TCONS_00067010 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067010
Unique NameTCONS_00067010
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2408

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067010 ID=TCONS_00067010|Name=TCONS_00067010|organism=Clytia hemisphaerica|type=transcript|length=2408bp
tgaaaatcatttgctgtatcaaaattttgacgaaaatcttttatttttga
atacaattttatcgttttgttttgatttttaagagAATTGACATTTAATC
GGAGAAAAGGGAGCATATACATTTTCCAGCATGAAAGCTCTTCACGTGGG
AGTGATGTTACTCCTACTTGTGGCTTTGATCGATTGTCGGGCTATCAAAA
AAGGGAAAGATCACAAAAAGTCTTCAAAGTTATCACATCATGCTCGTAAA
TTTGCTACCGAAGCCTCGAAAAGTATTTATCAGCATGCGCTAGACGAAAC
TAAAAAAGACTTGGGAGAGGCGATAGATAGTGCAGTTCAAGCATATACTG
AACAGACTATTGGAGgtCATAAAGGCAAAAAGAAAGAAGTCACGCCAGAT
ACATCTTCAGAGGACCAAAGTAAACGACATGTCCAAAGTTATAATGATCC
TTTAGCTGAGCAAAACCCTGATGAAGATGAAGCTCATCCAATGCCACAAC
CAGGCCATGTTCCACAAAACTTAAATGGGATTATCCAAAAATATAAACCA
AAGAAAGTTCAAGAtgataagaaaaacaaaaacaaaaacaaacaagacAA
TAAGCAGTCATATGCTGCAGGAACTTCCGATTCAGAAAATTCAGAGGAAG
CACCTGATGAAGCTGAGGCACCACCACCAGGAGGTGCCCCACCCGCAGGT
GGTAACCCACCACCTCCAGGAGGTGCTCAGCCACCTCCTGCTGGAGGGCA
GCCCACAACTACTCCAGCACCACCTCCTGCTGGTGATGATGATGACAGTG
ATGATAGCGATGATGATGCTCAGCCACCTGAACAAAAACCAGCCCCAGGA
GGCGGCTCTCCTCCTCCTCCAGGTGGTGCTCCTCCACCACCAGGAGGTGC
CCCACCCCCTCCAGGCGGTGCCCCTCCACCACCAGGTGGTGTCCCACCCC
CTCCAGGTGGTGCTCCCCCACCACCAGCAGGAAAGAAACCACCAACAGAA
GCCAAATCTGACGGAGATGATCAAGAAGATTTGAAAGCCTTACTAGATGA
AAGTATTGGAAACTTAGTCAAAGCAAATCAAGCTGTAGAAACACTCTTAT
CTGCCAGCAGTGGAGGTTTACCACTGCCTCCACTATCACCATTTCCATGC
AGTACTTGTACTATAATATGTTTACCTGGCTGTGATACAACTTGTTGTCA
TGGGGgtaacaagaaaaataaaactttcaatGCTAAACTACATCATCGTA
AAAAGACACGGCATCATGATAGAAAATCTCATAAAGGATATATTTCCGAT
GATGATAAAAGACATAACGATAATAACAATATGGTTGCCCCTACCATGCC
TTCATTGCCTTTATCCAGATTTGTAGTGGCCCCAACAATGCCTGCACCAC
CGACTGTATGTTGTGACAAAGACCATCCTGTAATCTTGAACTGTGATATC
CCACCATGCCAACCGACCAATTGCATCTATTGTTATAATCCTGGTTCACC
GGTCGTCGGGAATAGCCTAATTATACCGAATGCAGGCTGAAAGAGGATAA
TTTGTACATGGGATATTTACGTAGAGGAGCTGATGTATATTCATGTATAA
CTAACATTATAACTGATGCATGTCCATCATATCCAACCTTATGTCGTCAT
GGAGACGAACCGTTCGTTCTGAGCATGCGCACATGAACGTGAATTGTGAC
TCTATGGATAACTATCTACGGATGAACTAACTACAACATAATTATCGTAT
ATCATAGTTTTGTTATCGAATCTTTTGCTAAATGGCCAGTTAGTTCTATA
GTTGGCGCATATATTACTTTTAAGCAAAGTAGGGCCTAGTTGGTGACATA
AAGGCTTTTCTTTAGAACACGTTGACtacacagatatctgtaaagcccga
agggctagataggcaactttaagctttctccacagcaaaaaaaagtgaag
caaaaatttgactttttaaatttcgtgccgatggataggatctagcattt
taattgtttttggagcgcgagatcaaaaaagtaggcggcaaacgctattt
cacatctctcaaaccggtggaATTGCATATTTTactcacgtgactttggt
aggaaatccttccaaatctaggcttcacttttcgataaaagctgcgaatc
tagcccttcgggctttacagatctgtggttgACTActgattttttattga
aaaattgacaaGAAATCTTTAAGAACAAGCTTTGTACTTAAGGAAAGCCT
TCTAGTTAAAGACTTTGCTCAGCGAAAATTTAGTATAGTTTTGTTACTAG
ATAATGACACTTTTAGGACAATTTTCATATTTATAAAAGATACAAATATA
AGGCATTTACACTTATGtcttgaatgaaaatttaacataatttttggata
aaatattc
Run BLAST on NCBI

transcript from alignment at scaffold_462:878768..884829-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067010 ID=TCONS_00067010|Name=TCONS_00067010|organism=Clytia hemisphaerica|type=transcript|length=6062bp|location=Sequence derived from alignment at scaffold_462:878768..884829- (Clytia hemisphaerica)
TGAAAATCATTTGCTGTATCAAAATTTTGACGAAAATCTTTTATTTTTGA
ATACAATTTTATCGTTTTGTTTTGATTTTTAAGAGAATTGACATTTAATC
GGAGAAAAGGGAGCATATACATTTTCCAGGTGAGTAAACCATTTACTACC
AATTTGATAGATTTTGTTCTTTTGATAAATTGGACTCGTATTTTAATCAT
TATTTGGCTTTGCTTGATTGAAAAAGTGATTTTTTCAGGAGCATCTTAAG
AAATATTATTGCAATCGTTAAAAGATAATGATATGTTTTGTTTGTTTAAT
GATATTTTGAATTGGATATTTGCTATTGAGCACCTGGCTGACTGCTTTCT
CGCTATTCAAATTGTTACAAATTAAAAAAAGAATCATTAGAAACCCCATA
ACTCGAACACGCAACCTAAATATTTTATTTGAGTGATACACGGTGAATCT
ACCATTGAGTTTAAAGCCCCGAAGAAATTAAAATTGAAACTTTTGGATGG
GAAATGAAGTCACTTAGTGTCTATCTGAAACGTGTAACCTGCGTGGTTTT
CACATAAACGCCAGAGTGAAAGAAATATTCATCGCTAGATTTCGAAAAAT
ACGCCACGTGAAAACAAAGAAAGCACTAGATTCAATCCGTTATTCTGAAT
ACGCAAATCTTTAATGCTTTACTTTTTCTTGCTTGAGAAGGGCTGAAGAT
TTTTCTTAGAGCCCTTTGAGCCTTAAACTCAATGTACCCATTGTACTCTG
TCACATATTCTTGTCGCTATTAAATTTTAATTGTCTTTCTTTCTTTTCAT
TCAGCATGAAAGCTCTTCACGTGGGAGTGATGTTACTCCTACTTGTGGCT
TTGATCGATTGTCGGGCTATCAAAAAAGGTATACTTTTATTCAATGTTTT
TTACCTAGCTAAGGAATCTTCCTGAATTTTCAATGCAATGAAAGTAGAAA
GAGCATCCCTTCTCGGTTACCTTTTCATGTTGTAATGATCCTTCTTTGTT
ATGTTTTTCGCTAAATTCGTCTTCACTGTCGATGCATAAAATTTCATTTA
CCTTATGGGGAGGAAAATAGTCATGATTTATCTATTTATTTCGGTCTCGA
TTATTTGGCCCCGATTCTTTGGCGCCTTTTCATAAATTATCTTGAGTGCA
ACGACTGCCTCGTTTTGAAACCATTGTCAAGGTGACTAAATTCCTTGGGT
CTTCGAGTGCTACTTTCTATAAGTAGAGTAAACTTCTTATGAACTCCTCT
GGGAATCAATTACCACAGTAATATTTTGAAAACGAGGAGTTGCTAGTGAC
GTAATTTATGGAAAGGTTTTATAAAAGTAAATATTTTCTGTGTTTGCATG
ATTTTAAGACAAATTCTACAGCTTGATTTTGTTTTGGCTAGGTGTTATTT
TCTTCTCTCCTAATACTGTATATGATTATATGTACGGCCTTGCCCCCCAT
TCTTTGCTTACAATATATGCACGACCTAATCATCCAAGTTAAAACTGCAA
TGCATGAGACAGTATCAAATTAAAATAGTCTAGAGTAATCTTAGACCAAT
TCTAGTCAGGCGTGATGTGTGAACTTAAGGGATTTTTCGAAATAAAGAAT
AAAGCAATTTCGGAACAAATTTTGAAAAAAAACTTTTTTGAAATTTTTGA
ATAATTCCCTTTACTTTTTTAGGGAAAGATCACAAAAAGTCTTCAAAGTT
ATCACATCATGCTCGTAAATTTGCTACCGAAGCCTCGAAAAGTATTTATC
AGCATGCGCTAGACGAAACTAAAAAAGACTTGGGAGAGGCGATAGATAGT
GCAGTTCAAGCATATACTGAACAGACTATTGGAGGTAGGATACATACAAG
GCTAACAAAGTGAACTTCGCCATATTTTAGAATACCTGCGACTCACAACC
CCAACCCCCCGGTCACGAGTCCCTGATGTAACTCACTGGAAATAAATGGA
ACCTTTTCCCAATTATTACAATAGATAACATCCTGTTCAAAGAATGAATG
TTCTATCCCATTTCATAATGTGCTTCTCATTGTAAATCCACTCTCCATAC
ATTTAACGAGATGTACATACCCCTAGACTCGTCATTTTTGAGCATTTTCA
CAAAGACAATTTTTACATAGAGATGACCTAGAATAGATTTGCATGTCTTA
CAACAACAACAACACATCTACTGTAGAAAAATGCCAAAAATAACTTGTAT
CGCGCATGTATCGTCATTTAACCAAACGCATTATAAACAGGATTTAGCTG
AACAATCTAAAAAAGCAAACACTTTCTTACACCATCAACTCCATTATTCG
ACCAAACTTCTTCATTTTTCAAAGGTCATAAAGGCAAAAAGAAAGAAGTC
ACGCCAGATACATCTTCAGAGGACCAAAGTAAACGACATGTCCAAAGTTA
TAATGATCCTTTAGCTGAGCAAAACCCTGATGAAGATGAAGCTCATCCAA
TGCCACAACCAGGCCATGTTCCACAAAACTTAAATGGGATTATCCAAAAA
TATAAACCAAAGAAAGTTCAAGATGATAAGAAAAACAAAAACAAAAACAA
ACAAGACAATAAGCAGTCATATGCTGCAGGAACTTGTAAGTTAATAAAAT
TCCTTTCCTTCAGCAGTGTAACCCTTTCATAAATTTAAGTTTGGTTAAAC
CCTTCTTAAACTAATTTTTCAAGATTGTGCTTTTCTCAGATGCTTTTTTA
TACTTTGAGATAGTTCTGTTAGTTTTAAACTTCGTAGATTAAAGTGTTAC
GATTGATGAAATTGAGATTCAGTGTAGTTTTGACATCTTTCATTCCCTTT
AGCCGATTCAGAAAATTCAGAGGAAGCACCTGATGAAGCTGAGGCACCAC
CACCAGGAGGTGCCCCACCCGCAGGTGGTAACCCACCACCTCCAGGAGGT
GCTCAGCCACCTCCTGCTGGAGGGCAGCCCACAACTACTCCAGCACCACC
TCCTGCTGGTGATGATGATGACAGTGATGATAGCGATGATGATGCTCAGC
CACCTGAACAAAAACCAGCCCCAGGAGGCGGCTCTCCTCCTCCTCCAGGT
GGTGCTCCTCCACCACCAGGAGGTGCCCCACCCCCTCCAGGCGGTGCCCC
TCCACCACCAGGTGGTGTCCCACCCCCTCCAGGTGGTGCTCCCCCACCAC
CAGCAGGAAAGAAACCACCAACAGAAGCCAAATCTGACGGAGATGATCAA
GAAGATTTGAAAGCCTTACTAGATGAAAGTATTGGTAAGATGTCCAGCCA
TTCACAACGAATTCTAAAATAAAGACTGGAATGGAAAAGGAAACGATCTA
GAACGTTGAAGATCCGAAAAACCGGATTTTCTTCAAGGTTGAAGAGATTC
TTTCAGATGTCAAATAATGGCTGCTGCAGATATGGAAATTTGGAAACCTC
GTTAAAAAATCAGATTCCCAATTCCAGTCTTAATTTTGGAGTTCGTTGAT
CAAATCAGTTAAATCTAAAAGTTATTCAAAAATAAAATCTCGATGCATCA
AAAGCTAATAGATTCTAATTAGTCACTTTTGAGTATCACTTCAATATTCA
AATAGGTCAAAAAACCTCCTTTTCTTTCTTTTCATCTATTTAGGAAACTT
AGTCAAAGCAAATCAAGCTGTAGAAACACTCTTATCTGCCAGCAGTGGAG
GTAAGAGCTTTTTACCGTTTTCTTCTCATGCCAATACTGCACCCACTAAA
CCAGGAATTTCCTCATCTTATCTTTGTAATTATTTTTACTTTTAGGATCA
TCTAGTGGACCCTCTCCATCTGGAGGTGCTCCCCCACCCGGTGGTGCTCC
TCCTCCTCCAGGCGGTGCCCCTCCACCCCCAGGTGGCGTTCCTCCTCCAG
GCGGTGCCCCTCCTCCAGGCGGTGCTCCTCCTCCAGGCGGTGCCCCTCCT
CCAGGTGGTGCCCCTCCACCCCCAGGTGGTGCCCCTCCACCCCCAGGCGG
TGCCCCTCCTCCAGGCGGTGCCCCTCCACCAGGTGGTGCTCCTCCTCCAG
GCGGTGCCCCTCCACCACCAGGTGGCGCCCCTCCCACTGAGGCTAAACCA
GATGAGGCTGCTGGTGCTCCTCCCCCTCCTGGTGGTGCCGGTGGCGCTCC
TGGAGCAGCAGGTGGCAAAGGTGGAGACTGCACTGGTTGCGAAAACCCAT
ACTGCTGTGCCGAACCCTTTGGAGCTAGCTCAACTGTCATTCATTTCCCA
GCACCGCCATGTGCATGTGCTCCCCCACCACCACCTTGTATGGCAATGCC
ATGTCCACCACCCCCTCCTCCATGCCCTNNNNNNNNNNNNNNNNNNNNNA
CCATGTCCTGCACCTTGTCCAGTAGCATGTGCACCTCCACCACCACCACC
TTGTGCACCAGCCTGTATGCCCCCAGCTTGTGGACCAACCTGCAGTCGCG
ATTGTTGTGAGTGGGATCAAGTCGTACCATCAGGTGCATTGGCAGGGGCC
CTCGCTAACTATGCTAAAGATCATGGCAAATAAATTGGACGAAACAGACA
TTCTTTAATATTCCTATCCTAAACACAATGTACATTAATATTTTCCTTTC
ACACTTGCATGTTTATATTTTATGACAAAGTTTTTTTTCTGTTTATAATT
TGACCGAAATGAATAATTTTAGAGACGAAACCAAAAAAGGTTAATGGTGA
TAGTGGGTGCAGTGGTGTGTTTTCTACTTTCGTATAATTTGTCTATGATC
GCTAACTGAATCACAATGACACACAAACACACACGCTTAAACCAAGCAAA
TGTTTATTTTGTCATTTAGGTTTACCACTGCCTCCACTATCACCATTTCC
ATGCAGTACTTGTACTATAATATGTTTACCTGGCTGTGATACAACTTGTT
GTCATGGGGGTAACAAGAAAAATAAAACTTTCAATGCTAAACTACATCAT
CGTAAAAAGACACGGCATCATGATAGAAAATCTCATAAAGGATATATTTC
CGATGATGATAAAAGACATAACGATAATAACAATATGGTTGCCCCTACCA
TGCCTTCATTGCCTTTATCCAGATTTGTAGTGGCCCCAACAATGCCTGCA
CCACCGACTGTATGTTGTGACAAAGACCATCCTGTAATCTTGAACTGTGA
TATCCCACCATGCCAACCGACCAATTGCATCTATTGTTATAATCCTGGTT
CACCGGTCGTCGGGAATAGCCTAATTATACCGAATGCAGGCTGAAAGAGG
ATAATTTGTACATGGGATATTTACGTAGAGGAGCTGATGTATATTCATGT
ATAACTAACATTATAACTGATGCATGTCCATCATATCCAACCTTATGTCG
TCATGGAGACGAACCGTTCGTTCTGAGCATGCGCACATGAACGTGAATTG
TGACTCTATGGATAACTATCTACGGATGAACTAACTACAACATAATTATC
GTATATCATAGTTTTGTTATCGAATCTTTTGCTAAATGGCCAGTTAGTTC
TATAGTTGGCGCATATATTACTTTTAAGCAAAGTAGGGCCTAGTTGGTGA
CATAAAGGCTTTTCTTTAGAACACGTTGACTACACAGATATCTGTAAAGC
CCGAAGGGCTAGATAGGCAACTTTAAGCTTTCTCCACAGCAAAAAAAAGT
GAAGCAAAAATTTGACTTTTTAAATTTCGTGCCGATGGATAGGATCTAGC
ATTTTAATTGTTTTTGGAGCGCGAGATCAAAAAAGTAGGCGGCAAACGCT
ATTTCACATCTCTCAAACCGGTGGAATTGCATATTTTACTCACGTGACTT
TGGTAGGAAATCCTTCCAAATCTAGGCTTCACTTTTCGATAAAAGCTGCG
AATCTAGCCCTTCGGGCTTTACAGATCTGTGGTTGACTACTGATTTTTTA
TTGAAAAATTGACAAGAAATCTTTAAGAACAAGCTTTGTACTTAAGGAAA
GCCTTCTAGTTAAAGACTTTGCTCAGCGAAAATTTAGTATAGTTTTGTTA
CTAGATAATGACACTTTTAGGACAATTTTCATATTTATAAAAGATACAAA
TATAAGGCATTTACACTTATGTCTTGAATGAAAATTTAACATAATTTTTG
GATAAAATATTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041859XLOC_041859Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067010-exon-scaffold_462-1575043694:884701..884829TCONS_00067010-exon-scaffold_462-1575043694:884701..884829Clytia hemisphaericaexon
TCONS_00067010-exon-scaffold_462-1575043694:883952..884025TCONS_00067010-exon-scaffold_462-1575043694:883952..884025Clytia hemisphaericaexon
TCONS_00067010-exon-scaffold_462-1575043694:882996..883157TCONS_00067010-exon-scaffold_462-1575043694:882996..883157Clytia hemisphaericaexon
TCONS_00067010-exon-scaffold_462-1575043694:882245..882505TCONS_00067010-exon-scaffold_462-1575043694:882245..882505Clytia hemisphaericaexon
TCONS_00067010-exon-scaffold_462-1575043694:881596..882027TCONS_00067010-exon-scaffold_462-1575043694:881596..882027Clytia hemisphaericaexon
TCONS_00067010-exon-scaffold_462-1575043694:881180..881236TCONS_00067010-exon-scaffold_462-1575043694:881180..881236Clytia hemisphaericaexon
TCONS_00067010-exon-scaffold_462-1575043694:878768..880060TCONS_00067010-exon-scaffold_462-1575043694:878768..880060Clytia hemisphaericaexon
TCONS_00067010-exon-scaffold_462-1510915933:884701..884829TCONS_00067010-exon-scaffold_462-1510915933:884701..884829Clytia hemisphaericaexon
TCONS_00067010-exon-scaffold_462-1510915933:883952..884025TCONS_00067010-exon-scaffold_462-1510915933:883952..884025Clytia hemisphaericaexon
TCONS_00067010-exon-scaffold_462-1510915933:882996..883157TCONS_00067010-exon-scaffold_462-1510915933:882996..883157Clytia hemisphaericaexon
TCONS_00067010-exon-scaffold_462-1510915933:882245..882505TCONS_00067010-exon-scaffold_462-1510915933:882245..882505Clytia hemisphaericaexon
TCONS_00067010-exon-scaffold_462-1510915933:881596..882027TCONS_00067010-exon-scaffold_462-1510915933:881596..882027Clytia hemisphaericaexon
TCONS_00067010-exon-scaffold_462-1510915933:881180..881236TCONS_00067010-exon-scaffold_462-1510915933:881180..881236Clytia hemisphaericaexon
TCONS_00067010-exon-scaffold_462-1510915933:878768..880060TCONS_00067010-exon-scaffold_462-1510915933:878768..880060Clytia hemisphaericaexon
TCONS_00067010-exon-scaffold_462-1491911889:884701..884829TCONS_00067010-exon-scaffold_462-1491911889:884701..884829Clytia hemisphaericaexon
TCONS_00067010-exon-scaffold_462-1491911889:883952..884025TCONS_00067010-exon-scaffold_462-1491911889:883952..884025Clytia hemisphaericaexon
TCONS_00067010-exon-scaffold_462-1491911889:882996..883157TCONS_00067010-exon-scaffold_462-1491911889:882996..883157Clytia hemisphaericaexon
TCONS_00067010-exon-scaffold_462-1491911889:882245..882505TCONS_00067010-exon-scaffold_462-1491911889:882245..882505Clytia hemisphaericaexon
TCONS_00067010-exon-scaffold_462-1491911889:881596..882027TCONS_00067010-exon-scaffold_462-1491911889:881596..882027Clytia hemisphaericaexon
TCONS_00067010-exon-scaffold_462-1491911889:881180..881236TCONS_00067010-exon-scaffold_462-1491911889:881180..881236Clytia hemisphaericaexon
TCONS_00067010-exon-scaffold_462-1491911889:878768..880060TCONS_00067010-exon-scaffold_462-1491911889:878768..880060Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_462supercontigscaffold_462:878768..884829 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.102398	0	0.00266577	0.330435	8.58726e-09	4.86538e-05	0	3.16305e-10	0.150814	0	1.39582	0.00102499	0	0	0	0	0	0	0	0.190919	0	0	0	0	0	0	0	4.71976e-10	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067010 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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