TCONS_00067539 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067539
Unique NameTCONS_00067539
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length371

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067539 ID=TCONS_00067539|Name=TCONS_00067539|organism=Clytia hemisphaerica|type=transcript|length=371bp
gaaaaattcaagACGAATCAGACAAAGCAAAAGTTCGAAGATCTGACCAA
TTAAGaaaggaaaatttgagaaaaaatctagACGAATCAGACAAAGCAAA
AGTTCGCGAAAAAGATAAAACGAGGAAAGAAACTTATCGGCTTCTAAATA
AATCAGAAAGGAAAAAAGAGTTTGATAAAGTACAAGGCAAAAGTATGGTT
GACCCATCGATCACCCTAACTAAAGCATTTGAAATCGTTCAGCAAGATTT
TGAGTGTGCTATAAAAGAAGGCCCAACAAATAAATGTCATATTTGCATAA
AATGGGAGTATAAAGGAAACGGTAAAAGATTTCTCCACaaagaatatgaa
aatttgACCATGTTTGAATTN
Run BLAST on NCBI

protein sequence of TCONS_00067539-protein

>TCONS_00067539-protein ID=TCONS_00067539-protein|Name=TCONS_00067539-protein|organism=Clytia hemisphaerica|type=polypeptide|length=123bp
KIQDESDKAKVRRSDQLRKENLRKNLDESDKAKVREKDKTRKETYRLLNK
SERKKEFDKVQGKSMVDPSITLTKAFEIVQQDFECAIKEGPTNKCHICIK
WEYKGNGKRFLHKEYENLTMFEX
Run BLAST on NCBI

transcript from alignment at scaffold_470:2046..2416

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067539 ID=TCONS_00067539|Name=TCONS_00067539|organism=Clytia hemisphaerica|type=transcript|length=371bp|location=Sequence derived from alignment at scaffold_470:2046..2416 (Clytia hemisphaerica)
NAATTCAAACATGGTcaaattttcatattctttGTGGAGAAATCTTTTAC
CGTTTCCTTTATACTCCCATTTTATGCAAATATGACATTTATTTGTTGGG
CCTTCTTTTATAGCACACTCAAAATCTTGCTGAACGATTTCAAATGCTTT
AGTTAGGGTGATCGATGGGTCAACCATACTTTTGCCTTGTACTTTATCAA
ACTCTTTTTTCCTTTCTGATTTATTTAGAAGCCGATAAGTTTCTTTCCTC
GTTTTATCTTTTTCGCGAACTTTTGCTTTGTCTGATTCGTctagattttt
tctcaaattttcctttCTTAATTGGTCAGATCTTCGAACTTTTGCTTTGT
CTGATTCGTcttgaatttttc

Coding sequence (CDS) from alignment at scaffold_470:2046..2416

>TCONS_00067539 ID=TCONS_00067539|Name=TCONS_00067539|organism=Clytia hemisphaerica|type=CDS|length=369bp|location=Sequence derived from alignment at scaffold_470:2046..2416 (Clytia hemisphaerica)
NAATTCAAACATGGTcaaattttcatattctttGTGGAGAAATCTTTTAC
CGTTTCCTTTATACTCCCATTTTATGCAAATATGACATTTATTTGTTGGG
CCTTCTTTTATAGCACACTCAAAATCTTGCTGAACGATTTCAAATGCTTT
AGTTAGGGTGATCGATGGGTCAACCATACTTTTGCCTTGTACTTTATCAA
ACTCTTTTTTCCTTTCTGATTTATTTAGAAGCCGATAAGTTTCTTTCCTC
GTTTTATCTTTTTCGCGAACTTTTGCTTTGTCTGATTCGTctagattttt
tctcaaattttcctttCTTAATTGGTCAGATCTTCGAACTTTTGCTTTGT
CTGATTCGTcttgaatttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042181XLOC_042181Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067539-exon-scaffold_470-1491911889:2046..2416TCONS_00067539-exon-scaffold_470-1491911889:2046..2416Clytia hemisphaericaexon
TCONS_00067539-exon-scaffold_470-1510915933:2046..2416TCONS_00067539-exon-scaffold_470-1510915933:2046..2416Clytia hemisphaericaexon
TCONS_00067539-exon-scaffold_470-1575043694:2046..2416TCONS_00067539-exon-scaffold_470-1575043694:2046..2416Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067539-proteinTCONS_00067539-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_470supercontigscaffold_470:2046..2416 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.35723	0.957686	0	2.53243	1.18514	2.23562	2.42421	1.44412	0.369091	0.349884	0.443749	0	0.815685	0.330987	0.124355	0.323469	0.357151	0.807829	0	0.243609	0.21174	0.479182	0.364063	0.725748	1.35999	2.64092	0.706151	0.402342	0.642053	0.593297
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067539 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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