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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067613 ID=TCONS_00067613|Name=TCONS_00067613|organism=Clytia hemisphaerica|type=transcript|length=1742bp
TTTTCTACCATTTGAAATATCTTTTATATAATAAAGCctattttttaaaa
gtaatatttgtataaaaagatatataaaattcaaaaaatttacaaaatgc
atatataaatttatttaatttatctGATAAAAATTCATGTTATATTAGGT
GTTctataaattttaaattaaagatATTTGTATAAAAAGATatatagaat
tcaaaaaatttacaaaatgcatatataaatttatttaatttatctGATAA
AAATTCATGTTATATTAGGTGTTCTATAAATTTTAAgttaaacaaaaatt
caaacaaaatattaTCTATAATATAATACGGTATCGAGAATCCAGAAAGT
TATTGTGCTATTGTGATTCAAAAATATTGCGAGACTgcaaaaaagtttaa
ttgaaAAAGATCAAGAGAGGTGATTAAAAAAGGACCCTATCCCGCATGAA
CGAGGGACGAGGTCCACTTCAAAATCattacatttttagaaaacagAGTT
CGTCAACAAGCTGTTGAACGGATTCGTAAACTTCATAATCTTCCACAAAA
TCACCCATCAATTCCTCATCATTCTCCATCAGCGTTGGGGACAATGGACT
TGCCAGGGAACTGATGCTGGACGAACTATCAGTATGATCTTTCCCGTGAA
GTTTGGTATTGTGTATAGAACCATAATGATGCACCAAATCAACCAGACAC
TCAAAATAAAAAGCACAGCCTTGAATATGAAAGCCTTTCTCTGCTTCTTT
GACCGTGCAATCCATCAGCCCTTCTGCATTGATGTGAAtgggaactttca
aaaagaaGGAATAACTATTTTCCCTGGTAACACTAGGCACAACAAAATAA
CTACCAATAGACGCGTTGGCTAGATTCTTCTTGGCCGTGGCAGGCGAAGT
ATCATGAGAAAGGAGCCAAGTGTATTCTTCCAGTTTGTGTTTCGATTGCT
CCTCCAATACTTCTGTTGTATAATATTCATCCACTGTTTCGAAATGTAGA
GCACCTTCGTATTTGATCATCGATTCTGAACAGTAAAACTCATTTGTCAC
CGAGTAGACATCTTCAAACTCGATAATGTCATACTCATGAAGGTATCCTT
GCGTTTCATCCTTCTCATCGTTGCTTTCATCTGGCTTTGGTTGAACTTct
tttgttggattttttattttgtctttaattttcatgacgtaatccaaCTT
ATCATGACCTAAATGATGTTCAGATTTAGACCATCTCTTTGACGACAAGC
GCTGGTTGAAACCAAAACTATCGTATTCCTCGAAACTAATATTTCTCAAC
AAGAAGGTGGACGCATTAAAAGCACATTGTATCTTCTCGTTCAGTAGGTG
TAAATCATTTGATCGATATAATTTGAAGGCGTGAGCTTGGCAGACCACAA
TATTTTCAACGGAGTACGACTTGGTGACGTATGCAAAAAGATGTTTAGAC
GGCAAACATGATGAGAAGAGAATGTGAGCGATGCCATGACCAAGCTTCGC
CACTTTCTTACGGTAAATCTTCACCCCAATGGTGGTGATCACAATTTTCA
CGTGTAAACCATGCTTTACGTTTTCAACACTCATCAACTTATCATTAATG
AAATCTTTTTGGTGAGCACCTTGAAAGAAGGGCACATCAATGGACCCAAT
ATAATCACATTTCTTTTTGATCAATACATTACTATTACCTGTACACATAA
TTCGTTAACCTCTGCttactttttctcatttttatttttcta Run BLAST on NCBI protein sequence of TCONS_00067613-protein >TCONS_00067613-protein ID=TCONS_00067613-protein|Name=TCONS_00067613-protein|organism=Clytia hemisphaerica|type=polypeptide|length=406bp
MCTGNSNVLIKKKCDYIGSIDVPFFQGAHQKDFINDKLMSVENVKHGLHV
KIVITTIGVKIYRKKVAKLGHGIAHILFSSCLPSKHLFAYVTKSYSVENI
VVCQAHAFKLYRSNDLHLLNEKIQCAFNASTFLLRNISFEEYDSFGFNQR
LSSKRWSKSEHHLGHDKLDYVMKIKDKIKNPTKEVQPKPDESNDEKDETQ
GYLHEYDIIEFEDVYSVTNEFYCSESMIKYEGALHFETVDEYYTTEVLEE
QSKHKLEEYTWLLSHDTSPATAKKNLANASIGSYFVVPSVTRENSYSFFL
KVPIHINAEGLMDCTVKEAEKGFHIQGCAFYFECLVDLVHHYGSIHNTKL
HGKDHTDSSSSISSLASPLSPTLMENDEELMGDFVEDYEVYESVQQLVDE
LCFLKM Run BLAST on NCBI transcript from alignment at scaffold_471:230881..232622 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067613 ID=TCONS_00067613|Name=TCONS_00067613|organism=Clytia hemisphaerica|type=transcript|length=1742bp|location=Sequence derived from alignment at scaffold_471:230881..232622 (Clytia hemisphaerica)
tagaaaaataaaaatgagaaaaagtaaGCAGAGGTTAACGAATTATGTGT
ACAGGTAATAGTAATGTATTGATCAAAAAGAAATGTGATTATATTGGGTC
CATTGATGTGCCCTTCTTTCAAGGTGCTCACCAAAAAGATTTCATTAATG
ATAAGTTGATGAGTGTTGAAAACGTAAAGCATGGTTTACACGTGAAAATT
GTGATCACCACCATTGGGGTGAAGATTTACCGTAAGAAAGTGGCGAAGCT
TGGTCATGGCATCGCTCACATTCTCTTCTCATCATGTTTGCCGTCTAAAC
ATCTTTTTGCATACGTCACCAAGTCGTACTCCGTTGAAAATATTGTGGTC
TGCCAAGCTCACGCCTTCAAATTATATCGATCAAATGATTTACACCTACT
GAACGAGAAGATACAATGTGCTTTTAATGCGTCCACCTTCTTGTTGAGAA
ATATTAGTTTCGAGGAATACGATAGTTTTGGTTTCAACCAGCGCTTGTCG
TCAAAGAGATGGTCTAAATCTGAACATCATTTAGGTCATGATAAGttgga
ttacgtcatgaaaattaaagacaaaataaaaaatccaacaaaagAAGTTC
AACCAAAGCCAGATGAAAGCAACGATGAGAAGGATGAAACGCAAGGATAC
CTTCATGAGTATGACATTATCGAGTTTGAAGATGTCTACTCGGTGACAAA
TGAGTTTTACTGTTCAGAATCGATGATCAAATACGAAGGTGCTCTACATT
TCGAAACAGTGGATGAATATTATACAACAGAAGTATTGGAGGAGCAATCG
AAACACAAACTGGAAGAATACACTTGGCTCCTTTCTCATGATACTTCGCC
TGCCACGGCCAAGAAGAATCTAGCCAACGCGTCTATTGGTAGTTATTTTG
TTGTGCCTAGTGTTACCAGGGAAAATAGTTATTCCttctttttgaaagtt
cccaTTCACATCAATGCAGAAGGGCTGATGGATTGCACGGTCAAAGAAGC
AGAGAAAGGCTTTCATATTCAAGGCTGTGCTTTTTATTTTGAGTGTCTGG
TTGATTTGGTGCATCATTATGGTTCTATACACAATACCAAACTTCACGGG
AAAGATCATACTGATAGTTCGTCCAGCATCAGTTCCCTGGCAAGTCCATT
GTCCCCAACGCTGATGGAGAATGATGAGGAATTGATGGGTGATTTTGTGG
AAGATTATGAAGTTTACGAATCCGTTCAACAGCTTGTTGACGAACTctgt
tttctaaaaatgtaatGATTTTGAAGTGGACCTCGTCCCTCGTTCATGCG
GGATAGGGTCCTTTTTTAATCACCTCTCTTGATCTTTttcaattaaactt
ttttgcAGTCTCGCAATATTTTTGAATCACAATAGCACAATAACTTTCTG
GATTCTCGATACCGTATTATATTATAGAtaatattttgtttgaatttttg
tttaacTTAAAATTTATAGAACACCTAATATAACATGAATTTTTATCaga
taaattaaataaatttatatatgcattttgtaaattttttgaattctata
tATCTTTTTATACAAATatctttaatttaaaatttatagAACACCTAATA
TAACATGAATTTTTATCagataaattaaataaatttatatatgcattttg
taaattttttgaattttatatatctttttatacaaatattacttttaaaa
aatagGCTTTATTATATAAAAGATATTTCAAATGGTAGAAAA Coding sequence (CDS) from alignment at scaffold_471:230881..232622 >TCONS_00067613 ID=TCONS_00067613|Name=TCONS_00067613|organism=Clytia hemisphaerica|type=CDS|length=1221bp|location=Sequence derived from alignment at scaffold_471:230881..232622 (Clytia hemisphaerica)
ATGTGTACAGGTAATAGTAATGTATTGATCAAAAAGAAATGTGATTATAT
TGGGTCCATTGATGTGCCCTTCTTTCAAGGTGCTCACCAAAAAGATTTCA
TTAATGATAAGTTGATGAGTGTTGAAAACGTAAAGCATGGTTTACACGTG
AAAATTGTGATCACCACCATTGGGGTGAAGATTTACCGTAAGAAAGTGGC
GAAGCTTGGTCATGGCATCGCTCACATTCTCTTCTCATCATGTTTGCCGT
CTAAACATCTTTTTGCATACGTCACCAAGTCGTACTCCGTTGAAAATATT
GTGGTCTGCCAAGCTCACGCCTTCAAATTATATCGATCAAATGATTTACA
CCTACTGAACGAGAAGATACAATGTGCTTTTAATGCGTCCACCTTCTTGT
TGAGAAATATTAGTTTCGAGGAATACGATAGTTTTGGTTTCAACCAGCGC
TTGTCGTCAAAGAGATGGTCTAAATCTGAACATCATTTAGGTCATGATAA
Gttggattacgtcatgaaaattaaagacaaaataaaaaatccaacaaaag
AAGTTCAACCAAAGCCAGATGAAAGCAACGATGAGAAGGATGAAACGCAA
GGATACCTTCATGAGTATGACATTATCGAGTTTGAAGATGTCTACTCGGT
GACAAATGAGTTTTACTGTTCAGAATCGATGATCAAATACGAAGGTGCTC
TACATTTCGAAACAGTGGATGAATATTATACAACAGAAGTATTGGAGGAG
CAATCGAAACACAAACTGGAAGAATACACTTGGCTCCTTTCTCATGATAC
TTCGCCTGCCACGGCCAAGAAGAATCTAGCCAACGCGTCTATTGGTAGTT
ATTTTGTTGTGCCTAGTGTTACCAGGGAAAATAGTTATTCCttctttttg
aaagttcccaTTCACATCAATGCAGAAGGGCTGATGGATTGCACGGTCAA
AGAAGCAGAGAAAGGCTTTCATATTCAAGGCTGTGCTTTTTATTTTGAGT
GTCTGGTTGATTTGGTGCATCATTATGGTTCTATACACAATACCAAACTT
CACGGGAAAGATCATACTGATAGTTCGTCCAGCATCAGTTCCCTGGCAAG
TCCATTGTCCCCAACGCTGATGGAGAATGATGAGGAATTGATGGGTGATT
TTGTGGAAGATTATGAAGTTTACGAATCCGTTCAACAGCTTGTTGACGAA
CTctgttttctaaaaatgtaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067613-exon-scaffold_471-1491911889:230881..232622 | TCONS_00067613-exon-scaffold_471-1491911889:230881..232622 | Clytia hemisphaerica | exon |
| TCONS_00067613-exon-scaffold_471-1510915933:230881..232622 | TCONS_00067613-exon-scaffold_471-1510915933:230881..232622 | Clytia hemisphaerica | exon |
| TCONS_00067613-exon-scaffold_471-1575043694:230881..232622 | TCONS_00067613-exon-scaffold_471-1575043694:230881..232622 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_471 | supercontig | scaffold_471:230881..232622 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000980 | SH2 |
Blast
The following BLAST results are available for this feature:
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