TCONS_00067764 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067764
Unique NameTCONS_00067764
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length523

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067764 ID=TCONS_00067764|Name=TCONS_00067764|organism=Clytia hemisphaerica|type=transcript|length=523bp
AAATCAGCTGATTACTTTAAAGTGATTTCATAAAATTCACATGGCCCACC
ACCACTGCACTAACCAACATGTCTCATACTGACTGCTCCACACCCTGACT
GTTCGTATTTCCATTATGCATCAACTTTTTATTCACAGATTCAAGATGAA
ATAGTGATCCCAGAAACGGAGATGCTGGAAGACAAAAATAAAAGCCCATT
TGAGGACAACGAAGAtacaaacagaaagaaaaatcaagaTAGTGATAatg
gtgatgatgatgatgatccTACTCAGTCTCTGTCCCATAGGGATAGCAGT
TATATTCCATCTTCGCCAAATTATACCCCAGAAAAGGAACCTGCTTAAGA
GGCAGCCAATGAAAATAACAATCAGGAAGTATTGACAGTATCACAAGACC
AAGTTTTCAACACTCAGGCAGTCAACACATTTACTAAAAGGGCAGCTCAA
TTCTTAGCCGAAGATCTTAGTGAGGATCAATTGATGCCCAAGGACTTTTT
CAAGATAGCACATCTAATTTGTG
Run BLAST on NCBI

transcript from alignment at scaffold_474:15858..18980-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067764 ID=TCONS_00067764|Name=TCONS_00067764|organism=Clytia hemisphaerica|type=transcript|length=3123bp|location=Sequence derived from alignment at scaffold_474:15858..18980- (Clytia hemisphaerica)
AAATCAGCTGATTACTTTAAAGTGATTTCATAAAATTCACATGGCCCACC
ACCACTGCACTAACCAACATGTCTCATACTGACTGCTCCACACCCTGACT
GTTCGTATTTCCATTATGCATCAACTTTTTATTCACAGATTCAAGATGAA
ATAGTGATCCCAGAAACGGAGATGCTGGAAGACAAAAATAAAAGCCCATT
TGAGGTATGTTTTTTTGTATATACAGCACCTGTTCCTTATACCCTTCCCT
ATTCCTTATATAAATATGTTGATTCTCTTTTGCTTGAACTGTGAAATGAA
ATGGAGTTCATTTTTAGTTCATGAACATGAAGATGGGTACAATTTACAGG
TATGCACTATAATTGTAGTGGCACAAATCTACCTATAATTGACAGACAAT
TCATGATCTGTTTGTTGTTTTTCTTATTTAGGACAACGAAGATACAAACA
GAAAGAAAAATCAAGATAGTGATAATGGTGATGATGATGATGATCCTACT
CAGTCTCTGTCCCATAGGGTAAATTGTTGAATGTTTTTGTCGAAATACTC
CTATGTGTTGAGATTGAGTGTATATTACCCTTATTGGAAGAAATTTTGGA
GGGAATTTAATTTGGCGGATGGCCGAAAAAATTTTTTAGAGGGAAATAAA
TTTGGCGGATGGCCGAAAAATTAATTTGGCGGATGGCAGATTTTTAGCTC
CAAAATCAAGATCAAAACATTGATATTGCATACTTTTAGTGGGTAAATTG
TGAAAAAGCATGGTTTGGGCTGTGAATTTGAATTTTGTTTAGGTTTATCT
GTTCAAACTGCCTTAGAAAAAGCGAAAAAATTGACCTTAGAGAGAACTTT
TGCAAATAGGTACCCTTAAGAGACTATTTCAGAAAGATTTTTGACTTCCA
TAGTTTTGGTACTTTTATAGACCAATTATATACAGTTTTTGATAAAGGTT
TGAATGATTTTTTCTTGATATTTAACAAATACATATACTTTAATCATTTC
AGGATAGCAGTTATATTCCATCTTCGCCAAATTATACCCCAGAAAAGGAA
CCTGCTTAAGAGGCAGCCAATGAAAATAACAATCAGGAAGTATTGACAGT
ATCACAAGACCAAGTTTTCAACACTCAGGCAGTCAACACATTTACTAAAA
GGGCAGCTCAATTCTTAGCCGAAGATCTTAGTGAGGATCGTAAGTGACTT
TCTTAGTGAATTTATACAAAAACAATTTCCCGTAAGCAAAGCTTAGCTGG
GCTGCTCTGCCACCCAAATCTCCCGAGTGAGTATAGTTGGACAGAAATTC
CTATTTCTTCACATATAATATGACAGACTCGATAAAGAAGTCGAAATATT
TAGAAATTCACCATCTCTCTTTTTTGTATTTTGAATGTCGAGATAAAAAA
GAGCTTATTCGGTTCATTAAGTTCTGTTTTATTTGTTATTAAATTTTCTG
GCAAAAATGGATTTTGTTTACCATTTTTCATTTCCCTTTTTCACAGACGT
TTTATATAATAGTCTAGAAGTATAAAACCTTCAACTATTCAAAATGGAAA
CAATAAAGACAAAAACCCACAAAACAAAAAGACAATATAAATACAACAAA
AATCTAGAATGAATATTCACAGAAAATCAATCAGGTTGGAGTAGAAAAGG
AAAATATGATGACATAGAAATCCGTCAATGTAAAACTAGTGCNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNCAAGAAAACACATTATCTGTTCCTCAGTTTTCGACCT
ACACAGGATTTCGGCCATTTGTGAAAATATCCTCCTATATGATGGAAATA
GGGTTGTGTAGGTAGGTCAAGCAGTGTTAATTAGACACCACCACGGATAA
AAGATAGTAAAAAGATGTGTTTATTGAAAGTATCAAATGCGCGCAATAAT
ATAAAATAAACTAAAACGTAAAAACCACGGAACCAGCCAAAGAAACTAAA
ATTACAATGAGAAAAGAAGTATACTTTCTACTAGACAAAGTTGCCACACC
TTTGACACGTTTCTGCCACAACGTTGAAGAAAGCATACTAGAAGAGAAGG
AACTGGGATTGGATTGCCACTATCCAACCCTGGCTCCCACACACATTTTA
CAGTTCAAAGAATAAGATGGAAAGAGTGGGGAAAGAATGAGAATTTAAAA
AATCGGACTAGAACCCGGTTCGAAGCCCCGTACACCGTGACCGCTCACCG
CAAGAGCTGGCGAACGAGTGAATCTTGAGAGAGTTGAAATCTTGAAAATT
CTGAGAAATGACGAACTATAACCCGTCGAAGACTGCAATCTAACTTTGCG
TTTTCAGCACCTTGACATCCCATTCTTTGTATAAAAACTTTGGCTTTAAC
TTTCAAGTCCTCGAAAAGTAACTTAGAACGAGCAATCCTGAGAAGTTCAC
CAACAAAAGAAGAATAAAAAATCGATTCTGGCAAGTTGCTATCTTTATGT
GGCATTCGGACTATGGAAAAAGGAAATGCATCCCGTTTATCAAACAACTT
ATAAATAAATATCCCGTCTTTGATGGTAATATCCAGGTTTAAATAAGAAG
CATGATTACCAGAGTGCTCAATTTTGAGTTCAAGCTCATCTGGATAGACA
CAGACTGAAACATGTTACCGTCATTGATAGCACACAAATCATCAATGAAT
CTTTTAATCGAATGAAAATGGCGAGCCTTAACCTTATTTTCCTCAATGAC
CCTGCTCATATACCTTTGTTCGTATTGGTAGAGGAAAAGATTAGCCCAAA
ATGGCGCCGGATCGATTCCCATGGGAATCACGATCACTTGACACATAACA
ATATCACCTGCATTGAAAAAACAATTTTTTATCAGATGTTTCATATCAGT
ATATATATATTTTTTTAATTTCTTCTAGAATTGATGCCCAAGGACTTTTT
CAAGATAGCACATCTAATTTGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042322XLOC_042322Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067764-exon-scaffold_474-1575043694:18777..18980TCONS_00067764-exon-scaffold_474-1575043694:18777..18980Clytia hemisphaericaexon
TCONS_00067764-exon-scaffold_474-1575043694:18463..18549TCONS_00067764-exon-scaffold_474-1575043694:18463..18549Clytia hemisphaericaexon
TCONS_00067764-exon-scaffold_474-1575043694:17792..17978TCONS_00067764-exon-scaffold_474-1575043694:17792..17978Clytia hemisphaericaexon
TCONS_00067764-exon-scaffold_474-1575043694:15858..15902TCONS_00067764-exon-scaffold_474-1575043694:15858..15902Clytia hemisphaericaexon
TCONS_00067764-exon-scaffold_474-1510915933:18777..18980TCONS_00067764-exon-scaffold_474-1510915933:18777..18980Clytia hemisphaericaexon
TCONS_00067764-exon-scaffold_474-1510915933:18463..18549TCONS_00067764-exon-scaffold_474-1510915933:18463..18549Clytia hemisphaericaexon
TCONS_00067764-exon-scaffold_474-1510915933:17792..17978TCONS_00067764-exon-scaffold_474-1510915933:17792..17978Clytia hemisphaericaexon
TCONS_00067764-exon-scaffold_474-1510915933:15858..15902TCONS_00067764-exon-scaffold_474-1510915933:15858..15902Clytia hemisphaericaexon
TCONS_00067764-exon-scaffold_474-1491911889:18777..18980TCONS_00067764-exon-scaffold_474-1491911889:18777..18980Clytia hemisphaericaexon
TCONS_00067764-exon-scaffold_474-1491911889:18463..18549TCONS_00067764-exon-scaffold_474-1491911889:18463..18549Clytia hemisphaericaexon
TCONS_00067764-exon-scaffold_474-1491911889:17792..17978TCONS_00067764-exon-scaffold_474-1491911889:17792..17978Clytia hemisphaericaexon
TCONS_00067764-exon-scaffold_474-1491911889:15858..15902TCONS_00067764-exon-scaffold_474-1491911889:15858..15902Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_474supercontigscaffold_474:15858..18980 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.903892	1.52957	0.767574	0.250317	5.1251	2.47477	1.72087	1.77974	1.28854	1.24898	1.38245	0.880802	0.395651	0.390188	1.09616	1.73511	0.332734	1.16584	1.08754	1.25683	0.998831	0.890649	0.388644	0.746829	0.141984	0.931815	1.59398	1.84244	2.1319	1.4177
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067764 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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