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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067031 ID=TCONS_00067031|Name=TCONS_00067031|organism=Clytia hemisphaerica|type=transcript|length=2408bp
ccatttttaTATCCCTAAAATGACGTATTTTATCTGAAAGAAAACGAAAC
GgcaaaacttttaatttttcattatcCATATAGTTTTATTGTAATGAGtg
tttatttacaaatttaattCAATAGTATTGCATAACCACTGGACGACTGT
TACTTATACattagtctctttaactcgaaactCTCTCGAACATCTCCTTA
ACAAGTGCAGTAGAACAAGTTTTCTATTCCCTTTTGAAAACAGTGACCTG
TAAACATTACTCAGTATCTCGAATTTTGTCGGACACTCAACTGTGTCCAG
TCATACCCATACGTTAAGGTTTTTAAGTAGTAACTGTTGGCTGGTGGTAA
AGTGCTCGTTTTGTAGCTTCTGGTTTTCACTTCTGCTAAGCCTTTATAGG
TTATATTCGGAGTACGAAATATCCCTGTAACTGTCGTTTTAATCGTGGTA
AACCATTACTATCAAAATAAAAGACTGGCCATTAAAAATGTTATCCAAGC
GGATAAGAGACAGTCTTTACTTTATGAAATCGTAGTAAGCACTTCACACA
TCTATAGAAATCTATAGAAACGAAATTACATCCAAAGGAATAAAGTACAT
AGGCTGATTTTGAAATTCTCTCATTCTCTTTCAATCGAAGTCTCACTTTC
ACGCAAATACTCCATTTACAGACTGTAGTCCGATTTTATGTTGAGTTTTA
CTTGGGTTCTATGAGGGCTGACAAAATTGTATTGTGTAAAGCTTGTGCCA
TCAATCTACTTAAAATTTACACACATTCCATTCGAATGTTGTAGGTTTNT
AAGAGACAGTCTTTACTTTATGAAATCGTAGTAAGCACTTCACACATTTA
TAGAAATCTATAGAAACGAAATTACATCCAAAGGAATAAAGTACATAGGC
TGATTTTGAAATTCTCTCATTCTCTTTCAATCGAAGTCTCACTTTCACGC
AAATACTCCATTTACAGACTGTAGTCCGATTTTATGTTGAGTTTTACTTG
GATTCTGTGAGGGCTGACAAAATTGTATTGTGTAAAGCTTGTGCCATCAA
TCTACTTAAAATTTACACACATTCCATTCGAATCTTGTAGGTTTTTCTCT
TGACTGACGGTCGTCGAAAAAGAACACTGTTATCAATATCCATCCTTTTC
TTCACTCAGAggttgaaaaaatttctatcaaGGAGATCCAATGATGGGGT
TATCGGTGATCAACCATCAATCagcaggcccggcggaagcggggagacta
gTCTTTGGAACAAATTAGATTTTCTTCTCAAAGTTTTAGcgaatttcatc
tcatttttgagccttcagcctccccacttttacggtaACGGACCTGATCA
GTCGAACATACCATACATATACATAAGGTAAAAGATGAAATAAATGGTCG
AATAAACGGCTACCATGAAATAACTCAACACTGGTATACAGTTCATCATA
ACAGTGTAAATCATAGCGCAAAAAGTGAAAGAATGATTTTCTAAAATACG
ATGTACTGTCAATTATTTTCTCTCTATTTTGATAGACTAGTTGAATACTG
AAACACAGCTTGCCGTGGTGTCTTTGATAGAACTAATCTCGAACTTACAA
CAAAAATTGACACAATAATGCAAACAGGTAATGCTATACTTATTCATGAA
GGAAATCTCATCTTTTTCACATtcaagaaaaatgtttcaatttgatTCAC
TTCTCTGAATGAGCTACGGTATTTTTCATTTAGTTTTTAGGAGATCGTTT
GTATTAgtttattgcatttttcatgattaaattaaattttaatttcagtT
TTCTATGGGTGGGAAATCTTGAATAACTAATTCCAACCAACAGTGTATCT
TGAAGAATaggtcaaaattttcctttgaatgAAAATCCTAAATTTCAAAA
GCAGTGGTGGAAGTTTTATTCACAAGAAATTCTGTTTGAAAAACATTGGC
AAATATTCTATTTTTCGGACATACTTTATGTCGAATTAGGTCCGTAATGA
GGTGAAaccaagatttaaaaaattaaatcttgTTAAACGAGGGAAGCTTT
TAAAGTTGAGTTATCTTAGGGTCCTTAGGTGTGGTTTACACACACCAAAT
TTAAACAACAGGAatttggatttaacacaggttaaatggcggtttaactt
ttatttgataagcgccACATACATTATTCGAATGGCTGGGTGGCCGCCCT
CCgccaactgagtctactttgctaatagCCACGTGACGCCATGTTCATAA
TGGCCATCGCAACTCCCTGTTCAAGTCGACGCTCTAAATGAAAGCTGaaa
ggatgaaatattttttacctccctccctccctgcagttatggttgtaggc
gatcctcacttatttatactaatattgtatttatcgggacaaattttccc
caaaactt Run BLAST on NCBI transcript from alignment at scaffold_462:288849..291256 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067031 ID=TCONS_00067031|Name=TCONS_00067031|organism=Clytia hemisphaerica|type=transcript|length=2408bp|location=Sequence derived from alignment at scaffold_462:288849..291256 (Clytia hemisphaerica)
aagttttggggaaaatttgtcccgataaatacaatattagtataaataag
tgaggatcgcctacaaccataactgcagggagggagggaggtaaaaaata
tttcatcctttCAGCTTTCATTTAGAGCGTCGACTTGAACAGGGAGTTGC
GATGGCCATTATGAACATGGCGTCACGTGGctattagcaaagtagactca
gttggcGGAGGGCGGCCACCCAGCCATTCGAATAATGTATGTggcgctta
tcaaataaaagttaaaccgccatttaacctgtgttaaatccaaatTCCTG
TTGTTTAAATTTGGTGTGTGTAAACCACACCTAAGGACCCTAAGATAACT
CAACTTTAAAAGCTTCCCTCGTTTAAcaagatttaattttttaaatcttg
gtTTCACCTCATTACGGACCTAATTCGACATAAAGTATGTCCGAAAAATA
GAATATTTGCCAATGTTTTTCAAACAGAATTTCTTGTGAATAAAACTTCC
ACCACTGCTTTTGAAATTTAGGATTTTcattcaaaggaaaattttgacct
ATTCTTCAAGATACACTGTTGGTTGGAATTAGTTATTCAAGATTTCCCAC
CCATAGAAAactgaaattaaaatttaatttaatcatgaaaaatgcaataa
acTAATACAAACGATCTCCTAAAAACTAAATGAAAAATACCGTAGCTCAT
TCAGAGAAGTGAatcaaattgaaacatttttcttgaATGTGAAAAAGATG
AGATTTCCTTCATGAATAAGTATAGCATTACCTGTTTGCATTATTGTGTC
AATTTTTGTTGTAAGTTCGAGATTAGTTCTATCAAAGACACCACGGCAAG
CTGTGTTTCAGTATTCAACTAGTCTATCAAAATAGAGAGAAAATAATTGA
CAGTACATCGTATTTTAGAAAATCATTCTTTCACTTTTTGCGCTATGATT
TACACTGTTATGATGAACTGTATACCAGTGTTGAGTTATTTCATGGTAGC
CGTTTATTCGACCATTTATTTCATCTTTTACCTTATGTATATGTATGGTA
TGTTCGACTGATCAGGTCCGTtaccgtaaaagtggggaggctgaaggctc
aaaaatgagatgaaattcgCTAAAACTTTGAGAAGAAAATCTAATTTGTT
CCAAAGActagtctccccgcttccgccgggcctgctGATTGATGGTTGAT
CACCGATAACCCCATCATTGGATCTCCttgatagaaattttttcaaccTC
TGAGTGAAGAAAAGGATGGATATTGATAACAGTGTTCTTTTTCGACGACC
GTCAGTCAAGAGAAAAACCTACAAGATTCGAATGGAATGTGTGTAAATTT
TAAGTAGATTGATGGCACAAGCTTTACACAATACAATTTTGTCAGCCCTC
ACAGAATCCAAGTAAAACTCAACATAAAATCGGACTACAGTCTGTAAATG
GAGTATTTGCGTGAAAGTGAGACTTCGATTGAAAGAGAATGAGAGAATTT
CAAAATCAGCCTATGTACTTTATTCCTTTGGATGTAATTTCGTTTCTATA
GATTTCTATAAATGTGTGAAGTGCTTACTACGATTTCATAAAGTAAAGAC
TGTCTCTTANAAACCTACAACATTCGAATGGAATGTGTGTAAATTTTAAG
TAGATTGATGGCACAAGCTTTACACAATACAATTTTGTCAGCCCTCATAG
AACCCAAGTAAAACTCAACATAAAATCGGACTACAGTCTGTAAATGGAGT
ATTTGCGTGAAAGTGAGACTTCGATTGAAAGAGAATGAGAGAATTTCAAA
ATCAGCCTATGTACTTTATTCCTTTGGATGTAATTTCGTTTCTATAGATT
TCTATAGATGTGTGAAGTGCTTACTACGATTTCATAAAGTAAAGACTGTC
TCTTATCCGCTTGGATAACATTTTTAATGGCCAGTCTTTTATTTTGATAG
TAATGGTTTACCACGATTAAAACGACAGTTACAGGGATATTTCGTACTCC
GAATATAACCTATAAAGGCTTAGCAGAAGTGAAAACCAGAAGCTACAAAA
CGAGCACTTTACCACCAGCCAACAGTTACTACTTAAAAACCTTAACGTAT
GGGTATGACTGGACACAGTTGAGTGTCCGACAAAATTCGAGATACTGAGT
AATGTTTACAGGTCACTGTTTTCAAAAGGGAATAGAAAACTTGTTCTACT
GCACTTGTTAAGGAGATGTTCGAGAGagtttcgagttaaagagactaatG
TATAAGTAACAGTCGTCCAGTGGTTATGCAATACTATTGaattaaatttg
taaataaacaCTCATTACAATAAAACTATATGgataatgaaaaattaaaa
gttttgcCGTTTCGTTTTCTTTCAGATAAAATACGTCATTTTAGGGATAt
aaaaatgg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067031-exon-scaffold_462-1491911889:288849..291256 | TCONS_00067031-exon-scaffold_462-1491911889:288849..291256 | Clytia hemisphaerica | exon |
| TCONS_00067031-exon-scaffold_462-1510915933:288849..291256 | TCONS_00067031-exon-scaffold_462-1510915933:288849..291256 | Clytia hemisphaerica | exon |
| TCONS_00067031-exon-scaffold_462-1575043694:288849..291256 | TCONS_00067031-exon-scaffold_462-1575043694:288849..291256 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_462 | supercontig | scaffold_462:288849..291256 . |
Blast
The following BLAST results are available for this feature:
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