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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067671 ID=TCONS_00067671|Name=TCONS_00067671|organism=Clytia hemisphaerica|type=transcript|length=2799bp
NCTTTGTCTTTATCATCAGTATGTGTTCTGGAAAATGTGGAAAGCAAGAG
CCAAAGGTTCAACTAATTTTGGTCAGAAGCCAAAGAACGTCAAATGAAGT
TGTCAACATCAAGTCTGGTTTGTTACCGTTATGATTGCTATTTGCATTCA
CAACATCTTGATCGACATGATTCCAACCGCCTTAATAACAATCCAAATGG
TTTAATTACCTACCAACAAACAGCCAATGGCATCATCAAGACTGGATGTG
TAAACCAGGAAAGATTTCTTTCTGTGTTTTATATTCCAACCTTTTAGTCT
GGGGAAATCATTTTGATGCTTGTTAAGTTTGCTCAGGCTTTTTCTATTTT
GCCTTCTTATAGCAAGCCTGCATTACCTCCTTGCCCTAGGAATGGGAATT
GTTGCTCCATAGCAAATTGATTCCTATCACCATGAAATACAATCATGCCT
ACAATTTAAATGTGTTAAATTTGATAATATTGGAAATCGATTTGTTATAA
ATGCCATAATTCGTGCTGAAAAGTGGACACAATTGGGACATACTGTACAT
TTATTCAAGAAATCAATCAATTTCTTCTTTGCTGGTTAATTTCTTAGTAA
AATGCCAATGGTAGGACATTTTAGAATATTCATATTAAAGTATTCTCGTC
ATGCTTCTATCTATTCTTGATTAGAAAACGATACAAATTTTATGATGCTG
GGTTATTAAAGTGTACAATCGAATATATTTGCCAAGTATCTCTAATAGAG
CTGCTTTATGTAGACAAGTCTCAAAGAGGTTATCAAAGTGGCCGATGTAA
CAAAGCTGTGAAAACCATTATTATGTATGCTCAACATCCTCCAGTTGCTT
TGTTGATCTTCAAAATTCTGATTGAAGACACCTTGgatctaaaaattttg
gatagGTTTGATATCTTCCCATCCAGTGTTTCATTAGGAGTTAGCAGAAG
GTTATAAATGATTATTGAAGCTCAAACAAAGAAATTCAATGCAGAACTGA
GCTTTTATCACACATTTGGCTGGTTACaataaaattgcaaattttataGA
ATGAAATAATGGATTGGTCAATGAGTTATGGAAGCAAATAACCAGGTTTT
CTACTAAATTGATATTTCTTAacgttttttaaataatgtGTTGTGCTCAA
ATTCGAAAGATTTTAGTTTCTTTTTAGGAAGAAAATGATATTGAATAAAC
CAGTCTTGAAATTTTTCTACTGTTAGTATCTTGACTCTTATTTCATTATA
CTGTCAAAAGGGATTGAATCCATGCCAATTTTTGTGTCCTTAATTTCAGT
TATCAACCATTGTGATCAATGCATTCTCCATGAAATATTCACCAATGCAG
TTcaagtttttatttgttttcaattatgTTTGAAATAAGATGGTTCTTAT
GTTTTGGATTAAGATGGTTGATATATGGACAAGACTTATTCATGAAAAGT
CGCCATTTTGGTACTAAggaattggaaaatttgaagTAACTTCAACAGGC
ACCAACATTCAGTGATATTTTTACCGCTggtcatcaaaaatttctcttcc
TCTACTTCTATCGACCACACCTTCCTCAGAGCCTGGTCTGTTTGTAATGT
ATCAAAAAATTTAGTGGTGTCAAATGCGCTGATGATTTTAAATGCCTTAA
GAAGGATATCCCTATCGCAATGTCTAAGAAGCATACCTTTCGTCAAGTGC
TCTTCGTGTTTTTGGGGTCGAAATCTTGCTAACAGACTTTTCAATAGGAC
AAACAAGTTTAATCACCCAAAGTTGATCAGCACGATTGAGCAATTAAAAA
GAAGAGTGTAAGAAAGAAAAACTCCATTTGTGATCGTTGCACAGCAAAAG
AAAGTTACGtgagaaaaagtttctttaattttcaaatttgttttctaCTT
TTGAtcagattcttgttgtaaaatcgaaatttaacaTTGTGCGAGTAAAA
GCTTGTGACTGTCCGTTAAAACACATAAGAGTAGGCTGTATTCCATGTCT
TGCTTCTAGTCTGTTTCTTAGCCAGCAAAccgtcatcaaattttatgatc
CAGAGCCAAAAGCTATCAACCATTCGTTTGCAAAACATCCCTCATGAAAA
AGAACGCGTAAAGATTCAAACCATTCAAAGAGAGAGGTGACCCATTTGAC
TTTAAACATTTAGGAGGACCTCCTAAAGCATTTTGTTGAATTAGCAAGGC
ACAGATAATCAATACCTGAAAAGAAACCAATCACTATTTCTATCGCTGCC
AGTATGTTGACGAAATCAGTCCTAGAATAGTTAGAAAAGCTGAACAAAAT
CCTTGAACAAAGTCGATCATTTGTGGCCTTTTGTGGTGTTTGCTTTCCAT
CCAGTGTATCATTAGGATCAAAAAAAGGAGTTCAAAGTCAATGCAAAGCT
GCTATGAAGAATGTAACTTGCAGAGCTTACAGTTTACCACTCATTTGGTT
GTCTTACAATGAGATTTCAAGTTCCGTAGAATGCAATGAGAGAGGTCAAG
ACCGTTCAAAAGCAAATTATCAGGTTTTACAATTATTTATTTCAACTTCT
TGAGAAATACCtttcaacaacttttttttttttctttttttttgacatcG
AAAATTGGATCTTGAAGAATTTTGTTTACAAGAGAATATAGAAAGGGGTT
TGGGGTGGGCTAACTGTATGCCATGTTTTGTTCTGTACTAAATTTCAGTA
GTCATTTGGCTTGATCAATGAATCCATCTGAAAAGTAACCGCTTTGGGAC
TTGGGAATTACGACTTAAGGGTGAATCCAACCGACACCGTCACCTGGTG Run BLAST on NCBI transcript from alignment at scaffold_472:414888..420161+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067671 ID=TCONS_00067671|Name=TCONS_00067671|organism=Clytia hemisphaerica|type=transcript|length=5274bp|location=Sequence derived from alignment at scaffold_472:414888..420161+ (Clytia hemisphaerica)
NCTTTGTCTTTATCATCAGTATGTGTTCTGGAAAATGTGGAAAGCAAGAG
CCAAAGGGTAAGAATTATACAAAACCGAAATTTATGCTATCTTCTTTAAT
CTTCAAACGAAGAGAAAACCGGCAAAAGAAAGGCATAAATCTTTTTCTTG
ATGCAGTACTCTCTAACTCAATTCATTCTGTTCAAAATGAAGCCAAACTT
TATAAACAGAAAAGACGTCAGGTTATAACAGAGCGCTCTATTAaagagaa
aaactttgaaaacgaaAAAGCAAATGAAGAAGAAATCGAAAGGATTTGTG
GCATTGATAGTTTCTTTAATGAACTTCAGAGTGTGAGATTGGATAAAAAA
AACTACAGTGGTGAAAATAATCTCTCAACAGAAACTTATATACATGACAC
TGATTGTGAAATTAATAACATGGTTTCCAACTTCATCGAAAATGGTTCTC
TAGGCTGAAGTATAGGTGTAGCTTCATTAATCTTGTGAAGAGGGAGAATT
GTTCTCTCATTTTCACCATTAACATCATAAAACAGTAGTTTCAATCTTGC
TGCTTACATCTTTTCACTAAATTGTTGGTGTACTATCAATTTAACTGATA
ACAAGGACGTGGAGAAATTAAATCCTACCAGACATAGGAATATAGGAGAG
AATTAAAAATTGGTGTCCAAGTGATCTCTGGTTTTtgcattttgtttgtt
ttggacaGTTCAAAAAGTTATTCCAGACGAATCAAAAGTCTTCTCAATTT
TAGAATTGACAAGTTACAAGTTGAATGAATTCATATTTCTGGTGTTGGAT
CACCAGATTATTtgcttaatttttatttttgttactaTATTGCCACATAC
CATTGATTGGTACTGTTACTATGCTTGAGGTAACTTACATTATGTCTTCT
ACGGTACATCAAACTCATCTAGTCTGTAAGTTTTAGAATGAACAAGTAAT
GTTGTTACCTTAatagggaactaattttgataAGATTTAGTTCTCAccaa
aataaaagttgattttccaaaataactCCTTAGTTAGTCTACGACTGAAT
TTGTACAATGGAGTGTTTATCTAACCTTCTCAGTACCATGGCTTTGTGGT
CCAGTGGTGTGTAAAACTAACCTTTTATTAAACTGCTCAATTTCAGGCAA
AATCAAATTTACCCTGCCGTTTACTAATTTCAGCAGATTTTGCTGAATTA
GCATCATAAGTTTTatgattcaaaaaacattttgaccaatatttttcagc
ataagcTTTTTGTTTAgttaaaaaacatcatcagtgcATATACAAGTAAA
acgtacaaaaattttctgaaaagccCTTTTCTTCGTCTAAATCATTTTAT
CGCAGAAATGAATGCCAAAATTATAACTTCCCCTCATCACATAATTATTA
TCaatacatttgatattttgaagGTTTTCGCTTTTCACAGAAATAAGCTT
CTTTTAAGGTATCCGCGTGATGTACTTCAAAAGTGACTTTTAAAATCAAG
GGCCAAGGAATGGTTTGATTTGAAGACTATGAAAGTGAACCTCAATTAAT
GAAATAAGCATTATAAATAACACCAATCAAGGAAAGGTATCTTGTTGGCT
TTTTTAATAGGTCGGTCATTGTATTGTTTCTAGTATTTATGAATTGACTC
AAGATTCTTATTCAAActtaaatgttattttctcttgATTAGTTCAACTA
ATTTTGGTCAGAAGCCAAAGAACGTCAAATGAAGTTGTCAACATCAAGTC
TGGTTTGTTACCGTTATGATGtaataattattttaattttaatcattttt
cggacgattttacaaaaactttttttcctaatcAATCTCTAAAGTTTACT
TGTTCATCTATTCTTAACCAATTCATTTCTTTTGAATGTTAGTGCTATTT
GCATTCACAACATCTTGATCGACATGATTCCAACCGCCTTAATAACAATC
CAAATGGTTTAATTACCTACCAACAAACAGGTTTGTATGAATATAATAAT
TCTTTGTTCACTTAGGAACCTTAGCAtggtatacatgttttttttataag
caagtgtctgcccctatatcagactcgcattatgcttagcattatattgt
tctcaaacaatagagccattgtttaggtacctaAAACTGAGCCTGTATAT
GCTTGTagacgttatgcttataaaagaaaaaaacatgtagcatTGCTGCA
AAGTGCATAATTGATCATTAAAGtcctaaataattttttatccCAACATC
AGtttcttttcaaattgaattccaaaaaatgtcaaaagacaacttttaac
atgttTACTGCCATTAAAGAAGCCCTAATGATGTAAACACAATCTCACAG
TAGAGAGAAAATCGTCCACAAAATTAAGTAGTCTCGTTAAATCTTGGATG
AGCTCAATTGCAAAATTTAACCCCGCAAAAATTTATCACTAAAGAGTACT
ACATACCCAaatcaataaatattttaataagaGGTTTATGTTTCTTACAA
AAGGGTTTAGAAAAATGCTATTTACACCAAAACAATGCTATTTATGTTAG
ATTTTAGGATATTTTTTGTGCTAattaaaattgaataactttatGAAGTG
ATTCATTAAATGAGTTATTAATATTTGAATAGTGTCAAGAAAGATTATTA
AGTTTTATGTAAAGAttatttataaatttcatttttttccatttacaGCC
AATGGCATCATCAAGACTGGATGTGTAAACCAGGAAAGATTTCTTTCTGT
GTTTTATATTCCAACCTTTTAGTCTGGGGAAATCATTTTGATGCTTGTTA
AGTTTGCTCAGGCTTTTTCTATTTTGCCTTCTTATAGCAAGCCTGCATTA
CCTCCTTGCCCTAGGAATGGGAATTGTTGCTCCATAGCAAATTGATTCCT
ATCACCATGAAATACAATCATGCCTACAATTTAAATGTGTTAAATTTGAT
AATATTGGAAATCGATTTGTTATAAATGCCATAATTCGTGCTGAAAAGTG
GACACAATTGGGACATACTGTACATTTATTCAAGAAATCAATCAATTTCT
TCTTTGCTGGTTAATTTCTTAGTAAAATGCCAATGGTAGGACATTTTAGA
ATATTCATATTAAAGTATTCTCGTCATGCTTCTATCTATTCTTGATTAGA
AAACGATACAAATTTTATGATGCTGGGTTATTAAAGTGTACAATCGAATA
TATTTGCCAAGTATCTCTAATAGAGCTGCTTTATGTAGACAAGTCTCAAA
GAGGTTATCAAAGTGGCCGATGTAACAAAGCTGTGAAAACCATTATTATG
TATGCTCAACATCCTCCAGTTGCTTTGTTGATCTTCAAAATTCTGATTGA
AGACACCTTGgatctaaaaattttggatagGTTTGATATCTTCCCATCCA
GTGTTTCATTAGGAGTTAGCAGAAGGTTATAAATGATTATTGAAGCTCAA
ACAAAGAAATTCAATGCAGAACTGAGCTTTTATCACACATTTGGCTGGTT
ACaataaaattgcaaattttataGAATGAAATAATGGATTGGTCAATGAG
TTATGGAAGCAAATAACCAGGTTTTCTACTAAATTGATATTTCTTAacgt
tttttaaataatgtGTTGTGCTCAAATTCGAAAGATTTTAGTTTCTTTTT
AGGAAGAAAATGATATTGAATAAACCAGTCTTGAAATTTTTCTACTGTTA
GTATCTTGACTCTTATTTCATTATACTGTCAAAAGGGATTGAATCCATGC
CAATTTTTGTGTCCTTAATTTCAGTTATCAACCATTGTGATCAATGCATT
CTCCATGAAATATTCACCAATGCAGTTcaagtttttatttgttttcaatt
atgTTTGAAATAAGATGGTTCTTATGTTTTGGATTAAGATGGTTGATATA
TGGACAAGACTTATTCATGAAAAGTCGCCATTTTGGTACTAAggaattgg
aaaatttgaagTAACTTCAACAGGCACCAACATTCAGTGATATTTTTACC
GCTggtcatcaaaaatttctcttccTCTACTTCTATCGACCACACCTTCC
TCAGAGCCTGGTCTGTTTGTAATGTATCAAAAAATTTAGTGGTGTCAAAT
GCGCTGATGATTTTAAATGCCTTAAGAAGGATATCCCTATCGCAATGTCT
AAGAAGCATACCTTTCGTCAAGTGCTCTTCGTGTTTTTGGGGTCGAAATC
TTGCTAACAGACTTTTCAATAGGACAAACAAGTTTAATCACCCAAAGTTG
ATCAGCACGATTGAGCAATTAAAAAGAAGAGTGTAAGAAAGAAAAACTCC
ATTTGTGATCGTTGCACAGCAAAAGAAAGTTACGtgagaaaaagtttctt
taattttcaaatttgttttctaCTTTTGAtcagattcttgttgtaaaatc
gaaatttaacaTTGTGCGAGTAAAAGCTTGTGACTGTCCGTTAAAACACA
TAAGAGTAGGCTGTATTCCATGTCTTGCTTCTAGTCTGTTTCTTAGCCAG
CAAAccgtcatcaaattttatgatcCAGAGCCAAAAGCTATCAACCATTC
GTTTGCAAAACATCCCTCATGAAAAAGAACGCGTAAAGATTCAAACCATT
CAAAGAGAGAGGTGACCCATTTGACTTTAAACATTTAGGAGGACCTCCTA
AAGCATTTTGTTGAATTAGCAAGGCACAGATAATCAATACCTGAAAAGAA
ACCAATCACTATTTCTATCGCTGCCAGTATGTTGACGAAATCAGTCCTAG
AATAGTTAGAAAAGCTGAACAAAATCCTTGAACAAAGTCGATCATTTGTG
GCCTTTTGTGGTGTTTGCTTTCCATCCAGTGTATCATTAGGATCAAAAAA
AGGAGTTCAAAGTCAATGCAAAGCTGCTATGAAGAATGTAACTTGCAGAG
CTTACAGTTTACCACTCATTTGGTTGTCTTACAATGAGATTTCAAGTTCC
GTAGAATGCAATGAGAGAGGTCAAGACCGTTCAAAAGCAAATTATCAGGT
TTTACAATTATTTATTTCAACTTCTTGAGAAATACCtttcaacaactttt
ttttttttctttttttttgacatcGAAAATTGGATCTTGAAGAATTTTGT
TTACAAGAGAATATAGAAAGGGGTTTGGGGTGGGCTAACTGTATGCCATG
TTTTGTTCTGTACTAAATTTCAGTAGTCATTTGGCTTGATCAATGAATCC
ATCTGAAAAGTAACCGCTTTGGGACTTGGGAATTACGACTTAAGGGTGAA
TCCAACCGACACCGTCACCTGGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067671-exon-scaffold_472-1491911889:414888..414944 | TCONS_00067671-exon-scaffold_472-1491911889:414888..414944 | Clytia hemisphaerica | exon |
| TCONS_00067671-exon-scaffold_472-1510915933:414888..414944 | TCONS_00067671-exon-scaffold_472-1510915933:414888..414944 | Clytia hemisphaerica | exon |
| TCONS_00067671-exon-scaffold_472-1575043694:414888..414944 | TCONS_00067671-exon-scaffold_472-1575043694:414888..414944 | Clytia hemisphaerica | exon |
| TCONS_00067671-exon-scaffold_472-1491911889:416580..416657 | TCONS_00067671-exon-scaffold_472-1491911889:416580..416657 | Clytia hemisphaerica | exon |
| TCONS_00067671-exon-scaffold_472-1510915933:416580..416657 | TCONS_00067671-exon-scaffold_472-1510915933:416580..416657 | Clytia hemisphaerica | exon |
| TCONS_00067671-exon-scaffold_472-1575043694:416580..416657 | TCONS_00067671-exon-scaffold_472-1575043694:416580..416657 | Clytia hemisphaerica | exon |
| TCONS_00067671-exon-scaffold_472-1491911889:416780..416867 | TCONS_00067671-exon-scaffold_472-1491911889:416780..416867 | Clytia hemisphaerica | exon |
| TCONS_00067671-exon-scaffold_472-1510915933:416780..416867 | TCONS_00067671-exon-scaffold_472-1510915933:416780..416867 | Clytia hemisphaerica | exon |
| TCONS_00067671-exon-scaffold_472-1575043694:416780..416867 | TCONS_00067671-exon-scaffold_472-1575043694:416780..416867 | Clytia hemisphaerica | exon |
| TCONS_00067671-exon-scaffold_472-1491911889:417586..420161 | TCONS_00067671-exon-scaffold_472-1491911889:417586..420161 | Clytia hemisphaerica | exon |
| TCONS_00067671-exon-scaffold_472-1510915933:417586..420161 | TCONS_00067671-exon-scaffold_472-1510915933:417586..420161 | Clytia hemisphaerica | exon |
| TCONS_00067671-exon-scaffold_472-1575043694:417586..420161 | TCONS_00067671-exon-scaffold_472-1575043694:417586..420161 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_472 | supercontig | scaffold_472:414888..420161 + |
Blast
The following BLAST results are available for this feature:
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