TCONS_00067733 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067733
Unique NameTCONS_00067733
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3383

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067733 ID=TCONS_00067733|Name=TCONS_00067733|organism=Clytia hemisphaerica|type=transcript|length=3383bp
tCAGAACTACAAAAAGATAACCATAAAGTAATGTAACGGGATTTGATTTT
CTGGTCTCAATTTGATATAATACACAGACAAATTTATGTTACTGACTCAA
CTACAACACTACAATGGTTTAGTGATTTAACTTTGATTGAAGAAATTTGG
TAGCGTAAATTGGATGTTTTTACATCTTTAATAAACATAACTAGAGCGAA
ACATATCATGGAATCCACAAGTGagtttgatgatgatgatgatgatgata
aaaataaagattgTTTTGATGATGGTGAATTCAAACCAATGGTGGATATT
GATCCTGGAGAAGTCTCCGATGATTATAATAAAATTGAACAAGATGACAT
CTCAAATGTGAAATGCACATCCATGGATACTTTTAAGATCGTGCTAAAAT
CAATCAAACACAATCCTGTCAAATTTGCAACTAATGGTATCACCGATAAA
ATACATCTTCCAAGTCTCAATATTAAAGGCTTTGGGCCAATTTCTCTACC
ATTGTGCGAGTCACAAGGTCGTGAGATTATCGACCAATTTGAAAGGAATT
CAATTGATTCTTCTGTCAAGATAAAAAACTTGTTATTTGTGGGAAAGGAA
GTCGATTTGTAACAAGTTCAAATATTGGTGAGGAAGAGTTTGTCACGATA
ATTGTCCAGCTACCATCTTTATTCACTGGAAACAAACTAACAGTTAGCAT
TGGTGATGAAACGGAAATAGTTGCTTTTGATGGAAAAGAAGCACATTGTG
AAATCATTTATTCTGCATTTTACTCGAACTGCAATTACGAAATGACTCCA
TTGGAGTCTGGATATCGAGTGGCTCTCATTTACAAACTGAAACTAAACGA
TTCAAAAGAAATGATCAAACCACTGGAAGAAAGCATTAGAATAAGGAAAG
AAGTTACGACGGCATTATCAGAGATCTACAGAAATCGGAAAAAACGGTTT
GCACTTTTGCTAGAAGAGAAGTATAATTGGAAGTCCCTCAAGAGTGgtgt
caaaaagttaaaaagtcaaGATCAAGCAATAGGAGATTATCTGGAATATG
CGAACAAATCTTTACCTCTGCATGAACAATGGTCCTTTTATTTGGTAGAT
TACCAGACATCAGCTGATGGACTTTCCGAGTGTTCCAAAGATGATATAAG
TCTTCAAAAGGGCATCAAAATGGATGGCTCGATGAAATCTGTTGATTTTC
TCGGCCTCTCCCTTGATAAGAACGAAGATATTATTGCTATATCGgaaatt
caaaaatacaaacagaaaaatgacaaagaaaaagaaaaagcaagaAGAAA
ATTGAggttccttattttagcaattCCTTCGATTCGCCAATTCGAATATT
TTTGTAGTTCGAAATTCCCAACGCAATGTCTTCAATATATGGCTGATAAA
GTTGATCATACATCTCCACAGTTTAAAGTTTACTTAAAAGACCTTTTCAA
AAGGTACAAGTCTTTCAACGAAAGTAACAGCAAATTACTTGTTAACCTAA
TAATCAAACCTGAAGACCCGGAAATTGTACTTTGGTACATTGAGAAGGTG
ATGGCTCGTAAATTCAATTATTCAGAAAAAGTGCATGGTATTCCGGATAT
AGCTGAAGTGGATattgcaaaaatcttcaaatctgTTCCGTGGGAACAAA
TCAAAGAAGCTGTTGAAAATGTTATTGAGAATGTTGAATTCTGGCAGTAT
GAAAAATGGATGATGGTATTTTATCACTCGGGAATCATCGATGTTGCTCA
TAGAGTTGTCTATTCGAGTTTACAAGAGATAAAGTCGCGTAAAAGAGCAA
AACGATACATGCGACCTTTATGGCAGGAGATTATTGAAAGTCTTCACAAA
CATGATAATTTATCGGAACGTTGGTTAGATGAAATTACAACATGTGATTA
TATTGTAAATGATATTGAATTAAACGTACTGTTACTGAACAAGTTGTTGT
TTGATAAACCGTCATATTTTTTGTTACACCTTAACCGATTCGTTGATGAT
ATCATCAGTATAGACCAGGAAGAGGACATGAGAGGATTTTATCCCGAAGA
AATAACCGAAATGATTGTCTCTGTTGTGAGACACACTTTCCATAATTATG
ACTTCTTCAAAGAACCATCGGAAAAACTTTTCGATTACATTGTCTCTGGC
TCAATtgtattggatattttgttacAACTTTCAAATGAGAACGATACAGA
GGGCTTCAAAATGATATTTGATCGCTATATCGACCAATTactttattgca
ctcatttagTAAAAGATAGAGTTACTTTAGCCCAAATTCTATTACGTTGC
AATATTACAAATATGAATTCAAATATTGAAAGATTTcttgaagtttgtcg
aacaattGGTGATCTTAACACGTTATGCATGATtattgaagatattttaa
aaaacaaagacaaaatagacaataaaaaaagaagtttcGAAATGGTTAAT
GGACTTCTTGAGATATTTGTCACTAATTTCAATATGGATTTTAACTTTGA
AAAAGTGGTAAACTTGGTGATTACCCTATTTTCAGAAGGAGACTTGTTTG
CATCTAAGCTcgatgaatttttttcaaatgaattttttttagacCAACTG
CGGAGGAGATTTTGTCGAGTCATCAATGGCGTCACGAAAAAGGAGTTTCC
TAAATGTGAAAGTTCTAAGAAATTACTTAGACTTTTGTTAAGCATTTTAG
GAGAAGAACTTTTTTATTATGATAGTTATATAACGGATCGCTATCATCTA
CATTTTGTCAGGAAATTATTTAAAGATCGTTATTTTGAAGATATTGTTCT
TGAGTTTATTTCATCGGAGAAATTCAAATATAGCAATCATGAGCCATTTC
CAGCATATAAGAGGCGAAGctatattgagattttaatcgatgattttaaa
atagaattttcaaagaatgattTATACGGTGAACTTTTATTAGTTCGATA
CAATAACTTAAGAACATTAAAAGAGAGAGGATGTCCTAAATTTACATGGA
AGCAATCAGACGCACACATCTATGGTCATCCTGCAATCGAAAGATTTCTC
AGGAGTGAAGAAGTTACTTTAGTTTATCGAAATTTTAATGATATTGACCA
AGCAGTAGAATGGTTAATGATTCATTCACATTGGAACGAAGATCATGATT
TTACTGGCATTGTTAGAGGACATGAAGGAGAAATAGAATTGATTTTACAA
AAAGGGAGAGACCTTCATGAAAGGATGATTGTGAAATACACTTCTTTTAT
GGATGAAATGAAAGAGCTTGAAACACGGTTAAAAAGATTTCCAAAGATAT
ACTCGAAAATGGGAGCTTTGAAAAGAACCTCTCCATCATCGAACAAAAAT
GACATTGTTCCTGCTAAAAAGGCTCATTTGGAC
Run BLAST on NCBI

transcript from alignment at scaffold_473:164224..169447-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067733 ID=TCONS_00067733|Name=TCONS_00067733|organism=Clytia hemisphaerica|type=transcript|length=5224bp|location=Sequence derived from alignment at scaffold_473:164224..169447- (Clytia hemisphaerica)
TCAGAACTACAAAAAGATAACCATAAAGTAATGTAACGGGATTTGATTTT
CTGGTCTCAATTTGATATAATACACAGACAAATTTATGTTACTGACTCAA
CTACAACACTACAATGGTTTAGTGATTTAACTTTGATTGAAGAAATTTGG
TAGCGTAAATTGGATGTTTTTACATCTTTAATAAACATAACTAGAGCGAA
ACATATCATGGAATCCACAAGTGAGTTTGATGATGATGATGATGATGATA
AAAATAAAGATTGTTTTGATGATGGTGAATTCAAACCAATGGTGGATATT
GATCCTGGAGAAGTCTCCGATGATTATAATAAAATTGAACAAGATGACAT
CTCAAATGTGAAATGCACATCCGTGAGTTCCATTTTGAATTTTATGACAT
TAGAAATTTCAATCAGTTTTTTACAGTTTTTTGCATGATCTAATGTTTAT
TTTGGAGACTCTTTTTAACTCTAAAATTGTTCATACCAAAACTTATAATT
TGGTATTAATGGCCTTTTTATATTTTGACCCTTAATACACCCCGTGTCTC
GCAGCCCCGGTGGAACTTTTCTATCGAAATTCCAAAATGGGGATGTAAAT
TCTATTGTTTCAAGCTAGAAAGTCCACTGGAGTGGATTTGAAGTGCAGTT
TTTTACATGGAATTTCAAATGGGGATAAAATGAAAGTCATTCCCAGCGAG
GCTGAAGTTGTAGGGTATTATTCCCACTGGGGATAATTTTTTTTCAAATT
TCCAGTGGTGCGGGGGGAGGGGTCCCAGCGGATCTTCGTTTGCTTTATAA
AACTGTTCTAGTAAAGAGAAGTTTTTGGATTCTTTTAAAAGTAAAATGTA
AAAAAAAATCAGAAGTCTATAAAATGAGACCCAGAATTTGTAACATTTAC
AGCATTGTCTCTACTGGATTGGCTTTTTTACCATTTTCCTTTTAATGTAC
ATTGTTTTTAATCTCTTTATAGATGGATACTTTTAAGATCGTGCTAAAAT
CAATCAAACACAATCCTGTCAAATTTGCAACTAATGGTATCACCGATAAA
ATACATCTTCCAAGTCTCAATATTAAAGGCTTTGGGCCAATTTCTCTACC
ATTGTGCGAGTCACAAGGTCGTGAGATTATCGACCAATTTGAAAGGAATT
CAATTGATTCTTCTGTCAAGATAAAGTAAGATCTGTTATTCTTCATTTTG
TATAAATATTTCTTAAAACCAACTCCAAGTTTTCACACCTTGTCCCCAAA
CATGTTAAAAACCAGTTTGAGGTGCCTTTAGCCCTTTTATTTTTGAAACT
CACAAAAAAAGCTTTCACATCATAAACAACTTTCCACATCTAAGGCTATA
TGTTCTTTTTTCCTCAGGAACATTTTGGAATTTTATCCAGACGATTTCAC
AATCACGAATCCAAAGTTTCATCGCATATTGCAATCAATACGTCAACAAG
TTAAAAGTGAAATGTTTGTAAATCTACATGTGAATCTTACTTTGAAGAAA
CTTGTTATTTGTGGGAAAGGAAGTCGATTTGTAACAAGTTCAAATATTGG
TGAGGAAGAGTTTGTCACGATAATTGTCCAGCTACCATCTTTATTCACTG
GAAACAAACTAACAGTTAGCATTGGTGATGAAACGGAAATAGTTGCTTTT
GATGGAAAAGAAGCACATTGTGAAATCATTTATTCTGCATTTTACTCGAA
CTGCAATTACGAAATGACTCCATTGGAGTCTGGATATCGAGTGGCTCTCA
TTTACAAACTGAAACTAAACGATTCAAAAGAAATGATCAAACCACTGGAA
GAAAGCATTAGAATAAGGAAAGAAGTTACGACGGCATTATCAGAGGTAAG
GTTTGCATCCTTAACAATATTGTAATAGCCGATATTAACCAATTCAAAAC
TTATAATTTAATTTCTNCTATGTATCCTTAACAATATTGTAATAGCCGAT
ATTAACCAATTCAAAACTTATAATTTAATTTCTTATACTCGACTAGGCAT
ACATACAATATACATAACATAAAATATTTCACTTTCAGTTTCATTGATTA
AACGTTTTTTTATAAGAACATCCAAATTTTTTGAAGCCTTAAGATGTGAA
CCTTTGAGTATTAAGCCTAAAAATGTTCTTAATATTTTCTTAACATTTTG
ACCATGAAAGCCTTATCTTCTCTTATATAGTTTTTTCTCGTAAAAAAACA
CGTGTAGTCAAACTTAATTTGATTATGAAATTACTCAAGTCTTGAAATAG
CCTTGACAAAACGTTTTACAATATTATGCTTGCCATTGCACATCGATAAC
ATACCGTCGTCTCCTTGATTAGGTCTTTCATTTGCACAAAATCTATTATA
AAATCAAAACATACAATAATTGTTATGTATTTTTGCAACAGATCTACAGA
AATCGGAAAAAACGGTTTGCACTTTTGCTAGAAGAGAAGTATAATTGGAA
GTCCCTCAAGAGTGGTGTCAAAAAGTTAAAAAGTCAAGATCAAGCAATAG
GAGATTATCTGGAATATGCGAACAAATCTTTACCTCTGCATGAACAATGG
TCCTTTTATTTGGTAGATTACCAGACATCAGCTGATGGACTTTCCGAGTG
TATGTATTTTTATTTTGTTTTTAAGACAGGCCTTAAATCTTACAGTTTTA
ACTATTATGTTTCCTACCTAAGAGCATGTTTTGATATAATTTCATGCTTT
TTAACGTTGGCTAAAATTTCGCCTGGTTTCACGAACAGTTTCAGCACCAC
TGAAAATGTTCTTTGTTTTCATCCTCATTTGAAATTTTATGGAAAGAATT
GCATTCAAAAACCATTCCCACTGGGTTTTTTGAACTGGGAACAATAAAAT
TTATATCCCTAATGGAATTTCAGTAACAATTCTCATCCCCACTTTGGGAA
TGAGCTGGGGCTGTGAGACAGAGGTGTATGTCGATAATTCTTTCTTAATT
CAATCTTTTTCTATAATTTCAGGTTCCAAAGATGATATAAGTCTTCAAAA
GGGCATCAAAATGGATGGCTCGATGAAATCTGTTGATTTTCTCGGCCTCT
CCCTTGATAAGAACGAAGATATTATTGCTATATCGGAAATTCAAAAATAC
AAACAGAAAAATGACAAAGAAAAAGAAAAAGCAAGAAGAAAATTGAGGTT
CCTTATTTTAGCAATTCCTTCGATTCGCCAATTCGAATATTTTTGTAGTT
CGAAATTCCCAACGCAATGTCTTCAATATATGGCTGATAAAGTTGATCAT
ACATCTCCACAGTTTAAAGTTTACTTAAAAGACCTTTTCAAAAGGTACAA
GTCTTTCAACGAAAGTAACAGCAAATTACTTGTTAACCTAATAATCAAAC
CTGAAGACCCGGAAATTGTACTTTGGTACATTGAGAAGGTGATGGCTCGT
AAATTCAATTATTCAGAAAAAGTGCATGGTATTCCGGATATAGCTGAAGT
GGATATTGCAAAAATCTTCAAATCTGTTCCGTGGGAACAAATCAAAGAAG
CTGTTGAAAATGTTATTGAGAATGTTGAATTCTGGCAGTATGAAAAATGG
ATGATGGTATTTTATCACTCGGGAATCATCGATGTTGCTCATAGAGTTGT
CTATTCGAGTTTACAAGAGATAAAGTCGCGTAAAAGAGCAAAACGATACA
TGCGACCTTTATGGCAGGAGATTATTGAAAGTCTTCACAAACATGATAAT
TTATCGGAACGTTGGTTAGATGAAATTACAACATGTGATTATATTGTAAA
TGATATTGAATTAAACGTACTGTTACTGAACAAGTTGTTGTTTGATAAAC
CGTCATATTTTTTGTTACACCTTAACCGATTCGTTGATGATATCATCAGT
ATAGACCAGGAAGAGGACATGAGAGGATTTTATCCCGAAGAAATAACCGA
AATGATTGTCTCTGTTGTGAGACACACTTTCCATAATTATGACTTCTTCA
AAGAACCATCGGAAAAACTTTTCGATTACATTGTCTCTGGCTCAATTGTA
TTGGATATTTTGTTACAACTTTCAAATGAGAACGATACAGAGGGCTTCAA
AATGATATTTGATCGCTATATCGACCAATTACTTTATTGCACTCATTTAG
TAAAAGATAGAGTTACTTTAGCCCAAATTCTATTACGTTGCAATATTACA
AATATGAATTCAAATATTGAAAGATTTCTTGAAGTTTGTCGAACAATTGG
TGATCTTAACACGTTATGCATGATTATTGAAGATATTTTAAAAAACAAAG
ACAAAATAGACAATAAAAAAAGAAGTTTCGAAATGGTTAATGGACTTCTT
GAGATATTTGTCACTAATTTCAATATGGATTTTAACTTTGAAAAAGTGGT
AAACTTGGTGATTACCCTATTTTCAGAAGGAGACTTGTTTGCATCTAAGC
TCGATGAATTTTTTTCAAATGAATTTTTTTTAGACCAACTGCGGAGGAGA
TTTTGTCGAGTCATCAATGGCGTCACGAAAAAGGAGTTTCCTAAATGTGA
AAGTTCTAAGAAATTACTTAGACTTTTGTTAAGCATTTTAGGAGAAGAAC
TTTTTTATTATGATAGTTATATAACGGATCGCTATCATCTACATTTTGTC
AGGAAATTATTTAAAGATCGTTATTTTGAAGATATTGTTCTTGAGTTTAT
TTCATCGGAGAAATTCAAATATAGCAATCATGAGCCATTTCCAGCATATA
AGAGGCGAAGCTATATTGAGATTTTAATCGATGATTTTAAAATAGAATTT
TCAAAGAATGATTTATACGGTGAACTTTTATTAGTTCGATACAATAACTT
AAGAACATTAAAAGAGAGAGGATGTCCTAAATTTACATGGAAGCAATCAG
ACGCACACATCTATGGTCATCCTGCAATCGAAAGATTTCTCAGGAGTGAA
GAAGTTACTTTAGTTTATCGAAATTTTAATGATATTGACCAAGCAGTAGA
ATGGTTAATGATTCATTCACATTGGAACGAAGATCATGATTTTACTGGCA
TTGTTAGAGGACATGAAGGAGAAATAGAATTGATTTTACAAAAAGGGAGA
GACCTTCATGAAAGGATGATTGTGAAATACACTTCTTTTATGGATGAAAT
GAAAGAGCTTGAAACACGGTTAAAAAGATTTCCAAAGATATACTCGAAAA
TGGGAGCTTTGAAAAGAACCTCTCCATCATCGAACAAAAATGACATTGTT
CCTGCTAAAAAGGCTCATTTGGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042296XLOC_042296Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067733-exon-scaffold_473-1575043694:169076..169447TCONS_00067733-exon-scaffold_473-1575043694:169076..169447Clytia hemisphaericaexon
TCONS_00067733-exon-scaffold_473-1575043694:168273..168475TCONS_00067733-exon-scaffold_473-1575043694:168273..168475Clytia hemisphaericaexon
TCONS_00067733-exon-scaffold_473-1575043694:167603..167950TCONS_00067733-exon-scaffold_473-1575043694:167603..167950Clytia hemisphaericaexon
TCONS_00067733-exon-scaffold_473-1575043694:166849..167056TCONS_00067733-exon-scaffold_473-1575043694:166849..167056Clytia hemisphaericaexon
TCONS_00067733-exon-scaffold_473-1575043694:164224..166475TCONS_00067733-exon-scaffold_473-1575043694:164224..166475Clytia hemisphaericaexon
TCONS_00067733-exon-scaffold_473-1510915933:169076..169447TCONS_00067733-exon-scaffold_473-1510915933:169076..169447Clytia hemisphaericaexon
TCONS_00067733-exon-scaffold_473-1510915933:168273..168475TCONS_00067733-exon-scaffold_473-1510915933:168273..168475Clytia hemisphaericaexon
TCONS_00067733-exon-scaffold_473-1510915933:167603..167950TCONS_00067733-exon-scaffold_473-1510915933:167603..167950Clytia hemisphaericaexon
TCONS_00067733-exon-scaffold_473-1510915933:166849..167056TCONS_00067733-exon-scaffold_473-1510915933:166849..167056Clytia hemisphaericaexon
TCONS_00067733-exon-scaffold_473-1510915933:164224..166475TCONS_00067733-exon-scaffold_473-1510915933:164224..166475Clytia hemisphaericaexon
TCONS_00067733-exon-scaffold_473-1491911889:169076..169447TCONS_00067733-exon-scaffold_473-1491911889:169076..169447Clytia hemisphaericaexon
TCONS_00067733-exon-scaffold_473-1491911889:168273..168475TCONS_00067733-exon-scaffold_473-1491911889:168273..168475Clytia hemisphaericaexon
TCONS_00067733-exon-scaffold_473-1491911889:167603..167950TCONS_00067733-exon-scaffold_473-1491911889:167603..167950Clytia hemisphaericaexon
TCONS_00067733-exon-scaffold_473-1491911889:166849..167056TCONS_00067733-exon-scaffold_473-1491911889:166849..167056Clytia hemisphaericaexon
TCONS_00067733-exon-scaffold_473-1491911889:164224..166475TCONS_00067733-exon-scaffold_473-1491911889:164224..166475Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_473supercontigscaffold_473:164224..169447 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.606777	4.07973e-07	0.00587776	0	0.190589	0	0	0	0	0.319101	0	0.2854	4.9521e-08	0.0644889	0.216393	7.06543e-09	0.83849	1.46941e-07	0	0.186023	1.89555e-05	1.05954	8.9945e-06	0	0	0	0.00353063	0.402133	1.17322e-07	1.40327e-05
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067733 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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