TCONS_00067030 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067030
Unique NameTCONS_00067030
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length560

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067030 ID=TCONS_00067030|Name=TCONS_00067030|organism=Clytia hemisphaerica|type=transcript|length=560bp
atttaacacaggttaaatcgtggtttaacttttatttgataagcgccACA
GTAATGGAATGGCTGGATGGCCGCCCTCTGCCAACTGAGTCNTaggtcat
aggcaaatggaaagttaaatttggatttaacacaggttaaatcgtggttt
aacttttatttgataagcgccACAGTAATGGAATGGCTGGATGGCCGCCC
TCTgccaactgagtctactttgctaataACCACGTGACGTCATGTTCATA
ATGGCTATCGCAACTCCCTGTTTAAGTCGAcgctctaactgaaagctgac
aggatgaaatatttttttgaatctttCGATATCTCTTGGGGTTAATTCAT
AACCATCACTTTTACCGAACACAAAGAGATTTTGAGGATGGACATTCGTA
GATACAGAAGTAGTTTGTGAAATGAAGCGTACAATTTTTGTTGCATACGA
ACGGAAGGAGACcagattctttgaaaactttatGAAACGAACCATTAAGA
TTTTATCAAGTGCATAACAAAATCTGAAACTAATATCTGGCTTGGGTGAT
TGTGGCTGGN
Run BLAST on NCBI

protein sequence of TCONS_00067030-protein

>TCONS_00067030-protein ID=TCONS_00067030-protein|Name=TCONS_00067030-protein|organism=Clytia hemisphaerica|type=polypeptide|length=111bp
QPQSPKPDISFRFCYALDKILMVRFIKFSKNLVSFRSYATKIVRFISQTT
SVSTNVHPQNLFVFGKSDGYELTPRDIERFKKIFHPVSFQLERRLKQGVA
IAIMNMTSRGY
Run BLAST on NCBI

transcript from alignment at scaffold_462:241171..241730

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067030 ID=TCONS_00067030|Name=TCONS_00067030|organism=Clytia hemisphaerica|type=transcript|length=560bp|location=Sequence derived from alignment at scaffold_462:241171..241730 (Clytia hemisphaerica)
NCCAGCCACAATCACCCAAGCCAGATATTAGTTTCAGATTTTGTTATGCA
CTTGATAAAATCTTAATGGTTCGTTTCataaagttttcaaagaatctgGT
CTCCTTCCGTTCGTATGCAACAAAAATTGTACGCTTCATTTCACAAACTA
CTTCTGTATCTACGAATGTCCATCCTCAAAATCTCTTTGTGTTCGGTAAA
AGTGATGGTTATGAATTAACCCCAAGAGATATCGaaagattcaaaaaaat
atttcatcctgtcagctttcagttagagcgTCGACTTAAACAGGGAGTTG
CGATAGCCATTATGAACATGACGTCACGTGGTtattagcaaagtagactc
agttggcAGAGGGCGGCCATCCAGCCATTCCATTACTGTggcgcttatca
aataaaagttaaaccacgatttaacctgtgttaaatccaaatttaacttt
ccatttgcctatgacctANGACTCAGTTGGCAGAGGGCGGCCATCCAGCC
ATTCCATTACTGTggcgcttatcaaataaaagttaaaccacgatttaacc
tgtgttaaat

Coding sequence (CDS) from alignment at scaffold_462:241171..241730

>TCONS_00067030 ID=TCONS_00067030|Name=TCONS_00067030|organism=Clytia hemisphaerica|type=CDS|length=336bp|location=Sequence derived from alignment at scaffold_462:241171..241730 (Clytia hemisphaerica)
CAGCCACAATCACCCAAGCCAGATATTAGTTTCAGATTTTGTTATGCACT
TGATAAAATCTTAATGGTTCGTTTCataaagttttcaaagaatctgGTCT
CCTTCCGTTCGTATGCAACAAAAATTGTACGCTTCATTTCACAAACTACT
TCTGTATCTACGAATGTCCATCCTCAAAATCTCTTTGTGTTCGGTAAAAG
TGATGGTTATGAATTAACCCCAAGAGATATCGaaagattcaaaaaaatat
ttcatcctgtcagctttcagttagagcgTCGACTTAAACAGGGAGTTGCG
ATAGCCATTATGAACATGACGTCACGTGGTtattag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041870XLOC_041870Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067030-proteinTCONS_00067030-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067030-exon-scaffold_462-1491911889:241171..241730TCONS_00067030-exon-scaffold_462-1491911889:241171..241730Clytia hemisphaericaexon
TCONS_00067030-exon-scaffold_462-1510915933:241171..241730TCONS_00067030-exon-scaffold_462-1510915933:241171..241730Clytia hemisphaericaexon
TCONS_00067030-exon-scaffold_462-1575043694:241171..241730TCONS_00067030-exon-scaffold_462-1575043694:241171..241730Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_462supercontigscaffold_462:241171..241730 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.226673	0.253881	1.00392	0.850281	0	0	0.530105	0.25698	0.448221	0.324616	1.27113	0.182545	0.71017	0.608163	0.252943	0.468971	0.404581	0.408587	0.248265	0.241224	0.776986	0.507131	0.280191	0.475414	2.84586	2.64636	0.488552	0.182032	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067030 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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