TCONS_00067167 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067167
Unique NameTCONS_00067167
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length679

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067167 ID=TCONS_00067167|Name=TCONS_00067167|organism=Clytia hemisphaerica|type=transcript|length=679bp
agccccactggacaaatcactcaccccactggaatattgtagtaaaaaaa
caccccattgaaaatgataaaaagtttacaTATATCCCACTCGAAATGCC
CTTATTTTAACGTACCCCTGTagaacttttctttcaaaaaatcacccccC
ACTAGAATTTCTCCTTCCCCTTCTTTAAAGACTTTAAAGGTGAAATATCC
AAAAAAGCCAAAAGAATCTGCTCGCTTCGGTCGCTCGCCATCAAATGTTC
CACTTCAATATATTAACTGTATTTAACCCCACTTCTATGGTCATTGTCAT
GGTCATTTTAAAACGTAGAAAATGCCAAACGAGAGGGgttgaaaatcaaa
accaaACAGTTGTACGTGTacctttctttctttaaagctaGGTTATAGCC
TGAAAGATTTTCGAGAGGCTTTCTCACTTGCGTAGATACTGAAAGAAAGA
CCTCTACTTAAATCATGTTGACTGAACATTAGAAGGTTCCAGAGttctta
aaatttgatataacgTACTGCTTCTCTGTAGCCCCCTCCCCCCAGACCTC
ATTACATTTCCTGTTACAGTGTAAGAGTAAATCCACATGATCAAGATGAT
ATTTCTAGTGATATTTAGTAGCATGTAAGAAGCAGATTTTTACTAGCACT
AAACCAAAAGTTAGCCAACACCTTCTATC
Run BLAST on NCBI

transcript from alignment at scaffold_464:209727..210405

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067167 ID=TCONS_00067167|Name=TCONS_00067167|organism=Clytia hemisphaerica|type=transcript|length=679bp|location=Sequence derived from alignment at scaffold_464:209727..210405 (Clytia hemisphaerica)
GATAGAAGGTGTTGGCTAACTTTTGGTTTAGTGCTAGTAAAAATCTGCTT
CTTACATGCTACTAAATATCACTAGAAATATCATCTTGATCATGTGGATT
TACTCTTACACTGTAACAGGAAATGTAATGAGGTCTGGGGGGAGGGGGCT
ACAGAGAAGCAGTAcgttatatcaaattttaagaaCTCTGGAACCTTCTA
ATGTTCAGTCAACATGATTTAAGTAGAGGTCTTTCTTTCAGTATCTACGC
AAGTGAGAAAGCCTCTCGAAAATCTTTCAGGCTATAACCtagctttaaag
aaagaaaggtACACGTACAACTGTttggttttgattttcaacCCCTCTCG
TTTGGCATTTTCTACGTTTTAAAATGACCATGACAATGACCATAGAAGTG
GGGTTAAATACAGTTAATATATTGAAGTGGAACATTTGATGGCGAGCGAC
CGAAGCGAGCAGATTCTTTTGGCTTTTTTGGATATTTCACCTTTAAAGTC
TTTAAAGAAGGGGAAGGAGAAATTCTAGTGgggggtgattttttgaaaga
aaagttctACAGGGGTACGTTAAAATAAGGGCATTTCGAGTGGGATATAt
gtaaactttttatcattttcaatggggtgtttttttactacaatattcca
gtggggtgagtgatttgtccagtggggct
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041964XLOC_041964Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067167-exon-scaffold_464-1491911889:209727..210405TCONS_00067167-exon-scaffold_464-1491911889:209727..210405Clytia hemisphaericaexon
TCONS_00067167-exon-scaffold_464-1510915933:209727..210405TCONS_00067167-exon-scaffold_464-1510915933:209727..210405Clytia hemisphaericaexon
TCONS_00067167-exon-scaffold_464-1575043694:209727..210405TCONS_00067167-exon-scaffold_464-1575043694:209727..210405Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_464supercontigscaffold_464:209727..210405 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.119534	0.272828	0.654767	0.518624	0.512513	0.403508	0.767582	1.35998	0.572484	0.853184	0.305904	0.301634	0.909769	0.580733	0.306566	0.367985	0.339996	0.175163	0.727602	0.212814	0.568814	0.18673	0.0865491	0	1.67405	1.43865	0.184146	0.313663	0.538074	0.0868989
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067167 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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