TCONS_00067596 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067596
Unique NameTCONS_00067596
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1900

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067596 ID=TCONS_00067596|Name=TCONS_00067596|organism=Clytia hemisphaerica|type=transcript|length=1900bp
GAGGAATTTGGAAATAAATAATCATTTCATTACCAAACTGAAACTTGGTG
CTTGGATTAACACGCGACCAAGCGGGTCCCTGCAGAAGAACGTTGTTAAT
AAAGGTGCAAAGAGAAGCCAATTATGAGAATGTTGCTGAGTCTTGCTTCA
AGTCTGGCTCTCTTATGTGTTGTTCATTGCTCACTATACCCAAGCCAACA
AGATGTGTTAGAGGCTAAAGTTCACTTGGACACGATGATTGACAACACAA
TCATCAACAATAATGAAAAACTACTGATAGCTGGGTTTGTACGTTTAGCA
TTCCACGATTGTGTCGGTGCTGGTGGATGTGATGGTTGTATTGATCACAA
CAACCCTTCAAATGGTGGATTGAGTTTCTATACTAGTAAATTGAATCCTG
TATGGGAAGCACATGTGAGAGGCAAAATGTCCAGAGCTGATTTTTACATG
TTGGCTGGCTATGTTGCTTTACAACACGCCTCTGATGGATTGACTGATCA
GTTTACAGCCTTTCCAAAATTTGGACGACTAGATTGTCCGAGTACTACCG
GGGATGAGGATATATCTGCTACATTTCCCAAAGCAACATGGAATTTACCA
GAAGCAAGCGATTTCTTTGCAGATAACTTTCAATTCTCGGTTGAGGAGAC
AGTAGTCATCTTGGGTGCTCACACATTGGGAAGGTGCCGACTTGCTAACT
CAGGTTTTGAAGGGCGTTGGGTGAAAGGCAGTGTGAACAACATACCCCAA
ACTGACATGTTAAACAATGAATACTACAAACAAATCAGAGGAAACTGGAC
ACAGAAACAAACCAGTGAAGGCAAATGGCAATGGCAAAGACCTGGTACAA
CAGCCAACACAGATTTTGAACAActcagaaattcaaaaaatcaaccTAAC
ATGTTCCTTAATGTAGATATGGCTATCGCTTGGGATCTGGACTCAAATGG
TGGGCTGGACACAGATGACGGTCAAGCACAATGCGTTGTAGAAGTGGAAA
ACAACCAATGTATCGCAACACCTTCTGTTCCATGCTGCAACAAAGCCGAT
ACAAATATAGGTTCAGTGCGACATGGgaacaaactttttttgaagtACGT
AAACGATAATGCAGTATTTGTCAGCAAGTTNGGGAACAACCTTTTTTTGA
AGTACGTAAACGATAATGCAGTATTTGTCAGCAAGTTCTCAGAAGTTTTC
GTTAAGATGACGGAAATTCGAGAAGTAGAGGAATTGCAAGATGTCTTCAA
TTCAAATGATGCATTCGAACGCAAAGATGAAGGAAAAAGGGTGCACCACC
ACTCTCACCACCCCCACCACCACCCACACCACCATCCTCGTCATGATCAT
CCTCACCACCATCGTCATCACCATGGAAACAGAAGAATCGAGGACCAGGA
TGACGAAGATGAGGACATCGAACAAATGCTTTACGATTTTCTTCACAATT
AACAATTAACAACACTTCACAAAATGAATTATAAGACAAACTAAACCAGA
GAGTCATCAGAGGTCCCCTTCCGTTAACTTTTGATCATTATTGAGAAAGT
GTGATAAAATTGGTTGATCTGTAAAATGTAATACGGACAGTAAATGTGAA
GAGAATTTACAAGATCCTCGGCCATGTAAACTATGAGCCTTCAAAGTTTA
TTATTAATTAATTTGGGAATGATGAcatgtttttcattgtttgGATATTA
tcaatataattgatcaaaagttatcagaaatcCCTCTACCTGGTTGTTAA
ATAAGAAATTCGACTTTTATGAATTTTAGTCTGGGAGTCTCTGAATTTAA
AGTCTCTTTTGATTCTTTACACCTAATTTATAGTCTCCAAATCATCCTGG
AATCCTCAACATAGATAATctaataatattttaatttttatttttcactt
Run BLAST on NCBI

protein sequence of TCONS_00067596-protein

>TCONS_00067596-protein ID=TCONS_00067596-protein|Name=TCONS_00067596-protein|organism=Clytia hemisphaerica|type=polypeptide|length=442bp
MRMLLSLASSLALLCVVHCSLYPSQQDVLEAKVHLDTMIDNTIINNNEKL
LIAGFVRLAFHDCVGAGGCDGCIDHNNPSNGGLSFYTSKLNPVWEAHVRG
KMSRADFYMLAGYVALQHASDGLTDQFTAFPKFGRLDCPSTTGDEDISAT
FPKATWNLPEASDFFADNFQFSVEETVVILGAHTLGRCRLANSGFEGRWV
KGSVNNIPQTDMLNNEYYKQIRGNWTQKQTSEGKWQWQRPGTTANTDFEQ
LRNSKNQPNMFLNVDMAIAWDLDSNGGLDTDDGQAQCVVEVENNQCIATP
SVPCCNKADTNIGSVRHGNKLFLKYVNDNAVFVSKXGNNLFLKYVNDNAV
FVSKFSEVFVKMTEIREVEELQDVFNSNDAFERKDEGKRVHHHSHHPHHH
PHHHPRHDHPHHHRHHHGNRRIEDQDDEDEDIEQMLYDFLHN
Run BLAST on NCBI

transcript from alignment at scaffold_471:102657..105306-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067596 ID=TCONS_00067596|Name=TCONS_00067596|organism=Clytia hemisphaerica|type=transcript|length=2650bp|location=Sequence derived from alignment at scaffold_471:102657..105306- (Clytia hemisphaerica)
GAGGAATTTGGAAATAAATAATCATTTCATTACCAAACTGAAACTTGGTG
CTTGGATTAACACGCGACCAAGCGGGTCCCTGCAGAAGAACGTTGTTAAT
AAAGGTGCAAAGAGAAGCCAATTATGAGAATGTTGCTGAGTCTTGCTTCA
AGTCTGGCTCTCTTATGTGTTGTTCATTGCTCACTATACCCAAGCCAACA
AGATGTGTTAGAGGCTAAAGTTCACTTGGACACGATGATTGACAACACAA
TCATCAACAATAATGAAAAACTACTGATAGCTGGGTTTGTACGTTTAGCA
TTCCACGATTGTGTCGGTGCTGGTGGATGTGATGGTTGTATTGATCACAA
CAACCCTTCAAATGGTGGATTGAGTTTCTATACTAGTAAATTGAATCCTG
TATGGGAAGCACATGTGAGAGGCAAAATGTCCAGAGCTGATTTTTACATG
TTGGCTGGCTATGTTGCTTTACAACACGCCTCTGATGGATTGACTGATCA
GTTTACAGCCTTTCCAAAATTTGGACGACTAGATTGTCCGAGTACTACCG
GGGATGAGGATATATCTGCTACATTTCCCAAAGGTATTTTTACTTCCTTT
TGTGTTTTGTGTTCATTACCTTATTACTTCGAATTCTTCTTATTATGAAT
GCGAGCGACCCTTGAGTGAACGCCCCCTTATAAAAGCGCACTGTCCCATT
CTTTAATTAACGAACAGTAGCGTAGTCAGGAGGGGCCCAAAATGTGTATA
GGAGAGCAGATTTTTATGACATAGTAATTATCTATTCATAAAATACCCGA
GCCGCACTGTTGGGTCCTAGGAAAGACGAAACACGTGTCTGAGGATAGGA
TGTATTCATAATATAAAAAGATAATCACCGTGTCATAAAAATCTGCTCTC
CTACACAAATTTTGCGCCCCTCTTGTCTACGCTTCATAGCGAATTTGGGG
ATTGGCAAATCTAACAAGAAACTTGCGACTTATGATACAAAATTCTCAAT
TCTTTTAGGCAACTTGAAATGACCTAAAGTTGCAGCAAAATCAAGCAAAA
TAGACCAAAGCTCCGTTTTCGGAATTTGACTAGACTGTCAACTTCAATTA
ACATTCCTTTTTTGTTTTTTTTTCTTATTCAAGCAACATGGAATTTACCA
GAAGCAAGCGATTTCTTTGCAGATAACTTTCAATTCTCGGTTGAGGAGAC
AGTAGTCATCTTGGGTGCTCACACATTGGGAAGGTGCCGACTTGCTAACT
CAGGTTTTGAAGGGCGTTGGGTGAAAGGCAGTGTGAACAACATACCCCAA
ACTGACATGTTAAACAATGAATACTACAAACAAATCAGAGGAAACTGGAC
ACAGGTATGTTCTTACACATAATATCAATTGGACTGAATTGGTCAGTCAC
AACAGGACAAATACAAATAAGTAAAAAGCAAAAAAGCAACCATACAGTAT
ATATGATTATTTCAAAAAGAAGAATTCCCTGACTTATAGAAATCAACCCA
TTAAACTTTTATCACGTTAGATGAATTGAGACAATTTCCTTATTGTTATT
TCAGAAACAAACCAGTGAAGGCAAATGGCAATGGCAAAGACCTGGTACAA
CAGCCAACACAGATTTTGAACAACTCAGAAATTCAAAAAATCAACCTAAC
ATGTTCCTTAATGTAGATATGGCTATCGCTTGGGATCTGGACTCAAATGG
TGGGCTGGACACAGATGACGGTCAAGCACAATGCGTTGTAGAAGTGGAAA
ACAACCAATGTATCGCAACACCTTCTGTTCCATGCTGCAACAAAGCCGAT
ACAAATATAGGTTCAGTGCGACATGGGAACAAACTTTTTTTGAAGTACGT
AAACGATAATGCAGTATTTGTCAGCAAGTTNGGGAACAACCTTTTTTTGA
AGTACGTAAACGATAATGCAGTATTTGTCAGCAAGTTCTCAGAAGTTTTC
GTTAAGATGACGGAAATTCGAGAAGTAGAGGAATTGCAAGATGTCTTCAA
TTCAAATGATGCATTCGAACGCAAAGATGAAGGAAAAAGGGTGCACCACC
ACTCTCACCACCCCCACCACCACCCACACCACCATCCTCGTCATGATCAT
CCTCACCACCATCGTCATCACCATGGAAACAGAAGAATCGAGGACCAGGA
TGACGAAGATGAGGACATCGAACAAATGCTTTACGATTTTCTTCACAATT
AACAATTAACAACACTTCACAAAATGAATTATAAGACAAACTAAACCAGA
GAGTCATCAGAGGTCCCCTTCCGTTAACTTTTGATCATTATTGAGAAAGT
GTGATAAAATTGGTTGATCTGTAAAATGTAATACGGACAGTAAATGTGAA
GAGAATTTACAAGATCCTCGGCCATGTAAACTATGAGCCTTCAAAGTTTA
TTATTAATTAATTTGGGAATGATGACATGTTTTTCATTGTTTGGATATTA
TCAATATAATTGATCAAAAGTTATCAGAAATCCCTCTACCTGGTTGTTAA
ATAAGAAATTCGACTTTTATGAATTTTAGTCTGGGAGTCTCTGAATTTAA
AGTCTCTTTTGATTCTTTACACCTAATTTATAGTCTCCAAATCATCCTGG
AATCCTCAACATAGATAATCTAATAATATTTTAATTTTTATTTTTCACTT

Coding sequence (CDS) from alignment at scaffold_471:102657..105306-

>TCONS_00067596 ID=TCONS_00067596|Name=TCONS_00067596|organism=Clytia hemisphaerica|type=CDS|length=3987bp|location=Sequence derived from alignment at scaffold_471:102657..105306- (Clytia hemisphaerica)
AAACAAACCAGTGAAGGCAAATGGCAATGGCAAAGACCTGGTACAACAGC
CAACACAGATTTTGAACAACTCAGAAATTCAAAAAATCAACCTAACATGT
TCCTTAATGTAGATATGGCTATCGCTTGGGATCTGGACTCAAATGGTGGG
CTGGACACAGATGACGGTCAAGCACAATGCGTTGTAGAAGTGGAAAACAA
CCAATGTATCGCAACACCTTCTGTTCCATGCTGCAACAAAGCCGATACAA
ATATAGGTTCAGTGCGACATGGGAACAAACTTTTTTTGAAGTACGTAAAC
GATAATGCAGTATTTGTCAGCAAGTTNGGGAACAACCTTTTTTTGAAGTA
CGTAAACGATAATGCAGTATTTGTCAGCAAGTTCTCAGAAGTTTTCGTTA
AGATGACGGAAATTCGAGAAGTAGAGGAATTGCAAGATGTCTTCAATTCA
AATGATGCATTCGAACGCAAAGATGAAGGAAAAAGGGTGCACCACCACTC
TCACCACCCCCACCACCACCCACACCACCATCCTCGTCATGATCATCCTC
ACCACCATCGTCATCACCATGGAAACAGAAGAATCGAGGACCAGGATGAC
GAAGATGAGGACATCGAACAAATGCTTTACGATTTTCTTCACAATTAACA
ACATGGAATTTACCAGAAGCAAGCGATTTCTTTGCAGATAACTTTCAATT
CTCGGTTGAGGAGACAGTAGTCATCTTGGGTGCTCACACATTGGGAAGGT
GCCGACTTGCTAACTCAGGTTTTGAAGGGCGTTGGGTGAAAGGCAGTGTG
AACAACATACCCCAAACTGACATGTTAAACAATGAATACTACAAACAAAT
CAGAGGAAACTGGACACAGATGAGAATGTTGCTGAGTCTTGCTTCAAGTC
TGGCTCTCTTATGTGTTGTTCATTGCTCACTATACCCAAGCCAACAAGAT
GTGTTAGAGGCTAAAGTTCACTTGGACACGATGATTGACAACACAATCAT
CAACAATAATGAAAAACTACTGATAGCTGGGTTTGTACGTTTAGCATTCC
ACGATTGTGTCGGTGCTGGTGGATGTGATGGTTGTATTGATCACAACAAC
CCTTCAAATGGTGGATTGAGTTTCTATACTAGTAAATTGAATCCTGTATG
GGAAGCACATGTGAGAGGCAAAATGTCCAGAGCTGATTTTTACATGTTGG
CTGGCTATGTTGCTTTACAACACGCCTCTGATGGATTGACTGATCAGTTT
ACAGCCTTTCCAAAATTTGGACGACTAGATTGTCCGAGTACTACCGGGGA
TGAGGATATATCTGCTACATTTCCCAAAGAAACAAACCAGTGAAGGCAAA
TGGCAATGGCAAAGACCTGGTACAACAGCCAACACAGATTTTGAACAACT
CAGAAATTCAAAAAATCAACCTAACATGTTCCTTAATGTAGATATGGCTA
TCGCTTGGGATCTGGACTCAAATGGTGGGCTGGACACAGATGACGGTCAA
GCACAATGCGTTGTAGAAGTGGAAAACAACCAATGTATCGCAACACCTTC
TGTTCCATGCTGCAACAAAGCCGATACAAATATAGGTTCAGTGCGACATG
GGAACAAACTTTTTTTGAAGTACGTAAACGATAATGCAGTATTTGTCAGC
AAGTTNGGGAACAACCTTTTTTTGAAGTACGTAAACGATAATGCAGTATT
TGTCAGCAAGTTCTCAGAAGTTTTCGTTAAGATGACGGAAATTCGAGAAG
TAGAGGAATTGCAAGATGTCTTCAATTCAAATGATGCATTCGAACGCAAA
GATGAAGGAAAAAGGGTGCACCACCACTCTCACCACCCCCACCACCACCC
ACACCACCATCCTCGTCATGATCATCCTCACCACCATCGTCATCACCATG
GAAACAGAAGAATCGAGGACCAGGATGACGAAGATGAGGACATCGAACAA
ATGCTTTACGATTTTCTTCACAATTAACAACATGGAATTTACCAGAAGCA
AGCGATTTCTTTGCAGATAACTTTCAATTCTCGGTTGAGGAGACAGTAGT
CATCTTGGGTGCTCACACATTGGGAAGGTGCCGACTTGCTAACTCAGGTT
TTGAAGGGCGTTGGGTGAAAGGCAGTGTGAACAACATACCCCAAACTGAC
ATGTTAAACAATGAATACTACAAACAAATCAGAGGAAACTGGACACAGAT
GAGAATGTTGCTGAGTCTTGCTTCAAGTCTGGCTCTCTTATGTGTTGTTC
ATTGCTCACTATACCCAAGCCAACAAGATGTGTTAGAGGCTAAAGTTCAC
TTGGACACGATGATTGACAACACAATCATCAACAATAATGAAAAACTACT
GATAGCTGGGTTTGTACGTTTAGCATTCCACGATTGTGTCGGTGCTGGTG
GATGTGATGGTTGTATTGATCACAACAACCCTTCAAATGGTGGATTGAGT
TTCTATACTAGTAAATTGAATCCTGTATGGGAAGCACATGTGAGAGGCAA
AATGTCCAGAGCTGATTTTTACATGTTGGCTGGCTATGTTGCTTTACAAC
ACGCCTCTGATGGATTGACTGATCAGTTTACAGCCTTTCCAAAATTTGGA
CGACTAGATTGTCCGAGTACTACCGGGGATGAGGATATATCTGCTACATT
TCCCAAAGAAACAAACCAGTGAAGGCAAATGGCAATGGCAAAGACCTGGT
ACAACAGCCAACACAGATTTTGAACAACTCAGAAATTCAAAAAATCAACC
TAACATGTTCCTTAATGTAGATATGGCTATCGCTTGGGATCTGGACTCAA
ATGGTGGGCTGGACACAGATGACGGTCAAGCACAATGCGTTGTAGAAGTG
GAAAACAACCAATGTATCGCAACACCTTCTGTTCCATGCTGCAACAAAGC
CGATACAAATATAGGTTCAGTGCGACATGGGAACAAACTTTTTTTGAAGT
ACGTAAACGATAATGCAGTATTTGTCAGCAAGTTNGGGAACAACCTTTTT
TTGAAGTACGTAAACGATAATGCAGTATTTGTCAGCAAGTTCTCAGAAGT
TTTCGTTAAGATGACGGAAATTCGAGAAGTAGAGGAATTGCAAGATGTCT
TCAATTCAAATGATGCATTCGAACGCAAAGATGAAGGAAAAAGGGTGCAC
CACCACTCTCACCACCCCCACCACCACCCACACCACCATCCTCGTCATGA
TCATCCTCACCACCATCGTCATCACCATGGAAACAGAAGAATCGAGGACC
AGGATGACGAAGATGAGGACATCGAACAAATGCTTTACGATTTTCTTCAC
AATTAACAACATGGAATTTACCAGAAGCAAGCGATTTCTTTGCAGATAAC
TTTCAATTCTCGGTTGAGGAGACAGTAGTCATCTTGGGTGCTCACACATT
GGGAAGGTGCCGACTTGCTAACTCAGGTTTTGAAGGGCGTTGGGTGAAAG
GCAGTGTGAACAACATACCCCAAACTGACATGTTAAACAATGAATACTAC
AAACAAATCAGAGGAAACTGGACACAGATGAGAATGTTGCTGAGTCTTGC
TTCAAGTCTGGCTCTCTTATGTGTTGTTCATTGCTCACTATACCCAAGCC
AACAAGATGTGTTAGAGGCTAAAGTTCACTTGGACACGATGATTGACAAC
ACAATCATCAACAATAATGAAAAACTACTGATAGCTGGGTTTGTACGTTT
AGCATTCCACGATTGTGTCGGTGCTGGTGGATGTGATGGTTGTATTGATC
ACAACAACCCTTCAAATGGTGGATTGAGTTTCTATACTAGTAAATTGAAT
CCTGTATGGGAAGCACATGTGAGAGGCAAAATGTCCAGAGCTGATTTTTA
CATGTTGGCTGGCTATGTTGCTTTACAACACGCCTCTGATGGATTGACTG
ATCAGTTTACAGCCTTTCCAAAATTTGGACGACTAGATTGTCCGAGTACT
ACCGGGGATGAGGATATATCTGCTACATTTCCCAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042208XLOC_042208Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067596-proteinTCONS_00067596-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067596-exon-scaffold_471-1575043694:104724..105306TCONS_00067596-exon-scaffold_471-1575043694:104724..105306Clytia hemisphaericaexon
TCONS_00067596-exon-scaffold_471-1575043694:103953..104173TCONS_00067596-exon-scaffold_471-1575043694:103953..104173Clytia hemisphaericaexon
TCONS_00067596-exon-scaffold_471-1575043694:102657..103752TCONS_00067596-exon-scaffold_471-1575043694:102657..103752Clytia hemisphaericaexon
TCONS_00067596-exon-scaffold_471-1510915933:104724..105306TCONS_00067596-exon-scaffold_471-1510915933:104724..105306Clytia hemisphaericaexon
TCONS_00067596-exon-scaffold_471-1510915933:103953..104173TCONS_00067596-exon-scaffold_471-1510915933:103953..104173Clytia hemisphaericaexon
TCONS_00067596-exon-scaffold_471-1510915933:102657..103752TCONS_00067596-exon-scaffold_471-1510915933:102657..103752Clytia hemisphaericaexon
TCONS_00067596-exon-scaffold_471-1491911889:104724..105306TCONS_00067596-exon-scaffold_471-1491911889:104724..105306Clytia hemisphaericaexon
TCONS_00067596-exon-scaffold_471-1491911889:103953..104173TCONS_00067596-exon-scaffold_471-1491911889:103953..104173Clytia hemisphaericaexon
TCONS_00067596-exon-scaffold_471-1491911889:102657..103752TCONS_00067596-exon-scaffold_471-1491911889:102657..103752Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_471supercontigscaffold_471:102657..105306 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.125882	0.143214	0.356325	0.39509	1.01855	0.737802	0.620391	0.505046	0.353594	0.503681	0.233815	0.335347	6.59994	4.31823	0.10722	0.357975	7.35518	8.66884	4.25979	7.4915	0.223135	0.445244	0.168389	0.393661	0.202731	0.301554	0.373987	0.153511	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002016Haem_peroxidase_pln/fun/bac
IPR019793Peroxidases_heam-ligand_BS
IPR010255Haem_peroxidase
Vocabulary: Molecular Function
TermDefinition
GO:0020037heme binding
GO:0004601peroxidase activity
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO:0006979response to oxidative stress
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0006979 response to oxidative stress
molecular_function GO:0020037 heme binding
molecular_function GO:0004601 peroxidase activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067596 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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