TCONS_00067033 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067033
Unique NameTCONS_00067033
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length544

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067033 ID=TCONS_00067033|Name=TCONS_00067033|organism=Clytia hemisphaerica|type=transcript|length=544bp
GGTCcatcagttcctgtcgtctctggtctatcagttcctgtcgtctctgg
tgcgtcagttcctgtcgtctctggtccgtcagttcctgtcgtctctggtc
cgtcagttcctgtcgtctctggcctatcagttcctgtcgtctctaaTCCG
CTcattcctgtcgtctctggtttATCAGATTGTTATCAATATAATCAAGA
TGAATTGATTGCACTTCCACGCACTCCAAAAATAGATTTACGAACAATTT
CTACTGGTCCATCTACATGTAAAACAGTACATACAACAAGAAAAACGTCC
AATGAACAACAATTGTCAAACagtaaaacaaaattgaatccATTAGCAAA
GACTTATAACTTGAGATCGTTGCGATCCAAAACTTCTTCTTCGGGAGTGT
AAAGATTCTTACATCTGTTACATAATCTGCGTGCTTTTCGCGCGCTTACA
GTTTCACGATAATCGGAATGAGCCGTCGTACGGATGAGGCGGAATAGATt
atatcgactttgttttctattgttattttatattttacggGGAG
Run BLAST on NCBI

protein sequence of TCONS_00067033-protein

>TCONS_00067033-protein ID=TCONS_00067033-protein|Name=TCONS_00067033-protein|organism=Clytia hemisphaerica|type=polypeptide|length=133bp
GPSVPVVSGLSVPVVSGASVPVVSGPSVPVVSGPSVPVVSGLSVPVVSNP
LIPVVSGLSDCYQYNQDELIALPRTPKIDLRTISTGPSTCKTVHTTRKTS
NEQQLSNSKTKLNPLAKTYNLRSLRSKTSSSGV
Run BLAST on NCBI

transcript from alignment at scaffold_462:334966..335509

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067033 ID=TCONS_00067033|Name=TCONS_00067033|organism=Clytia hemisphaerica|type=transcript|length=544bp|location=Sequence derived from alignment at scaffold_462:334966..335509 (Clytia hemisphaerica)
CTCCccgtaaaatataaaataacaatagaaaacaaagtcgatataATCTA
TTCCGCCTCATCCGTACGACGGCTCATTCCGATTATCGTGAAACTGTAAG
CGCGCGAAAAGCACGCAGATTATGTAACAGATGTAAGAATCTTTACACTC
CCGAAGAAGAAGTTTTGGATCGCAACGATCTCAAGTTATAAGTCTTTGCT
AATggattcaattttgttttactGTTTGACAATTGTTGTTCATTGGACGT
TTTTCTTGTTGTATGTACTGTTTTACATGTAGATGGACCAGTAGAAATTG
TTCGTAAATCTATTTTTGGAGTGCGTGGAAGTGCAATCAATTCATCTTGA
TTATATTGATAACAATCTGATaaaccagagacgacaggaatgAGCGGAtt
agagacgacaggaactgataggccagagacgacaggaactgacggaccag
agacgacaggaactgacggaccagagacgacaggaactgacgcaccagag
acgacaggaactgatagaccagagacgacaggaactgatgGACC

Coding sequence (CDS) from alignment at scaffold_462:334966..335509

>TCONS_00067033 ID=TCONS_00067033|Name=TCONS_00067033|organism=Clytia hemisphaerica|type=CDS|length=402bp|location=Sequence derived from alignment at scaffold_462:334966..335509 (Clytia hemisphaerica)
TTACACTCCCGAAGAAGAAGTTTTGGATCGCAACGATCTCAAGTTATAAG
TCTTTGCTAATggattcaattttgttttactGTTTGACAATTGTTGTTCA
TTGGACGTTTTTCTTGTTGTATGTACTGTTTTACATGTAGATGGACCAGT
AGAAATTGTTCGTAAATCTATTTTTGGAGTGCGTGGAAGTGCAATCAATT
CATCTTGATTATATTGATAACAATCTGATaaaccagagacgacaggaatg
AGCGGAttagagacgacaggaactgataggccagagacgacaggaactga
cggaccagagacgacaggaactgacggaccagagacgacaggaactgacg
caccagagacgacaggaactgatagaccagagacgacaggaactgatgGA
CC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041872XLOC_041872Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067033-exon-scaffold_462-1491911889:334966..335509TCONS_00067033-exon-scaffold_462-1491911889:334966..335509Clytia hemisphaericaexon
TCONS_00067033-exon-scaffold_462-1510915933:334966..335509TCONS_00067033-exon-scaffold_462-1510915933:334966..335509Clytia hemisphaericaexon
TCONS_00067033-exon-scaffold_462-1575043694:334966..335509TCONS_00067033-exon-scaffold_462-1575043694:334966..335509Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067033-proteinTCONS_00067033-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_462supercontigscaffold_462:334966..335509 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.777453	0.944686	0.696678	0.757141	58.0944	47.538	29.7718	38.9946	15.8991	24.4767	10.353	6.80369	2.25277	1.46669	1.97795	2.44398	4.33134	7.52886	0.736819	2.45653	4.65328	4.63482	1.88142	2.47677	1.31199	1.5089	1.15175	1.64724	1.23653	0.909805
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067033 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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