TCONS_00067678 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067678
Unique NameTCONS_00067678
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1988

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067678 ID=TCONS_00067678|Name=TCONS_00067678|organism=Clytia hemisphaerica|type=transcript|length=1988bp
caaaaattcaaaacaaaccaataGATCGTACTCGGTAGTGTACCCTGACG
TAATTGATTTTACTTGGGCGTCTTGTTTCGTCAGTGTAACAAAATGGcga
atttttaaataaatattgTTGACACTTTAAATCTATTTACATCATCGCTA
TCTCTATTTTACTGGTAAATCTTGGGACAAAAAATTGATCATCGAACATT
GGACATTCTAGCAGGGCTATGATTTTTAACCGTTGAAACACTCAAGAcat
tattttgtaaataaaaagagGGTGATATCCCACTGTTCGATTTAAAAGGA
CTTTGTTTTTGAAGATTATTGTACGATATTTTTGGCCACAATGGCAAGCA
AAGATGATGAATATGATTATTTGTTTAAAGTTGTTCTGATTGGAGATTCT
GGTGTTGGTAAATCTAACCTTCTCTCGCGATTCACACGAAATGAATTCAA
TCTGGAATCCAAGTCAACAATCGGTGTTGAATTCGCCACAAGGAGTATCC
AAGTTGGTGGAAAAGTTATAAAAGCACAAATTTGGGATACAGCTGGTCAA
GAAAGATACAGAGCCATTACTAGTGCATATTACAGAGGAGCTGTTGGAGC
TCTATTAGTTTACGACATCGCAAAACACATAACTTACGAAAATGTCGAAA
GGTGGCTAAAAGAATTGCGAGATCACGCTGATGCAAATATAGTTATTATG
CTGGTCGGAAACAAATCTGATTTGAGACATTTAAGGGCAGTACCAACAGA
AGAAGCCAAAGCTTTCGCCGaACGAAATGAATTATCCTTTATCGAAACCT
CTGCGTTGGATTCCACTAATGTCGAAGTAGCTTTTAGGAATATTCTGGAA
GaaatttaTCACATCGTCTCACAAAAGCAAATTCGTGACGCTAACAGTTC
TTCTGGACCACAACCGAACGAGTACACTCAAACCATCCAAGTTGCTCCTA
CCGAATCAGACACTAAAAAACAAGTCAAATGTTGCCAATAATAAAAGACT
TGAATACAATTCCTCGTGATTCTGTTTGGACCTAAATTCAATCAGTCAAT
CTTTAAACTTTTAGGTTCCAAAGGTTGCTTTGGTGCAATTTTGAGCGATC
GTAAATTCAATTTTaccatttgaaaaaagaattgctTGAAATTCTTACAC
ATTTTTCCATTTGAAAGCTGTAGCGACTGGTAGACTGAAGAGGGCTGCAA
AATATTGGGAAACTACTCTTCCATCAAGCAAAACACCTATCGTTTAATTT
TAAATACTTCGTGATTCgcaaatttttttctgtttttgtttcttttcttt
ttttcaatcgaATTTTTTACACgtcactttttataagaaacaaaaagaat
tgCTTACGTTAGTTGTGAATATCTAATAGAAATTATTATTTCTAGTACAG
TagtaatttaggctattttttccCTTTTCTTTTAGATAAAGTAAGCAAAT
TGAATCAAGTACTGACTAATAGAAATCTCCACATATTCGCTGTATTATTT
TAAGTTTTGTTCCGTTTTACTaatttatgttaatttcagGTACTTGATTC
TTTATTTCGTCTGTCGAAGCGTTGAAAATCTGCTCATTCATCAATTAAAC
CACACCCTTCTCAAAATGTAATTTAAAATTCGGAGATGCCTTGgaatttt
tacaagatgcttaactgattggttatttttNttctcaatcgcgaaattaa
ttccgtgaaacttttgaaatcggctcattcgcgaaatttgccattttgaa
actctgattcgcgaaattaaattccgcgaaaatttcttccctttatAAGG
TATTagagagtttatgtatgtgtgtttttcagcgacggagacggtaaggt
tctaatttgagtagatcatgaccaactgaggacgacggtaaatcagcact
tttaccgtcctcgattttgcggggcggaattgcgggtttttccaaatcgc
ttcagtcactctaccgtcctcaaaagtgcaaatacata
Run BLAST on NCBI

protein sequence of TCONS_00067678-protein

>TCONS_00067678-protein ID=TCONS_00067678-protein|Name=TCONS_00067678-protein|organism=Clytia hemisphaerica|type=polypeptide|length=216bp
MASKDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFAT
RSIQVGGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHITYE
NVERWLKELRDHADANIVIMLVGNKSDLRHLRAVPTEEAKAFAERNELSF
IETSALDSTNVEVAFRNILEEIYHIVSQKQIRDANSSSGPQPNEYTQTIQ
VAPTESDTKKQVKCCQ
Run BLAST on NCBI

transcript from alignment at scaffold_472:23006..33422-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067678 ID=TCONS_00067678|Name=TCONS_00067678|organism=Clytia hemisphaerica|type=transcript|length=10417bp|location=Sequence derived from alignment at scaffold_472:23006..33422- (Clytia hemisphaerica)
CAAAAATTCAAAACAAACCAATAGATCGTACTCGGTAGTGTACCCTGACG
TAATTGATTTTACTTGGGCGTCTTGTTTCGTCAGTGTAACAAAATGGCGA
ATTTTTAAATAAATATTGTTGACACTTTAAATCTATTTACATCATCGCTA
TCTCTATTTTACTGGTAAATCTTGGGACAAAAAATTGATCATCGAACATT
GGACATTCTAGCAGGGCTATGATTTTTAACCGTTGAAACACTCAAGACAT
TATTTTGTAAATAAAAAGAGGGTGATATCCCACTGTTCGATTTAAAAGGA
CTTTGTTTTTGAAGATTATTGTACGATATTTTTGGCCACAATGGCAAGCA
AAGATGATGAATATGATTATTTGTTTAAAGGTAATTGGACTTATCCATCT
GTGACTGTATCATATCTGTGACTCTCCACCATTTGCAAGTTAGAAAACCT
GTGCTCACCTTCAGCAGCATATTACAAAGGGTTGCAACTTACTGTTTTGA
TGTTTGAAAAAGTTTTTGTCTGGCAGTATGAAGTCTGAGACATTCCTCAA
GTTAACTTTAAGTTTGGTCATTGCTAGGACTGCTAGACTGTAATAAAAGA
ATCCTTTGTGTACCGCCATGGTAAAAGATTGCACTGAACAGGAGGACAAA
GATTCAACTGCCACTTTTCTAGCAGAAAAAGACCAAAACTTTGGGTAGTT
GAAATTTTTTCAACCGTAGTCAACACAAGATTTTTTTGTACCTCTTCTCT
TGTAAAAATCCTTTCCGAACCATGTCTGTCAGATATCAAGGAAAAAATTA
CAGTAGCCGAAAATAAATTTCCAAAAAAGTCAGTGGGTTCTAGTTCCTAA
AAGGAAAGAAATTTAAAATATTAATATTCCCTCTTTAATGAGCTCTTCCA
GTGAAAGTCTATTACAGGGGGTGGACAACAGCAGAATTCCGAGGTAAAAT
GTTTCATGAAATTCCTGGATTTCCAATATTAACAAAAGCAATTGGAACTC
TTGGATTTCCCACATAAAATAGATTTTTTGGAATTTCTAACAAATTCTAT
GGAATTTCCAAAGGTTAAATTAAAAATTGAGTGGAATTAGTGGCTGAATA
CACCTTTCCCGTAATTCAAATTTCTCAGAAATGGCCTGGGAAAATGTGCG
CTCCACCGTTGTGTATAAAATTGTTTTTGCGTTTTTTACCTGCGGGGGTT
AGGGAAAGTGGGATTTGAGCCTCTAACTTTTGACAGCGACCTTCTTTTGG
CAAAATATTTTCAGGGTGGTATAATATCATGAATAGATCATGAACATACT
AAAATTTTGAGGGGATTTTGTTTGACAGAACTTAAGAAAAGCTAAAAAAA
CCAACTTTCCCTAAGGGAACACAGGTAAAAACGGGTTTGTTTACCTCCAG
AGACTAAACGGTGGAGAGCATCAAAATAATGCGCGCGCATTAGTTTTAAG
AATTACGGGAAAGGTGTATTGCCGTGGTGTAATTCCCTTAGAAAGTATGC
AAAACATATTAAGTATTAATAAGTATTAATATAAAACTTACATGCATAAT
TGGCATTATATTAAAGTGTAATTTTGTAAAAGAAAGATTAAATTTGCTTC
TCTTGAAAACTAAAACTAATTATATTCGCTCATCTCTTAGAACTTAAGCC
CTTCAAAAATCCATAACATTAGACATAAACTCAAACTGAAAAATCACCAG
CGAAGGTAAAAATTAATCCTTATTCGGCTGACGGTAAATTATTCTCCTGG
GAATAGAGCCGCCAAATGATCAAATCAAAACATTGATAATATGTGACATC
ATAATTACTGCTTTTCAGTTTGGGTGTTGTGAAAGTTTGATGTGTGTACT
CCGTCTTCGTGGAATTTCTTAATGGCATGAAAACAGAATATGCTATGTCT
TTAAGAACAAATTTCTAAAAGGCTTTTATTGTTCTGTAAATATTTCTTTT
TGGATTAAGGAATTCCATCTTTTATTGTTCTAATGATTATAATCTGTTAT
AATATTTATTTATAAGATGCTTTATTGTCTTTTTAATCTTTGCGTAAACT
TGCATATGTTTTGCATACATTCCAACTAAATCCAACCACAGCTTTTTGTG
TTCCTCTATTTTTGCATACAATTCAAGATGGCAGATGGAAAGGCGAAAAG
GTCTATTCCAGGCCTGATCAATCGAACTTGTCGAACGAATCGAACTCTGA
GATTTTTTAAAAGATTGTTGAGTGTTCAATTAAGTTCGATCAATGGGTTT
CAGCATGGTTTCTGCCCCCTCCCCTTAAAAAGGGGGAAGCAAAAAAATTA
CCTTTTTAAAAAGGGGGGATATTTGTAATTTTTTTTAAATAAGGGGGATC
CTTTATCAAGGGCTGCAAGAATGAAAAGAAGGGGGACTAAAATTTGAAAA
TTGTTGATTGAATTTCAGATGTTATGTCTTTGGTTTTATTGCAATAATTT
TCTTGATTTGATAATATCTTCTTTCACATTTTTGTGCTCACAATCTCATG
CCCACTTTTTTGCAGACCATGCTATATTGAAACTTATGCATNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNTGTGATTGTTTTGATTTACAGCCGCCATCTTTATAG
CATAACAACAAAGCTTATTAGCAGGCGTTCATGCGTGAGCATGATTTTAG
GAATGACAAAAGAACATGTGTCAATTCAAAGAAATTATCTGCTGAATTCG
GGTACCTAACTCAAAGCAATTTTTCAAGGGGACCTAAATTGCTGGGGGCA
CCATGCTCAATGGGGGCACCTGAAAAGTGGGCTGAAACCATGTGCATATT
AGAACAACTTTTAACAGACCAAACCAAACCATAAAATTAAGAAATAGTAT
TAAAGTATAAAATGTAGTAAAAAGTAGTATAAAAAGTAGTATTAAAATGA
TTATTTCTGTGAAAGATTATTTCTGTGACACATTTTTCACTTAATGCAAA
ATTAAAGTCTTTTTTATGTTGACAAAAAATTTTGAGAATTTCTTGTTTGC
AGCAAACAACTTTCCAACAGAAAATTTTTTCAAATTATAAATTTTTTAGA
TTTTTTGAGAAAAGTCATCCAAAAAGTTAAAAGAATTACAAAAATAGCTA
AAATTTGCTAATTATACCTCTTTGTACCTCTTTTTGGCTTTTGCTTGAAC
AGCTCATCCAACTCGTTGAGTCCGATGCTTCGACATTTCCTTGAGGCTGT
TGGAGTCAGCTTGCCTAAGGTTAAAATAGTGGGCTAGCAGAGGTTCGTCC
GGAACAGTTGTGAGGAAGGTGTCTAAGTGTTTTAAAGTTATGTCTGAGAT
TTTACTTTCGACCCCCCCCCCTGATTAGATAGTGTTTTATTAAGGTGTTT
TGAGGGTGTAAAAAGTGAAAACATTTTCTTCGTCTCCCAACCATGGTGGG
CGACATTTTTTTCAAAAATCTTGGTCCCCCACTCAAAATGGCTTGCATCC
TCTCTTCCCTCTCTCTATTGTAAAAAATTGTTTGCTGAAAGGTAGAAAAA
TTCTCTTGAAATAGTTGCTTGACATCATTGATCTTTGACATTTGCAGCAG
AGACTTATTTTTACAAGTTCTTTCACATCCAAAATCAATGGGGGGATGAC
ACCTTCCTAAAAAATGAAGAAGGGGTATCAGAAATTTTCATGAAAAAGGG
GGGATACTTTATAAAGAGGGGGCATACATACATATACATTGTAGATTATT
TTCAAGCACTGTTATGAAATTTAGTTTTCTGTTAGAATAGTCTTTGTCAA
AAAGAAGACAGAACTGTTTGTTTTTTTTGTATTTTGTTTGTTATTTTATT
TTTGTTGGACCACTTACAAGTCCCAGGGTGTCTACGGGACCTTGAAAACC
TTGAAAATGAACCACCTAACCTTGAAAACCTTGAAAACTATCAATTTTCT
GAGAAAAACCTTGAAAACATTGAAAAATCGTTAAAAACCTTGAAAAGCGC
TATCCAGTCATTCGAAAAGTAAGAATAAGTAAAAAACCACCTGCGGCGCT
AAACCTTTATAACATTTAGAGAATTCCATATTTCCCGATTCTGTTGCGAT
TCTGTTGCAACGAATGCAACATATTCTTTTACCATTAGCTGAGTTTTTGT
CACTAATTTTTCGTTCGCATGAGCCCTAAGAAATTGTTCCCCAATTTTCA
AATCGCTTCAGGGCGTCTGTGGAATAATGGCCGTTCATCAATAAAATTTT
GAGGATTCCTTAAAACAACTCGTTTGGCAATTGATTTTTGTAAAAAACAA
AATCAAAAACAAGGCGTTTTTTGGCCATTTGAAAGAGTCAAAATCAAGAT
TTTCTCTCGTCTGCGCAAACCATGGTTGCACCTCTTCGGTCACTGTAAAC
AATTGGTTTTGCTTCTAATTCTTTATTTCTACAGTTGGAAGACTAGGGAG
CTGGAGTTCTTCTTTTTCTGGTATTGTTCTCGAGAGGGAGTTAGGAATTT
AACTGTGGAAGTAATTCCCCGGGCACCCAAAGTAAATAAATTGTATTTGC
TGTCCTCTATTTTTCTTTCACCTACCACTCTGAAAAAAAAAATCCTGTAA
AGAGCCATATCAACTGAGTATCAAAAAACCTTGAAAAGTGCCAAAGTTTT
TGCCAAAAAACCTTGAAAAAACACTTAAAAATGACCAAAAAAACCTTGAA
AAGTGCCAAAGTTTTTGCCAAAAAACCTTGAAAAGTGCCAAAGTTTTTGC
CAAAAAACCTTGAAAAAACACTTAAAAATGACCAAAAAAACCTTGAAAAC
CTTGAAAATCTCAAGAAAAAAAATCTGTAGACACCCTGAGTCCTCTAAAT
ATAGCCATGTGTTAACTTTGAAGGCCCTTTTGAAGAGAGACAATGATCTG
AAAAATAATTTGGGTCTGAACCAAAGAATTCTTCAAAAATCTCAAAACAC
ACAAATTGAACTTTCATAGCAAAATGAGGTAAGACAAGACCTTAATTTCA
GTGATTTAGGTGTGTGATAAGGAGTACTATACACAACTTTTAGTTGTGAA
ACTAACTTATAGAGTGTGATTGATTGCACTCCACAGACATTTTAGGTGTG
TGGAGGTGTGCTTGTGCTATCACTCGCCTCATCAAATGATGCAGCCTGTT
TTACACTGTCTTACGCTTATTAAATTCTTTTAAACTTAAAAAAAATATTT
TCCTACAAAGAAAATCAATGAACCACCAAGTAAAACAAACATTATAACGA
AAAATTAAAAGTTTAAGAAAAAATTGGAAAAATCTAAGAACGTAAAAAAA
TATATTTTGTGGTAGGGTAGTGTGGTAGTTTTTTTTTGTCACCCGCATTT
CATTTCTTTTTCTTATCCTTGAAAAAAAAATTCATGAGGTGGTGAGTTTT
GTCATTGTAATGTTTAGACATTTTATTCTTTTACTGCCTAGTACTATGTT
TTATATGGTAGGCTAAATTGTGATTTAAACTCATTTAAACAGTTCCTTAG
GTTACAAACTTTTTGAATAAGAACAAATAAATTTTGACTGAGCTATTTTT
TTAAAAACGTTCTTGTGTTCTTATAGAATTGTTCTTAAGAAAGTGTGTAC
TTTTTCTTTACATTGACAATTTTAGGAAAGTATGAATTCATCTTGGCAAT
GAACTTATTTTACCATTAAAATCGATCTTATAATTTCAACCGTTAAAACT
TTTGATATTGTGTGTGATTTGGAGTTTAAGCTAAATTTAGTTTTTCATCT
TTCAGTTGTTCTGATTGGAGATTCTGGTGTTGGTAAATCTAACCTTCTCT
CGCGATTCACACGAAATGAATTCAATCTGGAATCCAAGTCAACAATCGGT
GTTGAATTCGCCACAAGGAGTATCCAAGTTGGTGGAAAAGTTATAAAAGC
ACAAATTTGGGATACAGGTACTATTGTTGTTTTTTTTGTAGCACTATTAG
AGGAGCATTAGTATTTCAGAAATGTACTGAAGTGTACTGATCGTGTCTAT
TGAAAACTTCTTTGTTTTAGCTATAATTTGGTCGTTACAAAAAGTTCAGA
AAAAAACGGCTCGCCATGCGAAGAGGGCTGGTTTCTATATGCTGTGTTTA
TAAAAGTGGTTTTATGTTTTTCGTTTTTNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNGATGCCGTTATATCATTAGAATCGCTAGAAAATTCTGAGCAAGAAAA
TATAGGTATCTTTTGGTATAAAAGAGGTCTCCCCAAAATATAAGCCCCTA
AAGTTTGCGCATAATTTGACCTGAAACAAAAGAATTTCGTCATGCCACGC
TAATTATACAACTTTTTTTAAACAACAACAAAAGAAATCCATTAGCTCGA
AACAAACTCCCTTAAGGGCAAAGGACCTGGTATATGACAAGCTGTTTGTC
TATTGTTCTGAAGAAGCTGTTTTTCCATCTCTTTACATTTCTCTGCTCCC
ATTCTTGAAAAAGGATTACCTGTTTTATTTTTTTCCGGTCTTAGAATTTT
CATATTTTCAAATTTGGCTAGTTTTCTTTTGGCGTCTTTTTAAACGTTGT
ATGTCTTTCAATTTCAGCTGGTCAAGAAAGATACAGAGCCATTACTAGTG
CGTAAGTAAATTATCTACTTTGTTTTTAGTAGCATTGTATTTTAAAACAA
TAATTTATTACCAACTCAGACCTTTTCCTCGTGGAGAAACTTTTGGTCAC
CTTGCCAAAAGCTTGTTGCACACCTGCTGTCGCTGACTGTGTCACTTTCC
CGAACCTTTATCCGTATGCTAATTAAAGCAGATACTGACTAACTTTCTTT
ATTATTTTCAGATATTACAGAGGAGCTGTTGGAGCTCTATTAGTTTACGA
CATCGCAAAACACATAACTTACGAAAATGTCGAAAGGTGGCTAAAAGAAT
TGCGAGATCACGCTGATGCAAATATAGTTATTATGCTGGTCGGAAACAAA
TCTGATTTGAGACATTTAAGGGCAGTACCAACAGAAGAAGCCAAAGCTTT
CGCCGGTATGTATATTTTCTTTTGGAAATTCAGCTCCTAAGCTTTTGTTT
TAAAATTAAATCAATGGCAAAACGAGGAAAGACTGTCTAAAACTGTTATG
TTGGATTTACAACTTGATTTCTTCGCTTTTTCAGTAGCTTCTCAACAACT
TTAGCAACCAAGTTTTTTTATCGGAAAGATATTGCATCTTTTTATGGCAC
ATTTTATGTTGAATTTTATTTATTTGTTTTTCCTTTTTAGAACGAAATGA
ATTATCCTTTATCGAAACCTCTGCGTTGGATTCCACTAATGTCGAAGTAG
CTTTTAGGAATATTCTGGAAGGTAAGAGATTTATCTCGAAAATACGTAAA
ATACAGTTATGTTCTGACGGGTACTCGTATAATATGAAGTTGTGAATACA
TATTTGGTCGTGACCTAATCTCGACTTCTTTAAGAATAATTCTGATAATC
ATAACCCTGCATAACCATTTTAAAACCTTGACATTTTCATTTTTCTAGAA
ATTTATCACATCGTCTCACAAAAGCAAATTCGTGACGCTAACAGTTCTTC
TGGACCACAACCGAACGAGTACACTCAAACCATCCAAGTTGCTCCTACCG
AATCAGACACTAAAAAACAAGTCAAATGTTGCCAATAATAAAAGACTTGA
ATACAATTCCTCGTGATTCTGTTTGGACCTAAATTCAATCAGTCAATCTT
TAAACTTTTAGGTTCCAAAGGTTGCTTTGGTGCAATTTTGAGCGATCGTA
AATTCAATTTTACCATTTGAAAAAAGAATTGCTTGAAATTCTTACACATT
TTTCCATTTGAAAGCTGTAGCGACTGGTAGACTGAAGAGGGCTGCAAAAT
ATTGGGAAACTACTCTTCCATCAAGCAAAACACCTATCGTTTAATTTTAA
ATACTTCGTGATTCGCAAAGTTTTTTTCTGTTTTTGTTTCTTTCNTGAAA
ATGTATTTTGTCATCTTTTCGAGGCTTTTAGTTACCAAATCACTCCACTT
TGCACGCCTATCTTCTTGATAACTTTGAAATTGAGCCCCGAAGGGCTAAA
GATGAATTTTCAACCTTTCTCAAGCAAGAAAAAGTGAAGCCTTAAGATTT
TGTGAAGTAACAAATTTTACATACCATTCTCAAGGGCAAAGGACCTGGTA
CATGAAGAGCCCTGTTTTCAAGAAGCTGTTTTTCCATCACATTACACTTC
TCTGAACTCGCGAAAGTTTGTACGCCTAAAGTTACAGAACTCACCAAAAT
GGCTAAATCGCGAAATTCGATTTTTTTGGAGGAAGAAGACGGCGACCAAG
TTTAATAATGACTTATCATAGAAACATTCATATTTGATGTTATTATTTTG
TTGTGAAAGTTAATGTTAATGTGACTGAAATATGTCTTGCAATCGATGAA
AAATATGAAAAACATTTTCTCTGTAAAAAAAATTATTTTGAAATTTCTCA
ATCGCGAAATTNATCCAAGTTGCTCCTACCGAATCAGACACTAAAAAACA
AGTCAAATGTTGCCAATAATAAAAGACTTGAATACAATTCCTCGTGATTC
TGTTTGGACCTAAATTCAATCAGTCAATCTTTAAACTTTTAGGTTCCAAA
GGTTGCTTTGGTGCAATTTTGAGCGATCGTAAATTCAATTTTACCATTTA
AAAAAAGAATTGCTTGAAATTCTTACACATTTTTCCATTTGAAAGCTGTA
GCGACTGGTAGACTGAATAGGGCTGAAAAATATTGGGAAACTACTCTTCC
ATCAAGCAAAACACCTATCGTTTAATTTTAAATACTTCGTGATTCGCAAA
GTTTTTTTCTGTTTTTGTTTCTTTTCTTTTTTTCAATCGAATTTTTTACA
CGTCACTTTTTATAAGAAACAAAAAGAATTGCTTACGTTAGTTGTGAATA
TCTAATAGAAATTATTATTTCTAGTACAGTAGTAATTTAGGCTATTTTTT
CCCTTTTCTTTTAGATAAAGTAAGCAAATTGAATCAAGTACTGACTAATA
GAAATCTCCACATATTCGCTGTATTATTTTAAGTTTTGTTCCGTTTTACT
AATTTATGTTAATTTCAGGTACTTGATTCTTTATTTCGTCTGTCGAAGCG
TTGAAAATCTGCTCATTCATCAATTAAACCACACCCTTCTCAAAATGTAA
TTTAAAATTCGGAGATGCCTTGGAATTTTTACAAGATGCTTAACTGATTG
GTTATTTTTNTTCTCAATCGCGAAATTAATTCCGTGAAACTTTTGAAATC
GGCTCATTCGCGAAATTTGCCATTTTGAAACTCTGATTCGCGAAATTAAA
TTCCGCGAAAATTTCTTCCCTTTATAAGGTATTAGAGAGTTTATGTATGT
GTGTTTTTCAGCGACGGAGACGGTAAGGTTCTAATTTGAGTAGATCATGA
CCAACTGAGGACGACGGTAAATCAGCACTTTTACCGTCCTCGATTTTGCG
GGGCGGAATTGCGGGTTTTTCCAAATCGCTTCAGTCACTCTACCGTCCTC
AAAAGTGCAAATACATA

Coding sequence (CDS) from alignment at scaffold_472:23006..33422-

>TCONS_00067678 ID=TCONS_00067678|Name=TCONS_00067678|organism=Clytia hemisphaerica|type=CDS|length=3906bp|location=Sequence derived from alignment at scaffold_472:23006..33422- (Clytia hemisphaerica)
AAATTTATCACATCGTCTCACAAAAGCAAATTCGTGACGCTAACAGTTCT
TCTGGACCACAACCGAACGAGTACACTCAAACCATCCAAGTTGCTCCTAC
CGAATCAGACACTAAAAAACAAGTCAAATGTTGCCAATAAAACGAAATGA
ATTATCCTTTATCGAAACCTCTGCGTTGGATTCCACTAATGTCGAAGTAG
CTTTTAGGAATATTCTGGAAGATATTACAGAGGAGCTGTTGGAGCTCTAT
TAGTTTACGACATCGCAAAACACATAACTTACGAAAATGTCGAAAGGTGG
CTAAAAGAATTGCGAGATCACGCTGATGCAAATATAGTTATTATGCTGGT
CGGAAACAAATCTGATTTGAGACATTTAAGGGCAGTACCAACAGAAGAAG
CCAAAGCTTTCGCCGCTGGTCAAGAAAGATACAGAGCCATTACTAGTGCT
TGTTCTGATTGGAGATTCTGGTGTTGGTAAATCTAACCTTCTCTCGCGAT
TCACACGAAATGAATTCAATCTGGAATCCAAGTCAACAATCGGTGTTGAA
TTCGCCACAAGGAGTATCCAAGTTGGTGGAAAAGTTATAAAAGCACAAAT
TTGGGATACAGATGGCAAGCAAAGATGATGAATATGATTATTTGTTTAAA
GAAATTTATCACATCGTCTCACAAAAGCAAATTCGTGACGCTAACAGTTC
TTCTGGACCACAACCGAACGAGTACACTCAAACCATCCAAGTTGCTCCTA
CCGAATCAGACACTAAAAAACAAGTCAAATGTTGCCAATAAAACGAAATG
AATTATCCTTTATCGAAACCTCTGCGTTGGATTCCACTAATGTCGAAGTA
GCTTTTAGGAATATTCTGGAAGATATTACAGAGGAGCTGTTGGAGCTCTA
TTAGTTTACGACATCGCAAAACACATAACTTACGAAAATGTCGAAAGGTG
GCTAAAAGAATTGCGAGATCACGCTGATGCAAATATAGTTATTATGCTGG
TCGGAAACAAATCTGATTTGAGACATTTAAGGGCAGTACCAACAGAAGAA
GCCAAAGCTTTCGCCGCTGGTCAAGAAAGATACAGAGCCATTACTAGTGC
TTGTTCTGATTGGAGATTCTGGTGTTGGTAAATCTAACCTTCTCTCGCGA
TTCACACGAAATGAATTCAATCTGGAATCCAAGTCAACAATCGGTGTTGA
ATTCGCCACAAGGAGTATCCAAGTTGGTGGAAAAGTTATAAAAGCACAAA
TTTGGGATACAGATGGCAAGCAAAGATGATGAATATGATTATTTGTTTAA
AGAAATTTATCACATCGTCTCACAAAAGCAAATTCGTGACGCTAACAGTT
CTTCTGGACCACAACCGAACGAGTACACTCAAACCATCCAAGTTGCTCCT
ACCGAATCAGACACTAAAAAACAAGTCAAATGTTGCCAATAAAACGAAAT
GAATTATCCTTTATCGAAACCTCTGCGTTGGATTCCACTAATGTCGAAGT
AGCTTTTAGGAATATTCTGGAAGATATTACAGAGGAGCTGTTGGAGCTCT
ATTAGTTTACGACATCGCAAAACACATAACTTACGAAAATGTCGAAAGGT
GGCTAAAAGAATTGCGAGATCACGCTGATGCAAATATAGTTATTATGCTG
GTCGGAAACAAATCTGATTTGAGACATTTAAGGGCAGTACCAACAGAAGA
AGCCAAAGCTTTCGCCGCTGGTCAAGAAAGATACAGAGCCATTACTAGTG
CTTGTTCTGATTGGAGATTCTGGTGTTGGTAAATCTAACCTTCTCTCGCG
ATTCACACGAAATGAATTCAATCTGGAATCCAAGTCAACAATCGGTGTTG
AATTCGCCACAAGGAGTATCCAAGTTGGTGGAAAAGTTATAAAAGCACAA
ATTTGGGATACAGATGGCAAGCAAAGATGATGAATATGATTATTTGTTTA
AAGAAATTTATCACATCGTCTCACAAAAGCAAATTCGTGACGCTAACAGT
TCTTCTGGACCACAACCGAACGAGTACACTCAAACCATCCAAGTTGCTCC
TACCGAATCAGACACTAAAAAACAAGTCAAATGTTGCCAATAAAACGAAA
TGAATTATCCTTTATCGAAACCTCTGCGTTGGATTCCACTAATGTCGAAG
TAGCTTTTAGGAATATTCTGGAAGATATTACAGAGGAGCTGTTGGAGCTC
TATTAGTTTACGACATCGCAAAACACATAACTTACGAAAATGTCGAAAGG
TGGCTAAAAGAATTGCGAGATCACGCTGATGCAAATATAGTTATTATGCT
GGTCGGAAACAAATCTGATTTGAGACATTTAAGGGCAGTACCAACAGAAG
AAGCCAAAGCTTTCGCCGCTGGTCAAGAAAGATACAGAGCCATTACTAGT
GCTTGTTCTGATTGGAGATTCTGGTGTTGGTAAATCTAACCTTCTCTCGC
GATTCACACGAAATGAATTCAATCTGGAATCCAAGTCAACAATCGGTGTT
GAATTCGCCACAAGGAGTATCCAAGTTGGTGGAAAAGTTATAAAAGCACA
AATTTGGGATACAGATGGCAAGCAAAGATGATGAATATGATTATTTGTTT
AAAGAAATTTATCACATCGTCTCACAAAAGCAAATTCGTGACGCTAACAG
TTCTTCTGGACCACAACCGAACGAGTACACTCAAACCATCCAAGTTGCTC
CTACCGAATCAGACACTAAAAAACAAGTCAAATGTTGCCAATAAAACGAA
ATGAATTATCCTTTATCGAAACCTCTGCGTTGGATTCCACTAATGTCGAA
GTAGCTTTTAGGAATATTCTGGAAGATATTACAGAGGAGCTGTTGGAGCT
CTATTAGTTTACGACATCGCAAAACACATAACTTACGAAAATGTCGAAAG
GTGGCTAAAAGAATTGCGAGATCACGCTGATGCAAATATAGTTATTATGC
TGGTCGGAAACAAATCTGATTTGAGACATTTAAGGGCAGTACCAACAGAA
GAAGCCAAAGCTTTCGCCGCTGGTCAAGAAAGATACAGAGCCATTACTAG
TGCTTGTTCTGATTGGAGATTCTGGTGTTGGTAAATCTAACCTTCTCTCG
CGATTCACACGAAATGAATTCAATCTGGAATCCAAGTCAACAATCGGTGT
TGAATTCGCCACAAGGAGTATCCAAGTTGGTGGAAAAGTTATAAAAGCAC
AAATTTGGGATACAGATGGCAAGCAAAGATGATGAATATGATTATTTGTT
TAAAGAAATTTATCACATCGTCTCACAAAAGCAAATTCGTGACGCTAACA
GTTCTTCTGGACCACAACCGAACGAGTACACTCAAACCATCCAAGTTGCT
CCTACCGAATCAGACACTAAAAAACAAGTCAAATGTTGCCAATAAAACGA
AATGAATTATCCTTTATCGAAACCTCTGCGTTGGATTCCACTAATGTCGA
AGTAGCTTTTAGGAATATTCTGGAAGATATTACAGAGGAGCTGTTGGAGC
TCTATTAGTTTACGACATCGCAAAACACATAACTTACGAAAATGTCGAAA
GGTGGCTAAAAGAATTGCGAGATCACGCTGATGCAAATATAGTTATTATG
CTGGTCGGAAACAAATCTGATTTGAGACATTTAAGGGCAGTACCAACAGA
AGAAGCCAAAGCTTTCGCCGCTGGTCAAGAAAGATACAGAGCCATTACTA
GTGCTTGTTCTGATTGGAGATTCTGGTGTTGGTAAATCTAACCTTCTCTC
GCGATTCACACGAAATGAATTCAATCTGGAATCCAAGTCAACAATCGGTG
TTGAATTCGCCACAAGGAGTATCCAAGTTGGTGGAAAAGTTATAAAAGCA
CAAATTTGGGATACAGATGGCAAGCAAAGATGATGAATATGATTATTTGT
TTAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042254XLOC_042254Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067678-proteinTCONS_00067678-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067678-exon-scaffold_472-1575043694:33043..33422TCONS_00067678-exon-scaffold_472-1575043694:33043..33422Clytia hemisphaericaexon
TCONS_00067678-exon-scaffold_472-1575043694:27206..27367TCONS_00067678-exon-scaffold_472-1575043694:27206..27367Clytia hemisphaericaexon
TCONS_00067678-exon-scaffold_472-1575043694:25922..25955TCONS_00067678-exon-scaffold_472-1575043694:25922..25955Clytia hemisphaericaexon
TCONS_00067678-exon-scaffold_472-1575043694:25518..25711TCONS_00067678-exon-scaffold_472-1575043694:25518..25711Clytia hemisphaericaexon
TCONS_00067678-exon-scaffold_472-1575043694:25202..25282TCONS_00067678-exon-scaffold_472-1575043694:25202..25282Clytia hemisphaericaexon
TCONS_00067678-exon-scaffold_472-1575043694:24604..25024TCONS_00067678-exon-scaffold_472-1575043694:24604..25024Clytia hemisphaericaexon
TCONS_00067678-exon-scaffold_472-1575043694:23006..23721TCONS_00067678-exon-scaffold_472-1575043694:23006..23721Clytia hemisphaericaexon
TCONS_00067678-exon-scaffold_472-1510915933:33043..33422TCONS_00067678-exon-scaffold_472-1510915933:33043..33422Clytia hemisphaericaexon
TCONS_00067678-exon-scaffold_472-1510915933:27206..27367TCONS_00067678-exon-scaffold_472-1510915933:27206..27367Clytia hemisphaericaexon
TCONS_00067678-exon-scaffold_472-1510915933:25922..25955TCONS_00067678-exon-scaffold_472-1510915933:25922..25955Clytia hemisphaericaexon
TCONS_00067678-exon-scaffold_472-1510915933:25518..25711TCONS_00067678-exon-scaffold_472-1510915933:25518..25711Clytia hemisphaericaexon
TCONS_00067678-exon-scaffold_472-1510915933:25202..25282TCONS_00067678-exon-scaffold_472-1510915933:25202..25282Clytia hemisphaericaexon
TCONS_00067678-exon-scaffold_472-1510915933:24604..25024TCONS_00067678-exon-scaffold_472-1510915933:24604..25024Clytia hemisphaericaexon
TCONS_00067678-exon-scaffold_472-1510915933:23006..23721TCONS_00067678-exon-scaffold_472-1510915933:23006..23721Clytia hemisphaericaexon
TCONS_00067678-exon-scaffold_472-1491911889:33043..33422TCONS_00067678-exon-scaffold_472-1491911889:33043..33422Clytia hemisphaericaexon
TCONS_00067678-exon-scaffold_472-1491911889:27206..27367TCONS_00067678-exon-scaffold_472-1491911889:27206..27367Clytia hemisphaericaexon
TCONS_00067678-exon-scaffold_472-1491911889:25922..25955TCONS_00067678-exon-scaffold_472-1491911889:25922..25955Clytia hemisphaericaexon
TCONS_00067678-exon-scaffold_472-1491911889:25518..25711TCONS_00067678-exon-scaffold_472-1491911889:25518..25711Clytia hemisphaericaexon
TCONS_00067678-exon-scaffold_472-1491911889:25202..25282TCONS_00067678-exon-scaffold_472-1491911889:25202..25282Clytia hemisphaericaexon
TCONS_00067678-exon-scaffold_472-1491911889:24604..25024TCONS_00067678-exon-scaffold_472-1491911889:24604..25024Clytia hemisphaericaexon
TCONS_00067678-exon-scaffold_472-1491911889:23006..23721TCONS_00067678-exon-scaffold_472-1491911889:23006..23721Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_472supercontigscaffold_472:23006..33422 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
98.8486	111.072	67.9689	67.5977	210.663	150.193	248.66	269.204	188.781	190.854	152.653	132.524	138.94	125.868	153.764	167.547	168.911	181.318	98.8856	123.822	198.538	194.449	93.6664	95.8345	124.961	143.711	204.765	153.134	161.804	108.38
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001806Small_GTPase
IPR005225Small_GTP-bd_dom
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
Blast
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BLAST of TCONS_00067678 vs. Swiss-Prot (Human)
Match: RB11B (Ras-related protein Rab-11B OS=Homo sapiens GN=RAB11B PE=1 SV=4)

HSP 1 Score: 348.977 bits (894), Expect = 1.354e-115
Identity = 172/204 (84.31%), Postives = 182/204 (89.22%), Query Frame = 2 
Query:  341 MASKDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVGGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHITYENVERWLKELRDHADANIVIMLVGNKSDLRHLRAVPTEEAKAFAERNELSFIETSALDSTNVEVAFRNILEEIYHIVSQKQIRDANSSSGPQPNEYTQTIQVAPT 952
            M ++DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV GK IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKH+TYENVERWLKELRDHAD+NIVIMLVGNKSDLRHLRAVPT+EA+AFAE+N LSFIETSALDSTNVE AF+NIL EIY IVSQKQI D  ++    P      I V PT
Sbjct:    1 MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIAD-RAAHDESPGNNVVDISVPPT 203
The following BLAST results are available for this feature:
BLAST of TCONS_00067678 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RB11B1.354e-11584.31Ras-related protein Rab-11B OS=Homo sapiens GN=RAB... [more]
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