TCONS_00067169 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067169
Unique NameTCONS_00067169
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length352

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067169 ID=TCONS_00067169|Name=TCONS_00067169|organism=Clytia hemisphaerica|type=transcript|length=352bp
CAAAATAATTCAGTGTGTTGAATTTTGTGCGTGGCTCTTGTTGATCGTCG
TCCAGAAAGGAGTTTTGAACTTTCAGAGTTGTTGATACTAGTACAATTTC
ATGATGTGATGTGCTTTGCAATACAGGTAATGTTGTGTAACTGTGTATTA
TTTGTTCGTTGTTAGTGAAAACAAGGTCTAATGTATTTCCATCCTTGTGT
GTTGGCAAATCGATATATTGTGACATGAAGAATACGTTGCAAAACTGATT
CAAAGAGTTTAGGATAAGACGGTCGTTGATAGTACATCCTGATTTTGGAA
GGCCCTCAGGCCAAGTTGCTTTTGGAAGGTTGAAATCACCTCCAAAAATG
AT
Run BLAST on NCBI

protein sequence of TCONS_00067169-protein

>TCONS_00067169-protein ID=TCONS_00067169-protein|Name=TCONS_00067169-protein|organism=Clytia hemisphaerica|type=polypeptide|length=117bp
IIFGGDFNLPKATWPEGLPKSGCTINDRLILNSLNQFCNVFFMSQYIDLP
THKDGNTLDLVFTNNEQIIHSYTTLPVLQSTSHHEIVLVSTTLKVQNSFL
DDDQQEPRTKFNTLNYF
Run BLAST on NCBI

transcript from alignment at scaffold_464:288017..288368

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067169 ID=TCONS_00067169|Name=TCONS_00067169|organism=Clytia hemisphaerica|type=transcript|length=352bp|location=Sequence derived from alignment at scaffold_464:288017..288368 (Clytia hemisphaerica)
ATCATTTTTGGAGGTGATTTCAACCTTCCAAAAGCAACTTGGCCTGAGGG
CCTTCCAAAATCAGGATGTACTATCAACGACCGTCTTATCCTAAACTCTT
TGAATCAGTTTTGCAACGTATTCTTCATGTCACAATATATCGATTTGCCA
ACACACAAGGATGGAAATACATTAGACCTTGTTTTCACTAACAACGAACA
AATAATACACAGTTACACAACATTACCTGTATTGCAAAGCACATCACATC
ATGAAATTGTACTAGTATCAACAACTCTGAAAGTTCAAAACTCCTTTCTG
GACGACGATCAACAAGAGCCACGCACAAAATTCAACACACTGAATTATTT
TG

Coding sequence (CDS) from alignment at scaffold_464:288017..288368

>TCONS_00067169 ID=TCONS_00067169|Name=TCONS_00067169|organism=Clytia hemisphaerica|type=CDS|length=351bp|location=Sequence derived from alignment at scaffold_464:288017..288368 (Clytia hemisphaerica)
ATCATTTTTGGAGGTGATTTCAACCTTCCAAAAGCAACTTGGCCTGAGGG
CCTTCCAAAATCAGGATGTACTATCAACGACCGTCTTATCCTAAACTCTT
TGAATCAGTTTTGCAACGTATTCTTCATGTCACAATATATCGATTTGCCA
ACACACAAGGATGGAAATACATTAGACCTTGTTTTCACTAACAACGAACA
AATAATACACAGTTACACAACATTACCTGTATTGCAAAGCACATCACATC
ATGAAATTGTACTAGTATCAACAACTCTGAAAGTTCAAAACTCCTTTCTG
GACGACGATCAACAAGAGCCACGCACAAAATTCAACACACTGAATTATTT
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041966XLOC_041966Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067169-exon-scaffold_464-1491911889:288017..288368TCONS_00067169-exon-scaffold_464-1491911889:288017..288368Clytia hemisphaericaexon
TCONS_00067169-exon-scaffold_464-1510915933:288017..288368TCONS_00067169-exon-scaffold_464-1510915933:288017..288368Clytia hemisphaericaexon
TCONS_00067169-exon-scaffold_464-1575043694:288017..288368TCONS_00067169-exon-scaffold_464-1575043694:288017..288368Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067169-proteinTCONS_00067169-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_464supercontigscaffold_464:288017..288368 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.37971	2.64745	3.34861	2.41102	2.342	5.12794	2.55173	3.28474	1.04108	1.61879	0.825846	2.89005	0.858383	2.36881	0.140877	0.388111	1.25467	1.23457	1.98394	0.827928	0.545361	1.0697	0	0.807059	0.84382	0	1.79407	1.97517	0.378786	1.18515
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005135Endo/exonuclease/phosphatase
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067169 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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