACATATT
CGATCTCGAGAAACAGCAACACTGTTCACGAATGTTCATTCTGTCCACTT
ATTTCCACGTGGCAGTTCTTCTGGTGATGTTTAGTGAAGGCTTCTATCAA
TTCCGTCAATTCTATTTCATCATTGTGACAAAACATAGAGAACCTTATTA
CATTGTTTTCTCTTATGTTGTGGCAGCATTGATTGTATTCGGTGTATTTT
TGCCAGGAATGTATTATGATACAGATACTGAATATTGTTGGAGCCGATAT
TATTGGAACAAATATCGATGGGCGTTGAATTCTATTGTCATTATTGTCCT
TTGTTTAAATTTCTTGATCATGATCTATATGATGAATTTAATCGCATCCA
AATTGAGAGCTGACAAAAGACCTGGCGTCATCAAAGCCAAGT
Run BLAST on NCBI

protein sequence of TCONS_00067003-protein

>TCONS_00067003-protein ID=TCONS_00067003-protein|Name=TCONS_00067003-protein|organism=Clytia hemisphaerica|type=polypeptide|length=197bp
EKHDLQQTARDVSLCIRYLNLFTCCLTLVLIFWLVPLSEKRFILHRFLIL
GLALHDVFFILQSRYIFDLEKQQHCSRMFILSTYFHVAVLLVMFSEGFYQ
FRQFYFIIVTKHREPYYIVFSYVVAALIVFGVFLPGMYYDTDTEYCWSRY
YWNKYRWALNSIVIIVLCLNFLIMIYMMNLIASKLRADKRPGVIKAK
Run BLAST on NCBI

transcript from alignment at scaffold_462:780110..782380-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067003 ID=TCONS_00067003|Name=TCONS_00067003|organism=Clytia hemisphaerica|type=transcript|length=2271bp|location=Sequence derived from alignment at scaffold_462:780110..782380- (Clytia hemisphaerica)
GAAAAACATGATTTACAACAGACAGCAAGAGATGTCTCACTTTGTATACG
CTATCTTAATCTTTTCACGTGTTGCCTGACGCTTGTTCTCATCTTCTGGC
TGGTGTAAGTATAAAATACTGACCAATACCTTCCCATTATACAACCTCAG
GTAGTCAATGTGTATCACCGATGAAAATTTCAAAAGTAGGCTAGCGTGTT
GACCATGTGGGATAAAAGGAATCATTTTCAGCTAACTACGCTTAGCCAAT
CACTCAAAATCATCATTTAAACCTCAGACCCGCTATTCTAACGTTCGAAT
CTGCAAATACCAAGCATATATAATGTTAAGGGTGTTGAAACAACTTTGGT
GTGAGACTGGACCCCAATTAGAACTCATATGTACTCATTCTAATTTATTC
AACAGTCCTTTATCCGAGAAACGTTTCATCCTTCATCGATTTTTGATTTT
GGGTTTGGCATTGCACGATGTCTTCTTCATTCTTCAAAGTCGATACATAT
TCGATCTCGAGAAACAGGTAAAAAGTGTTTTTGCTGTAAGCAAGAAAAAT
CCAAGGAAAAAACTTCTCAGATATTTTTTGAATAAATCTACATTACTAAA
TATGAAATTGCCAAAACGGTTCACTGGTTCACTAACACCTTTCTAGGACA
TTTCACTCTCTATTATTCGAGCTCTCCTTAGCCCGAACAATTGACAGTTT
CTTTTGTAGTCCGAGTTATGGAGAACCGTTTTATGACCAAAAAGATTGAT
TGAACTCTTTTTGGTCGAATGGTGAAAAGCTACCACTTCTAAATAAGTCG
CGTTGGAAAGATGAAGTTTCTCAATAGATTACAGTTTTTCAAAAAAAACA
CTACGACTTTTTTTAATGCCCTGTGTAAATTAAATAATATTTTTTCCTTT
CATAGCAACACTGTTCACGAATGTTCATTCTGTCCACTTATTTCCACGTG
GCAGTTCTTCTGGTGATGTTTAGTGAAGGCTTCTATCAATTCCGTCAATT
CTATTTCATCATTGTGACAAAACATAGAGAACCTTATTACATTGTTTTCT
CTTATGGTAAGTTAGCTCACACGTGCTCATAATACTTTCATTCCAACTGG
GATTCTGATACTCTCGAAATCACTTTTTTTAAACACCGGCCATTAGGAGA
GATCAATTCTTGTTGTAAGCTAAACAGGTGACCCTTAGATTGGAGAAACT
CCGGGGTACTAGGATTACGAAATGACAGGAGGGGGTGCCGCCCGATTTTT
GAGAATCGGAAATTCTAGGGTCTAAAACCGAGGGGAAAATCCGAAATTTT
GTGACCCTTACTGGAACTTTTCTCCCCAAATTTTACCTTTTTAGAAATAA
ATATCAGTTTATTTTTCAAACGGCTAATAACAATACCATAATGTTAAAAA
TTTCCGCTCATATAGCATGAAAGTGTAGACAATACTTTAAACTTTTTTTG
CAGTTGTGGCAGCATTGATTGTATTCGGTGTATTTTTGCCAGGAATGTAT
TATGATACAGATACTGAATAGTAAGTATTTATTAAATCTGAACTTTTTCA
GGCCCGGAGAGCTGCTGGGAACTAAGAGCTTTCCAGAGCTCTCGTAGTAG
ACGATGCTATTGTCCGTCACAGGGAAGATATATATGTACAGTCGTAACTG
GCGGCATACGGAAAAATAGCCTGTACCCTGCTTGTAGCAAGGAGCATTAA
AGACTATCTGACTATGCCAGACAGCGTACATAAAGATATCACTCGATTCA
ATGAGGAGAAGGGTTTTTAGACGGGGGAGTTGGGGTGACCTTCTTCGGCT
TATTATCAGAGGCAGCTGTGATTTGCGAATGTAGTTATACAAAACTTTTG
TTCAAACTTTTTATTACAGTTGTTGGAGCCGATATTATTGGAACAAATAT
CGATGGGCGTTGAATTCTATTGTCATTATTGTCCTTTGTGTAAGTTTTGT
TTTGTTTCATAAATGCTGAGAGTGAACTGGAAACACATTTTTCACATCCT
TCACGTATGAATTGGATTTTGGCGAAAATATTTTTTGCAAGCAGAAAAAG
CCCCGAAATAAATTTAAATTTGGAGTGGAACTTATTTGGGCGGTGCATCA
ACTTTTTTGTTATTTTTGCAAGAACGTATTCGCTAAAAGTAAGTTCCCTT
TATACAGTATTTCTTTTTTGACCGTCATTTCAGTTAAATTTCTTGATCAT
GATCTATATGATGAATTTAATCGCATCCAAATTGAGAGCTGACAAAAGAC
CTGGCGTCATCAAAGCCAAGT

Coding sequence (CDS) from alignment at scaffold_462:780110..782380-

>TCONS_00067003 ID=TCONS_00067003|Name=TCONS_00067003|organism=Clytia hemisphaerica|type=CDS|length=3546bp|location=Sequence derived from alignment at scaffold_462:780110..782380- (Clytia hemisphaerica)
TTAAATTTCTTGATCATGATCTATATGATGAATTTAATCGCATCCAAATT
GAGAGCTGACAAAAGACCTGGCGTCATCAAAGCCAAGTTGTTGGAGCCGA
TATTATTGGAACAAATATCGATGGGCGTTGAATTCTATTGTCATTATTGT
CCTTTGTTTGTGGCAGCATTGATTGTATTCGGTGTATTTTTGCCAGGAAT
GTATTATGATACAGATACTGAATACAACACTGTTCACGAATGTTCATTCT
GTCCACTTATTTCCACGTGGCAGTTCTTCTGGTGATGTTTAGTGAAGGCT
TCTATCAATTCCGTCAATTCTATTTCATCATTGTGACAAAACATAGAGAA
CCTTATTACATTGTTTTCTCTTATGTCCTTTATCCGAGAAACGTTTCATC
CTTCATCGATTTTTGATTTTGGGTTTGGCATTGCACGATGTCTTCTTCAT
TCTTCAAAGTCGATACATATTCGATCTCGAGAAACAGGAAAAACATGATT
TACAACAGACAGCAAGAGATGTCTCACTTTGTATACGCTATCTTAATCTT
TTCACGTGTTGCCTGACGCTTGTTCTCATCTTCTGGCTGGTTTAAATTTC
TTGATCATGATCTATATGATGAATTTAATCGCATCCAAATTGAGAGCTGA
CAAAAGACCTGGCGTCATCAAAGCCAAGTTGTTGGAGCCGATATTATTGG
AACAAATATCGATGGGCGTTGAATTCTATTGTCATTATTGTCCTTTGTTT
GTGGCAGCATTGATTGTATTCGGTGTATTTTTGCCAGGAATGTATTATGA
TACAGATACTGAATACAACACTGTTCACGAATGTTCATTCTGTCCACTTA
TTTCCACGTGGCAGTTCTTCTGGTGATGTTTAGTGAAGGCTTCTATCAAT
TCCGTCAATTCTATTTCATCATTGTGACAAAACATAGAGAACCTTATTAC
ATTGTTTTCTCTTATGTCCTTTATCCGAGAAACGTTTCATCCTTCATCGA
TTTTTGATTTTGGGTTTGGCATTGCACGATGTCTTCTTCATTCTTCAAAG
TCGATACATATTCGATCTCGAGAAACAGGAAAAACATGATTTACAACAGA
CAGCAAGAGATGTCTCACTTTGTATACGCTATCTTAATCTTTTCACGTGT
TGCCTGACGCTTGTTCTCATCTTCTGGCTGGTTTAAATTTCTTGATCATG
ATCTATATGATGAATTTAATCGCATCCAAATTGAGAGCTGACAAAAGACC
TGGCGTCATCAAAGCCAAGTTGTTGGAGCCGATATTATTGGAACAAATAT
CGATGGGCGTTGAATTCTATTGTCATTATTGTCCTTTGTTTGTGGCAGCA
TTGATTGTATTCGGTGTATTTTTGCCAGGAATGTATTATGATACAGATAC
TGAATACAACACTGTTCACGAATGTTCATTCTGTCCACTTATTTCCACGT
GGCAGTTCTTCTGGTGATGTTTAGTGAAGGCTTCTATCAATTCCGTCAAT
TCTATTTCATCATTGTGACAAAACATAGAGAACCTTATTACATTGTTTTC
TCTTATGTCCTTTATCCGAGAAACGTTTCATCCTTCATCGATTTTTGATT
TTGGGTTTGGCATTGCACGATGTCTTCTTCATTCTTCAAAGTCGATACAT
ATTCGATCTCGAGAAACAGGAAAAACATGATTTACAACAGACAGCAAGAG
ATGTCTCACTTTGTATACGCTATCTTAATCTTTTCACGTGTTGCCTGACG
CTTGTTCTCATCTTCTGGCTGGTTTAAATTTCTTGATCATGATCTATATG
ATGAATTTAATCGCATCCAAATTGAGAGCTGACAAAAGACCTGGCGTCAT
CAAAGCCAAGTTGTTGGAGCCGATATTATTGGAACAAATATCGATGGGCG
TTGAATTCTATTGTCATTATTGTCCTTTGTTTGTGGCAGCATTGATTGTA
TTCGGTGTATTTTTGCCAGGAATGTATTATGATACAGATACTGAATACAA
CACTGTTCACGAATGTTCATTCTGTCCACTTATTTCCACGTGGCAGTTCT
TCTGGTGATGTTTAGTGAAGGCTTCTATCAATTCCGTCAATTCTATTTCA
TCATTGTGACAAAACATAGAGAACCTTATTACATTGTTTTCTCTTATGTC
CTTTATCCGAGAAACGTTTCATCCTTCATCGATTTTTGATTTTGGGTTTG
GCATTGCACGATGTCTTCTTCATTCTTCAAAGTCGATACATATTCGATCT
CGAGAAACAGGAAAAACATGATTTACAACAGACAGCAAGAGATGTCTCAC
TTTGTATACGCTATCTTAATCTTTTCACGTGTTGCCTGACGCTTGTTCTC
ATCTTCTGGCTGGTTTAAATTTCTTGATCATGATCTATATGATGAATTTA
ATCGCATCCAAATTGAGAGCTGACAAAAGACCTGGCGTCATCAAAGCCAA
GTTGTTGGAGCCGATATTATTGGAACAAATATCGATGGGCGTTGAATTCT
ATTGTCATTATTGTCCTTTGTTTGTGGCAGCATTGATTGTATTCGGTGTA
TTTTTGCCAGGAATGTATTATGATACAGATACTGAATACAACACTGTTCA
CGAATGTTCATTCTGTCCACTTATTTCCACGTGGCAGTTCTTCTGGTGAT
GTTTAGTGAAGGCTTCTATCAATTCCGTCAATTCTATTTCATCATTGTGA
CAAAACATAGAGAACCTTATTACATTGTTTTCTCTTATGTCCTTTATCCG
AGAAACGTTTCATCCTTCATCGATTTTTGATTTTGGGTTTGGCATTGCAC
GATGTCTTCTTCATTCTTCAAAGTCGATACATATTCGATCTCGAGAAACA
GGAAAAACATGATTTACAACAGACAGCAAGAGATGTCTCACTTTGTATAC
GCTATCTTAATCTTTTCACGTGTTGCCTGACGCTTGTTCTCATCTTCTGG
CTGGTTTAAATTTCTTGATCATGATCTATATGATGAATTTAATCGCATCC
AAATTGAGAGCTGACAAAAGACCTGGCGTCATCAAAGCCAAGTTGTTGGA
GCCGATATTATTGGAACAAATATCGATGGGCGTTGAATTCTATTGTCATT
ATTGTCCTTTGTTTGTGGCAGCATTGATTGTATTCGGTGTATTTTTGCCA
GGAATGTATTATGATACAGATACTGAATACAACACTGTTCACGAATGTTC
ATTCTGTCCACTTATTTCCACGTGGCAGTTCTTCTGGTGATGTTTAGTGA
AGGCTTCTATCAATTCCGTCAATTCTATTTCATCATTGTGACAAAACATA
GAGAACCTTATTACATTGTTTTCTCTTATGTCCTTTATCCGAGAAACGTT
TCATCCTTCATCGATTTTTGATTTTGGGTTTGGCATTGCACGATGTCTTC
TTCATTCTTCAAAGTCGATACATATTCGATCTCGAGAAACAGGAAAAACA
TGATTTACAACAGACAGCAAGAGATGTCTCACTTTGTATACGCTATCTTA
ATCTTTTCACGTGTTGCCTGACGCTTGTTCTCATCTTCTGGCTGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041857XLOC_041857Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067003-proteinTCONS_00067003-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067003-exon-scaffold_462-1575043694:782277..782380TCONS_00067003-exon-scaffold_462-1575043694:782277..782380Clytia hemisphaericaexon
TCONS_00067003-exon-scaffold_462-1575043694:781864..781975TCONS_00067003-exon-scaffold_462-1575043694:781864..781975Clytia hemisphaericaexon
TCONS_00067003-exon-scaffold_462-1575043694:781325..781475TCONS_00067003-exon-scaffold_462-1575043694:781325..781475Clytia hemisphaericaexon
TCONS_00067003-exon-scaffold_462-1575043694:780861..780927TCONS_00067003-exon-scaffold_462-1575043694:780861..780927Clytia hemisphaericaexon
TCONS_00067003-exon-scaffold_462-1575043694:780442..780511TCONS_00067003-exon-scaffold_462-1575043694:780442..780511Clytia hemisphaericaexon
TCONS_00067003-exon-scaffold_462-1575043694:780110..780197TCONS_00067003-exon-scaffold_462-1575043694:780110..780197Clytia hemisphaericaexon
TCONS_00067003-exon-scaffold_462-1510915933:782277..782380TCONS_00067003-exon-scaffold_462-1510915933:782277..782380Clytia hemisphaericaexon
TCONS_00067003-exon-scaffold_462-1510915933:781864..781975TCONS_00067003-exon-scaffold_462-1510915933:781864..781975Clytia hemisphaericaexon
TCONS_00067003-exon-scaffold_462-1510915933:781325..781475TCONS_00067003-exon-scaffold_462-1510915933:781325..781475Clytia hemisphaericaexon
TCONS_00067003-exon-scaffold_462-1510915933:780861..780927TCONS_00067003-exon-scaffold_462-1510915933:780861..780927Clytia hemisphaericaexon
TCONS_00067003-exon-scaffold_462-1510915933:780442..780511TCONS_00067003-exon-scaffold_462-1510915933:780442..780511Clytia hemisphaericaexon
TCONS_00067003-exon-scaffold_462-1510915933:780110..780197TCONS_00067003-exon-scaffold_462-1510915933:780110..780197Clytia hemisphaericaexon
TCONS_00067003-exon-scaffold_462-1491911889:782277..782380TCONS_00067003-exon-scaffold_462-1491911889:782277..782380Clytia hemisphaericaexon
TCONS_00067003-exon-scaffold_462-1491911889:781864..781975TCONS_00067003-exon-scaffold_462-1491911889:781864..781975Clytia hemisphaericaexon
TCONS_00067003-exon-scaffold_462-1491911889:781325..781475TCONS_00067003-exon-scaffold_462-1491911889:781325..781475Clytia hemisphaericaexon
TCONS_00067003-exon-scaffold_462-1491911889:780861..780927TCONS_00067003-exon-scaffold_462-1491911889:780861..780927Clytia hemisphaericaexon
TCONS_00067003-exon-scaffold_462-1491911889:780442..780511TCONS_00067003-exon-scaffold_462-1491911889:780442..780511Clytia hemisphaericaexon
TCONS_00067003-exon-scaffold_462-1491911889:780110..780197TCONS_00067003-exon-scaffold_462-1491911889:780110..780197Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_462supercontigscaffold_462:780110..782380 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.18066	0.839054	0.513052	0	0.0987121	0	0	0	0.0966881	0	0	0	0.255914	4.98342	0.564468	0	0	0	0	0.358244	0	0	0	0	0	0	0	0.205627	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000832GPCR_2_secretin-like
IPR017981GPCR_2-like
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
GO:0004888transmembrane signaling receptor activity
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
GO:0007166cell surface receptor signaling pathway
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007166 cell surface receptor signaling pathway
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
molecular_function GO:0004888 transmembrane signaling receptor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067003 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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