TCONS_00067688 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067688
Unique NameTCONS_00067688
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1830

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067688 ID=TCONS_00067688|Name=TCONS_00067688|organism=Clytia hemisphaerica|type=transcript|length=1830bp
CACGATATTCAATCCACAATGTTTTTTCGCCGACTGCGCTTAATGGAATC
ACTTTTGTTGGAAACGTTTTCTTCCCGTAGAAAAGTTGAAAACAACAATC
TTGAGCTTGTCGAAGGGTTTGCTCTGCCGTTGGACGGTCCGTGCCTTTTT
CTTTCCACATTTTGGTCATCAGGTCTGTTAGAGGGAGCAGTCCATACAGA
GCTGCAAAAGTATTTTCATAAGATGGTCGCTGTCCATTTTTTAGTACAGA
ACGATCAAAATCATGGAACGGTAGTCGACCATTTATCATTTCTCCAATCA
TCATAGAGAAAGAGTATATGTCTACACTGACATCGTGTTCACCCTTGCAC
AGTAGGATTTCTGGATCTCTAAAGTCGTAAGCTCCACTTTCTTTTTTCAT
ACCATCTGGTGTTAAACTATCGGTTGCTTCAAAATCGCCAAGTTTGACAA
TAATAGTAAGATTTTGTTCATCTAACTCACTGATAAGAATGCTACCACTT
CTGATGTTTCTATGAACGATATTTCGTTGATGCATGTAGACGAGAGCATT
CGCAACTTGTTTGATGATGCGAAACAATAAAAGCCGTTTAATCGGTAACC
GTCCGGCGTTGTTGTACAAGATATCTCTTAAAGTTCCATGGCTTGCTAAC
TCTGTTACTAAGGATAGAAACGGAGTTTGTATCGATATACCAATCAAACG
AACAATAAACGGATTTTGCTGAAGTTCATTGAGAAAGAATGTCTCGTGTC
TTGCGGTAAAGAATGCATTTAATAACTCGCGAATGTTAGTTTCTTTGTTA
GAACCGTTGAATGTTTTGATAAAGACAGGGGTTAGTTTTTCTTTAGAAGT
CGTATGATATCCATGGTACATTTCACCAAAAGCTCCCTGAGCAAACACGT
CACTCTCTGTGAAATGAAGGGTACTTTTTTCAATCAGCAAATCTTTAggt
aaatctttgaaaaatagtTCGGGAAACATCTTTTCAACATCATGTCTTGA
CAATAAGTGTTGTCCCTTACATGAAAGTTGGGCATCATTATCATTCATCT
TTGTGTTGTATTTTAAGAAAGCATCCTCAATGTTTATGAAGTTTACCTTT
TGGCATCCATCCCTGGTGCACACGGGACATGCTGCAAAATTTCTGATATC
GGCAAAGTTAGAAAACCATTCCGTGATAACCGTTTGAATATGTTTAATGA
TGTAGCCAAGTACTCGGTAGCCCATCGGATCACTAAGCACTCTGGTCTCC
AATATTTCAATTCCACTCACAGCTTCTTTtcggatggaaaaatggaagtT
GGGAAGCTCTAATTGAATGCCATTCTTCCAGCAGATCAAAGATCTGTCAA
CTAGCATTTTTTCAATCGTTACATCATTCGATAAGACGGCTTCACTGCCA
GTGGCATCAACATAAAGGTTTTTTTCGGTCATCATTTCCTTCATGAAGAA
AACTAAACGACTCAATAACCGTTCCATGAATCCGTGTGGAATTACCAGTA
AAAAGACATATCTTCGGATTATCATGTCTTTAAATTCAAGTTGTTTCGGC
ATAGGATAAGGTTGATTGTAAAGTTGTGAAGGAACAAGAACGTCATCCGC
ACTAATTGGAATaatgatttgaaatttgtacaaaattcGCAGAAAGGTTT
TGAACGGCAACGgagaaaagttgattttttcatttttcaggtcatttttg
aaagaatgaaGAGTCATTCTTCCATGCTGTGAAGTTTTGTGTAGGATTTT
GACAGCGCAACATAACAACTGATAAAGCCATGAGGGATCAGTGAAGTAGA
AGTCGTCCAAGTCATCCAGTAAACAGTCAA
Run BLAST on NCBI

transcript from alignment at scaffold_472:251399..253354-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067688 ID=TCONS_00067688|Name=TCONS_00067688|organism=Clytia hemisphaerica|type=transcript|length=1956bp|location=Sequence derived from alignment at scaffold_472:251399..253354- (Clytia hemisphaerica)
CACGATATTCAATCCACAATGTTTTTTCGCCGACTGCGCTTAATGGAATC
ACTTTTGTTGGAAACGTTTTCTTCCCGTAGAAAAGTTGAAAACAACAATC
TTGAGCTTGTCGAAGGGTTTGCTCTGCCGTTGGACGGTCCGTGCCTTTTT
CTTTCCACATTTTGGTCCTCAGGTCTGTTAGAGGGAGCAGCCCATACAGA
GCTGCAAAAGTATCTTCATAAGATGATGGTGGCTGACCATCTTTCAGTGC
AAAAGGATCAATACCACGAAATGATGGTCNACACATTTTGGTCATCAGGT
CTGTTAGAGGGAGCAGTCCATACAGAGCTGCAAAAGTATTTTCATAAGAT
GGTCGCTGTCCATTTTTTAGTACAGAACGATCAAAATCATGGAACGGTAG
TCGACCATTTATCATTTCTCCAATCATCATAGAGAAAGAGTATATGTCTA
CACTGACATCGTGTTCACCCTTGCACAGTAGGATTTCTGGATCTCTAAAG
TCGTAAGCTCCACTTTCTTTTTTCATACCATCTGGTGTTAAACTATCGGT
TGCTTCAAAATCGCCAAGTTTGACAATAATAGTAAGATTTTGTTCATCTA
ACTCACTGATAAGAATGCTACCACTTCTGATGTTTCTATGAACGATATTT
CGTTGATGCATGTAGACGAGAGCATTCGCAACTTGTTTGATGATGCGAAA
CAATAAAAGCCGTTTAATCGGTAACCGTCCGGCGTTGTTGTACAAGATAT
CTCTTAAAGTTCCATGGCTTGCTAACTCTGTTACTAAGGATAGAAACGGA
GTTTGTATCGATATACCAATCAAACGAACAATAAACGGATTTTGCTGAAG
TTCATTGAGAAAGAATGTCTCGTGTCTTGCGGTAAAGAATGCATTTAATA
ACTCGCGAATGTTAGTTTCTTTGTTAGAACCGTTGAATGTTTTGATAAAG
ACAGGGGTTAGTTTTTCTTTAGAAGTCGTATGATATCCATGGTACATTTC
ACCAAAAGCTCCCTGAGCAAACACGTCACTCTCTGTGAAATGAAGGGTAC
TTTTTTCAATCAGCAAATCTTTAGGTAAATCTTTGAAAAATAGTTCGGGA
AACATCTTTTCAACATCATGTCTTGACAATAAGTGTTGTCCCTTACATGA
AAGTTGGGCATCATTATCATTCATCTTTGTGTTGTATTTTAAGAAAGCAT
CCTCAATGTTTATGAAGTTTACCTTTTGGCATCCATCCCTGGTGCACACG
GGACATGCTGCAAAATTTCTGATATCGGCAAAGTTAGAAAACCATTCCGT
GATAACCGTTTGAATATGTTTAATGATGTAGCCAAGTACTCGGTAGCCCA
TCGGATCACTAAGCACTCTGGTCTCCAATATTTCAATTCCACTCACAGCT
TCTTTTCGGATGGAAAAATGGAAGTTGGGAAGCTCTAATTGAATGCCATT
CTTCCAGCAGATCAAAGATCTGTCAACTAGCATTTTTTCAATCGTTACAT
CATTCGATAAGACGGCTTCACTGCCAGTGGCATCAACATAAAGGTTTTTT
TCGGTCATCATTTCCTTCATGAAGAAAACTAAACGACTCAATAACCGTTC
CATGAATCCGTGTGGAATTACCAGTAAAAAGACATATCTTCGGATTATCA
TGTCTTTAAATTCAAGTTGTTTCGGCATAGGATAAGGTTGATTGTAAAGT
TGTGAAGGAACAAGAACGTCATCCGCACTAATTGGAATAATGATTTGAAA
TTTGTACAAAATTCGCAGAAAGGTTTTGAACGGCAACGGAGAAAAGTTGA
TTTTTTCATTTTTCAGGTCATTTTTGAAAGAATGAAGAGTCATTCTTCCA
TGCTGTGAAGTTTTGTGTAGGATTTTGACAGCGCAACATAACAACTGATA
AAGCCATGAGGGATCAGTGAAGTAGAAGTCGTCCAAGTCATCCAGTAAAC
AGTCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042259XLOC_042259Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067688-exon-scaffold_472-1575043694:253197..253354TCONS_00067688-exon-scaffold_472-1575043694:253197..253354Clytia hemisphaericaexon
TCONS_00067688-exon-scaffold_472-1575043694:251399..253070TCONS_00067688-exon-scaffold_472-1575043694:251399..253070Clytia hemisphaericaexon
TCONS_00067688-exon-scaffold_472-1510915933:253197..253354TCONS_00067688-exon-scaffold_472-1510915933:253197..253354Clytia hemisphaericaexon
TCONS_00067688-exon-scaffold_472-1510915933:251399..253070TCONS_00067688-exon-scaffold_472-1510915933:251399..253070Clytia hemisphaericaexon
TCONS_00067688-exon-scaffold_472-1491911889:253197..253354TCONS_00067688-exon-scaffold_472-1491911889:253197..253354Clytia hemisphaericaexon
TCONS_00067688-exon-scaffold_472-1491911889:251399..253070TCONS_00067688-exon-scaffold_472-1491911889:251399..253070Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_472supercontigscaffold_472:251399..253354 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0303758	0.0258912	0	0.0810998	0	0.179245	0	0.197176	0.0698274	0.00513906	0.151074	0.124822	0.309856	0.0139634	0.374364	0.527034	0.25278	0.462049	0.312931	0.400098	0.100432	4.35168e-05	0.150193	0	0	0.171876	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000719Prot_kinase_dom
IPR011009Kinase-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004672protein kinase activity
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0006468protein phosphorylation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006468 protein phosphorylation
molecular_function GO:0005524 ATP binding
molecular_function GO:0004672 protein kinase activity
Blast
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BLAST of TCONS_00067688 vs. Swiss-Prot (Human)
Match: LRRK1 (Leucine-rich repeat serine/threonine-protein kinase 1 OS=Homo sapiens GN=LRRK1 PE=1 SV=3)

HSP 1 Score: 145.591 bits (366), Expect = 4.315e-36
Identity = 161/647 (24.88%), Postives = 278/647 (42.97%), Query Frame = -3 
Query:   65 FYFTDPSWLYQLL--CCAVKILHKTSQHGRMTLHSFKNDLKNEKINFSPLPFKTFLRILYKFQIIIPISADDVLVPSQLYNQPYPMPKQLEFKDM------IIRRYVFLLVIPHGFMERLLSRLVFFMKEMMTEKNLYVDATGSEAVLSNDVTIEKMLVDRSLIC------------WKNGIQLELPNFHFSI-------RKEAVSGIEILETRVLSDPMGYRVLGYIIKHIQTVITEWFSNFAD--------IRNFAACPVCTRDGCQ---------KVNFINIEDAFLKYNTKMNDNDAQLSCKGQHLLSRHDVEKMFPELFFKDLPKDLLIEKSTLHFTESD--VFAQGAFGEM-----YHGYHTTSKEKLTPVFIKTFNGSNKETNIREL-----LNAFFTARHETFFLNELQQNPFIVRLIGISIQTPFLSLVTELASHGTLRDILYNNA---GRLPIKRLLLFRIIKQVANALVYMHQRNIVHRNIRSGSILISELDEQNLTIIVKLGDFEATDSLTPDGMKKESGAYDFRDPEILLCKGEHDVSVDIYSFSMMIGEMINGRLP---FHDFD-RSVLKNGQRPSYENTFAALYGLLPLTDLMTKMWKEKGTDRPTAEQTLRQAQDCCFQLFY-----GKKT 1801
             YF DP WL + L     +K     +++G +     +  L      F+    + + + L KF+I +P++ D  L+P  L ++P      L+   M       I+R   +  +P GF +R ++R++  + EM  +  L+ +   +++  +  VTI     ++   C            W+ G+ +     + S+       +K+   G++I+    + D   +  + +I  H+ ++I +WF             +  +  CPVC     Q          V + ++ED  L   T +  +   +SC  +H      ++++ PELF  D P  L +E S L  +E +  V  QG  G +     Y G     K      F K F     +T +R L     +  F   R E   L+ LQ +P IV LIGISI    L    ELA   +L  +L  NA     +P+  +L  +I  Q+A+ L Y+H++NI+  +++S +IL+  LD +   I +KL D+  +     +G     G   ++ PEI   +  +D  VD++S+ M++ E+++G+ P    H       L  G RP         +    L  LM + W  K   RP A   + Q +D  F  F      GK+T
Sbjct:  919 LYFLDPIWLSECLQRIFNIKGSRSVAKNGVIRAEDLRMLLVG--TGFTQQTEEQYFQFLAKFEIALPVANDSYLLPHLLPSKP-----GLDTHGMRHPTANTIQRVFKMSFVPVGFWQRFIARMLISLAEM--DLQLFENKKNTKS-RNRKVTIYSFTGNQRNRCSTFRVKRNQTIYWQEGLLVTFDGGYLSVESSDVNWKKKKSGGMKIVCQSEVRD---FSAMAFITDHVNSLIDQWFPALTATESDGTPLMEQYVPCPVCETAWAQHTDPSEKSEDVQYFDMEDCVL---TAIERD--FISCP-RHPDLPVPLQELVPELFMTDFPARLFLENSKLEHSEDEGSVLGQGGSGTVIYRARYQGQPVAVKRFHIKKF-KNFANVPADTMLRHLRATDAMKNFSEFRQEASMLHALQ-HPCIVALIGISIHP--LCFALELAPLSSLNTVLSENARDSSFIPLGHMLTQKIAYQIASGLAYLHKKNIIFCDLKSDNILVWSLDVKE-HINIKLSDYGISRQSFHEGALGVEGTPGYQAPEIRP-RIVYDEKVDMFSYGMVLYELLSGQRPALGHHQLQIAKKLSKGIRPVLGQPEEVQFRR--LQALMMECWDTKPEKRPLALSVVSQMKDPTFATFMYELCCGKQT 1538
The following BLAST results are available for this feature:
BLAST of TCONS_00067688 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LRRK14.315e-3624.88Leucine-rich repeat serine/threonine-protein kinas... [more]
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