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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067696 ID=TCONS_00067696|Name=TCONS_00067696|organism=Clytia hemisphaerica|type=transcript|length=2230bpRun BLAST on NCBI protein sequence of TCONS_00067696-protein >TCONS_00067696-protein ID=TCONS_00067696-protein|Name=TCONS_00067696-protein|organism=Clytia hemisphaerica|type=polypeptide|length=414bp MVFHSLLRNTFKQKCCKCHLLLLPKHSRMVSSYGIQTNKGIFEIKKSKRNRun BLAST on NCBI transcript from alignment at scaffold_472:361808..380693- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00067696 ID=TCONS_00067696|Name=TCONS_00067696|organism=Clytia hemisphaerica|type=transcript|length=18886bp|location=Sequence derived from alignment at scaffold_472:361808..380693- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_472:361808..380693- >TCONS_00067696 ID=TCONS_00067696|Name=TCONS_00067696|organism=Clytia hemisphaerica|type=CDS|length=7470bp|location=Sequence derived from alignment at scaffold_472:361808..380693- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00067696 vs. Swiss-Prot (Human)
Match: CMPK2 (UMP-CMP kinase 2, mitochondrial OS=Homo sapiens GN=CMPK2 PE=1 SV=3) HSP 1 Score: 145.591 bits (366), Expect = 3.937e-37 Identity = 91/245 (37.14%), Postives = 144/245 (58.78%), Query Frame = 1
Query: 1426 HPVFEDPKFAPVYKNFDQAKTNLSKVCTRHESLEVKNMLNTLLKEPNTIGHSPKHPFIVVEGLDGTGKSTMTQNLGKFLGAEILGTPPASIKHIRKYFDVFPELCRRSFYAYGNYLAAEEIIQILQSCPVVLDRYYHSTTAYAIAKDSGFGIEKHLPSKGNPLYSWPNDLLRPSAVVFLTTEEKERDERMNIRD-ERTAEENELRDSQMFRKRIMEAYRRINLEDGWVEVDTGGTQEESLQKAVN 2157
HPV D + V+ + + A+ L + CT E + +L+ + + P I K + +EGLD TGK+T+TQ++ L A +L +PP+ I RK FD P + RR+FY+ GNY+ A EI + PV++DRY+HST YAIA + G++ HLP +P+Y WP DLL+P ++ LT +ER +R+ R E+T EE EL + +FR+++ +Y+R+ G VD ++E+ LQ ++
Sbjct: 201 HPVVPDLPSSVVFPDREAARAVLEE-CTSFIP-EARAVLDLVDQCPKQIQKG-KFQVVAIEGLDATGKTTVTQSVADSLKAVLLKSPPSCIGQWRKIFDDEPTIIRRAFYSLGNYIVASEIAKESAKSPVIVDRYWHSTATYAIATEVSGGLQ-HLPPAHHPVYQWPEDLLKPDLILLLTVSPEERLQRLQGRGMEKTREEAELEANSVFRQKVEMSYQRME-NPGCHVVDASPSREKVLQTVLS 440 The following BLAST results are available for this feature:
BLAST of TCONS_00067696 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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