TCONS_00067015 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067015
Unique NameTCONS_00067015
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length908

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067015 ID=TCONS_00067015|Name=TCONS_00067015|organism=Clytia hemisphaerica|type=transcript|length=908bp
tttgttttgatttttaagagAATTGACATTTAATCGGAGAAAAGGGAGCA
TATACATTTTCCAGCATGAAAGCTCTTCACGTGGGAGTGATGTTACTCCT
ACTTGTGGCTTTGATCGATTGTCGGGCTATCAAAAAAGgtCATAAAGGCA
AAAAGAAAGAAGTCACGCCAGATACATCTTCAGAGGACCAAAGTAAACGA
CATGTCCAAAGTTATAATGATCCTTTAGCTGAGCAAAACCCTGATGAAGA
TGAAGCTCATCCAATGCCACAACCAGGCCATGTTCCACAAAACTTAAATG
GGATTATCCAAAAATATAAACCAAAGAAAGTTCAAGAtgataagaaaaac
aaaaacaaaaacaaacaagacAATAAGCAGTCATATGCTGCAGGAACTTC
CGATTCAGAAAATTCAGAGGAAGCACCTGATGAAGCTGAGGCACCACCAC
CAGGAGGTGCCCCACCCGCAGGTGGTAACCCACCACCTCCAGGAGGTGCT
CAGCCACCTCCTGCTGGAGGGCAGCCCACAACTACTCCAGCACCACCTCC
TGCTGGTGATGATGATGACAGTGATGATAGCGATGATGATGCTCAGCCAC
CTGAACAAAAACCAGCCCCAGGAGGCGGCTCTCCTCCTCCTCCAGGTGGT
GCTCCTCCACCACCAGGAGGTGCCCCACCCCCTCCAGGCGGTGCCCCTCC
ACCACCAGGTGGTGTCCCACCCCCTCCAGGTGGTGCTCCCCCACCACCAG
CAGGAAAGAAACCACCAACAGAAGCCAAATCTGACGGAGATGATCAAGAA
GATTTGAAAGCCTTACTAGATGAAAGTATTGgaTCATCTAGTGGACCCTC
TCCATCTGGAGGTGCTCCCCCACCCGGCGGTGCTCCTCCTCCAGGCGGTG
CCCCTCCT
Run BLAST on NCBI

transcript from alignment at scaffold_462:880930..884764-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067015 ID=TCONS_00067015|Name=TCONS_00067015|organism=Clytia hemisphaerica|type=transcript|length=3835bp|location=Sequence derived from alignment at scaffold_462:880930..884764- (Clytia hemisphaerica)
TTTGTTTTGATTTTTAAGAGAATTGACATTTAATCGGAGAAAAGGGAGCA
TATACATTTTCCAGGTGAGTAAACCATTTACTACCAATTTGATAGATTTT
GTTCTTTTGATAAATTGGACTCGTATTTTAATCATTATTTGGCTTTGCTT
GATTGAAAAAGTGATTTTTTCAGGAGCATCTTAAGAAATATTATTGCAAT
CGTTAAAAGATAATGATATGTTTTGTTTGTTTAATGATATTTTGAATTGG
ATATTTGCTATTGAGCACCTGGCTGACTGCTTTCTCGCTATTCAAATTGT
TACAAATTAAAAAAAGAATCATTAGAAACCCCATAACTCGAACACGCAAC
CTAAATATTTTATTTGAGTGATACACGGTGAATCTACCATTGAGTTTAAA
GCCCCGAAGAAATTAAAATTGAAACTTTTGGATGGGAAATGAAGTCACTT
AGTGTCTATCTGAAACGTGTAACCTGCGTGGTTTTCACATAAACGCCAGA
GTGAAAGAAATATTCATCGCTAGATTTCGAAAAATACGCCACGTGAAAAC
AAAGAAAGCACTAGATTCAATCCGTTATTCTGAATACGCAAATCTTTAAT
GCTTTACTTTTTCTTGCTTGAGAAGGGCTGAAGATTTTTCTTAGAGCCCT
TTGAGCCTTAAACTCAATGTACCCATTGTACTCTGTCACATATTCTTGTC
GCTATTAAATTTTAATTGTCTTTCTTTCTTTTCATTCAGCATGAAAGCTC
TTCACGTGGGAGTGATGTTACTCCTACTTGTGGCTTTGATCGATTGTCGG
GCTATCAAAAAAGGTATACTTTTATTCAATGTTTTTTACCTAGCTAAGGA
ATCTTCCTGAATTTTCAATGCAATGAAAGTAGAAAGAGCATCCCTTCTCG
GTTACCTTTTCATGTTGTAATGATCCTTCTTTGTTATGTTTTTCGCTAAA
TTCGTCTTCACTGTCGATGCATAAAATTTCATTTACCTTATGGGGAGGAA
AATAGTCATGATTTATCTATTTATTTCGGTCTCGATTATTTGGCCCCGAT
TCTTTGGCGCCTTTTCATAAATTATCTTGAGTGCAACGACTGCCTCGTTT
TGAAACCATTGTCAAGGTGACTAAATTCCTTGGGTCTTCGAGTGCTACTT
TCTATAAGTAGAGTAAACTTCTTATGAACTCCTCTGGGAATCAATTACCA
CAGTAATATTTTGAAAACGAGGAGTTGCTAGTGACGTAATTTATGGAAAG
GTTTTATAAAAGTAAATATTTTCTGTGTTTGCATGATTTTAAGACAAATT
CTACAGCTTGATTTTGTTTTGGCTAGGTGTTATTTTCTTCTCTCCTAATA
CTGTATATGATTATATGTACGGCCTTGCCCCCCATTCTTTGCTTACAATA
TATGCACGACCTAATCATCCAAGTTAAAACTGCAATGCATGAGACAGTAT
CAAATTAAAATAGTCTAGAGTAATCTTAGACCAATTCTAGTCAGGCGTGA
TGTGTGAACTTAAGGGATTTTTCGAAATAAAGAATAAAGCAATTTCGGAA
CAAATTTTGAAAAAAAACTTTTTTGAAATTTTTGAATAATTCCCTTTACT
TTTTTAGGGAAAGATCACAAAAAGTCTTCAAAGTTATCACATCATGCTCG
TAAATTTGCTACCGAAGCCTCGAAAAGTATTTATCAGCATGCGCTAGACG
AAACTAAAAAAGACTTGGGAGAGGCGATAGATAGTGCAGTTCAAGCATAT
ACTGAACAGACTATTGGAGGTAGGATACATACAAGGCTAACAAAGTGAAC
TTCGCCATATTTTAGAATACCTGCGACTCACAACCCCAACCCCCCGGTCA
CGAGTCCCTGATGTAACTCACTGGAAATAAATGGAACCTTTTCCCAATTA
TTACAATAGATAACATCCTGTTCAAAGAATGAATGTTCTATCCCATTTCA
TAATGTGCTTCTCATTGTAAATCCACTCTCCATACATTTAACGAGATGTA
CATACCCCTAGACTCGTCATTTTTGAGCATTTTCACAAAGACAATTTTTA
CATAGAGATGACCTAGAATAGATTTGCATGTCTTACAACAACAACAACAC
ATCTACTGTAGAAAAATGCCAAAAATAACTTGTATCGCGCATGTATCGTC
ATTTAACCAAACGCATTATAAACAGGATTTAGCTGAACAATCTAAAAAAG
CAAACACTTTCTTACACCATCAACTCCATTATTCGACCAAACTTCTTCAT
TTTTCAAAGGTCATAAAGGCAAAAAGAAAGAAGTCACGCCAGATACATCT
TCAGAGGACCAAAGTAAACGACATGTCCAAAGTTATAATGATCCTTTAGC
TGAGCAAAACCCTGATGAAGATGAAGCTCATCCAATGCCACAACCAGGCC
ATGTTCCACAAAACTTAAATGGGATTATCCAAAAATATAAACCAAAGAAA
GTTCAAGATGATAAGAAAAACAAAAACAAAAACAAACAAGACAATAAGCA
GTCATATGCTGCAGGAACTTGTAAGTTAATAAAATTCCTTTCCTTCAGCA
GTGTAACCCTTTCATAAATTTAAGTTTGGTTAAACCCTTCTTAAACTAAT
TTTTCAAGATTGTGCTTTTCTCAGATGCTTTTTTATACTTTGAGATAGTT
CTGTTAGTTTTAAACTTCGTAGATTAAAGTGTTACGATTGATGAAATTGA
GATTCAGTGTAGTTTTGACATCTTTCATTCCCTTTAGCCGATTCAGAAAA
TTCAGAGGAAGCACCTGATGAAGCTGAGGCACCACCACCAGGAGGTGCCC
CACCCGCAGGTGGTAACCCACCACCTCCAGGAGGTGCTCAGCCACCTCCT
GCTGGAGGGCAGCCCACAACTACTCCAGCACCACCTCCTGCTGGTGATGA
TGATGACAGTGATGATAGCGATGATGATGCTCAGCCACCTGAACAAAAAC
CAGCCCCAGGAGGCGGCTCTCCTCCTCCTCCAGGTGGTGCTCCTCCACCA
CCAGGAGGTGCCCCACCCCCTCCAGGCGGTGCCCCTCCACCACCAGGTGG
TGTCCCACCCCCTCCAGGTGGTGCTCCCCCACCACCAGCAGGAAAGAAAC
CACCAACAGAAGCCAAATCTGACGGAGATGATCAAGAAGATTTGAAAGCC
TTACTAGATGAAAGTATTGGTAAGATGTCCAGCCATTCACAACGAATTCT
AAAATAAAGACTGGAATGGAAAAGGAAACGATCTAGAACGTTGAAGATCC
GAAAAACCGGATTTTCTTCAAGGTTGAAGAGATTCTTTCAGATGTCAAAT
AATGGCTGCTGCAGATATGGAAATTTGGAAACCTCGTTAAAAAATCAGAT
TCCCAATTCCAGTCTTAATTTTGGAGTTCGTTGATCAAATCAGTTAAATC
TAAAAGTTATTCAAAAATAAAATCTCGATGCATCAAAAGCTAATAGATTC
TAATTAGTCACTTTTGAGTATCACTTCAATATTCAAATAGGTCAAAAAAC
CTCCTTTTCTTTCTTTTCATCTATTTAGGAAACTTAGTCAAAGCAAATCA
AGCTGTAGAAACACTCTTATCTGCCAGCAGTGGAGGTAAGAGCTTTTTAC
CGTTTTCTTCTCATGCCAATACTGCACCCACTAAACCAGGAATTTCCTCA
TCTTATCTTTGTAATTATTTTTACTTTTAGGATCATCTAGTGGACCCTCT
CCATCTGGAGGTGCTCCCCCACCCGGTGGTGCTCCTCCTCCTCCAGGCGG
TGCCCCTCCACCCCCAGGTGGCGTTCCTCCTCCAGGCGGTGCCCCTCCTC
CAGGCGGTGCTCCTCCTCCAGGCGGTGCCCCTCCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041859XLOC_041859Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067015-exon-scaffold_462-1575043694:884701..884764TCONS_00067015-exon-scaffold_462-1575043694:884701..884764Clytia hemisphaericaexon
TCONS_00067015-exon-scaffold_462-1575043694:883952..884025TCONS_00067015-exon-scaffold_462-1575043694:883952..884025Clytia hemisphaericaexon
TCONS_00067015-exon-scaffold_462-1575043694:882245..882505TCONS_00067015-exon-scaffold_462-1575043694:882245..882505Clytia hemisphaericaexon
TCONS_00067015-exon-scaffold_462-1575043694:881596..882027TCONS_00067015-exon-scaffold_462-1575043694:881596..882027Clytia hemisphaericaexon
TCONS_00067015-exon-scaffold_462-1575043694:881040..881084TCONS_00067015-exon-scaffold_462-1575043694:881040..881084Clytia hemisphaericaexon
TCONS_00067015-exon-scaffold_462-1575043694:880930..880961TCONS_00067015-exon-scaffold_462-1575043694:880930..880961Clytia hemisphaericaexon
TCONS_00067015-exon-scaffold_462-1510915933:884701..884764TCONS_00067015-exon-scaffold_462-1510915933:884701..884764Clytia hemisphaericaexon
TCONS_00067015-exon-scaffold_462-1510915933:883952..884025TCONS_00067015-exon-scaffold_462-1510915933:883952..884025Clytia hemisphaericaexon
TCONS_00067015-exon-scaffold_462-1510915933:882245..882505TCONS_00067015-exon-scaffold_462-1510915933:882245..882505Clytia hemisphaericaexon
TCONS_00067015-exon-scaffold_462-1510915933:881596..882027TCONS_00067015-exon-scaffold_462-1510915933:881596..882027Clytia hemisphaericaexon
TCONS_00067015-exon-scaffold_462-1510915933:881040..881084TCONS_00067015-exon-scaffold_462-1510915933:881040..881084Clytia hemisphaericaexon
TCONS_00067015-exon-scaffold_462-1510915933:880930..880961TCONS_00067015-exon-scaffold_462-1510915933:880930..880961Clytia hemisphaericaexon
TCONS_00067015-exon-scaffold_462-1491911889:884701..884764TCONS_00067015-exon-scaffold_462-1491911889:884701..884764Clytia hemisphaericaexon
TCONS_00067015-exon-scaffold_462-1491911889:883952..884025TCONS_00067015-exon-scaffold_462-1491911889:883952..884025Clytia hemisphaericaexon
TCONS_00067015-exon-scaffold_462-1491911889:882245..882505TCONS_00067015-exon-scaffold_462-1491911889:882245..882505Clytia hemisphaericaexon
TCONS_00067015-exon-scaffold_462-1491911889:881596..882027TCONS_00067015-exon-scaffold_462-1491911889:881596..882027Clytia hemisphaericaexon
TCONS_00067015-exon-scaffold_462-1491911889:881040..881084TCONS_00067015-exon-scaffold_462-1491911889:881040..881084Clytia hemisphaericaexon
TCONS_00067015-exon-scaffold_462-1491911889:880930..880961TCONS_00067015-exon-scaffold_462-1491911889:880930..880961Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_462supercontigscaffold_462:880930..884764 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.000654546	7.84797	0.767989	3.19615	5.24624	11.9254	10.1472	17.4004	10.5884	15.6576	56.7494	27.8068	20.8151	0.244778	0.790089	10.4522	11.3697	7.28703	10.7938	6.92986	3.34734	4.80262	1.32251	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067015 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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