|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067770 ID=TCONS_00067770|Name=TCONS_00067770|organism=Clytia hemisphaerica|type=transcript|length=825bp
GCTCGGAAGGAATTGAATTCTTGGAAAAAAATGGTGGTCTTggtttttta
aaatctttcaaaaatggtGTGCCCGAAAAGAATAAATTTGAAGGTTGTGT
AAGCGAAGAATATGCATtagaaaagttgaatttgaaatcTGCTGAACTCC
TTTCAAAAGGTGCTGATGTAGAAGAAAATTTAATTACTAATTACTTGAAC
CCAGAAGATCAGACCACTGACATtaacaaggaaaatgaaaaagatgacaT
CAGGGAACTGATCTCTGAAGAAGTTCTTACAGATCTAGAATcaggagatg
tgaaagatgaAGAGTTAGAAGCTTCTGAAAAGAGAAAATGGTATTTGTCA
AGAGTTGTTAACGGCGAGGTAAGGGATATCCATTTAGCACAGGCACTGAA
ACTTTTCATCCCTCGTGAGTATGTCTCTAGAGAGAGGTCTAGAAGACACA
TTGCTGCCAAATTCCTCCCAGATCGAGGTGAACTGGATGAACAGCACAAT
GTGATTGCCTTTAGATTTGTTTTAGCTAAAGTTTCTGGGAAAATCTCTGT
TTGCAAAGTGGCAGCACTTAATTGTAATGGTAAATCTGTGATGAGTGCTT
CAAACTTGGATGACAAAGTAACTTGTCTTCTTATTCCTCTTGAAAAGGTG
CCATTAGAGACTAATTTGTATGTTTTGCCCATGAAAATTATTGTTAGCAG
TTGGATCAAGGTGTCAAATGTGATTGGGGAGTTGAAGATGTCCTGTAACC
AAAATGGACAGTACAACATATTAGAAAAATCCCTTAGTGTTTTACAGGAA
gctgaaaaatctcaaaatttgtcGG Run BLAST on NCBI protein sequence of TCONS_00067770-protein >TCONS_00067770-protein ID=TCONS_00067770-protein|Name=TCONS_00067770-protein|organism=Clytia hemisphaerica|type=polypeptide|length=274bp
SEGIEFLEKNGGLGFLKSFKNGVPEKNKFEGCVSEEYALEKLNLKSAELL
SKGADVEENLITNYLNPEDQTTDINKENEKDDIRELISEEVLTDLESGDV
KDEELEASEKRKWYLSRVVNGEVRDIHLAQALKLFIPREYVSRERSRRHI
AAKFLPDRGELDEQHNVIAFRFVLAKVSGKISVCKVAALNCNGKSVMSAS
NLDDKVTCLLIPLEKVPLETNLYVLPMKIIVSSWIKVSNVIGELKMSCNQ
NGQYNILEKSLSVLQEAEKSQNLS Run BLAST on NCBI transcript from alignment at scaffold_474:96445..97269 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067770 ID=TCONS_00067770|Name=TCONS_00067770|organism=Clytia hemisphaerica|type=transcript|length=825bp|location=Sequence derived from alignment at scaffold_474:96445..97269 (Clytia hemisphaerica)
CCgacaaattttgagatttttcagcTTCCTGTAAAACACTAAGGGATTTT
TCTAATATGTTGTACTGTCCATTTTGGTTACAGGACATCTTCAACTCCCC
AATCACATTTGACACCTTGATCCAACTGCTAACAATAATTTTCATGGGCA
AAACATACAAATTAGTCTCTAATGGCACCTTTTCAAGAGGAATAAGAAGA
CAAGTTACTTTGTCATCCAAGTTTGAAGCACTCATCACAGATTTACCATT
ACAATTAAGTGCTGCCACTTTGCAAACAGAGATTTTCCCAGAAACTTTAG
CTAAAACAAATCTAAAGGCAATCACATTGTGCTGTTCATCCAGTTCACCT
CGATCTGGGAGGAATTTGGCAGCAATGTGTCTTCTAGACCTCTCTCTAGA
GACATACTCACGAGGGATGAAAAGTTTCAGTGCCTGTGCTAAATGGATAT
CCCTTACCTCGCCGTTAACAACTCTTGACAAATACCATTTTCTCTTTTCA
GAAGCTTCTAACTCTtcatctttcacatctcctgATTCTAGATCTGTAAG
AACTTCTTCAGAGATCAGTTCCCTGAtgtcatctttttcattttccttgt
taATGTCAGTGGTCTGATCTTCTGGGTTCAAGTAATTAGTAATTAAATTT
TCTTCTACATCAGCACCTTTTGAAAGGAGTTCAGCAgatttcaaattcaa
cttttctaATGCATATTCTTCGCTTACACAACCTTCAAATTTATTCTTTT
CGGGCACaccatttttgaaagattttaaaaaaccAAGACCACCATTTTTT
TCCAAGAATTCAATTCCTTCCGAGC Coding sequence (CDS) from alignment at scaffold_474:96445..97269 >TCONS_00067770 ID=TCONS_00067770|Name=TCONS_00067770|organism=Clytia hemisphaerica|type=CDS|length=822bp|location=Sequence derived from alignment at scaffold_474:96445..97269 (Clytia hemisphaerica)
CgacaaattttgagatttttcagcTTCCTGTAAAACACTAAGGGATTTTT
CTAATATGTTGTACTGTCCATTTTGGTTACAGGACATCTTCAACTCCCCA
ATCACATTTGACACCTTGATCCAACTGCTAACAATAATTTTCATGGGCAA
AACATACAAATTAGTCTCTAATGGCACCTTTTCAAGAGGAATAAGAAGAC
AAGTTACTTTGTCATCCAAGTTTGAAGCACTCATCACAGATTTACCATTA
CAATTAAGTGCTGCCACTTTGCAAACAGAGATTTTCCCAGAAACTTTAGC
TAAAACAAATCTAAAGGCAATCACATTGTGCTGTTCATCCAGTTCACCTC
GATCTGGGAGGAATTTGGCAGCAATGTGTCTTCTAGACCTCTCTCTAGAG
ACATACTCACGAGGGATGAAAAGTTTCAGTGCCTGTGCTAAATGGATATC
CCTTACCTCGCCGTTAACAACTCTTGACAAATACCATTTTCTCTTTTCAG
AAGCTTCTAACTCTtcatctttcacatctcctgATTCTAGATCTGTAAGA
ACTTCTTCAGAGATCAGTTCCCTGAtgtcatctttttcattttccttgtt
aATGTCAGTGGTCTGATCTTCTGGGTTCAAGTAATTAGTAATTAAATTTT
CTTCTACATCAGCACCTTTTGAAAGGAGTTCAGCAgatttcaaattcaac
ttttctaATGCATATTCTTCGCTTACACAACCTTCAAATTTATTCTTTTC
GGGCACaccatttttgaaagattttaaaaaaccAAGACCACCATTTTTTT
CCAAGAATTCAATTCCTTCCGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067770-exon-scaffold_474-1491911889:96445..97269 | TCONS_00067770-exon-scaffold_474-1491911889:96445..97269 | Clytia hemisphaerica | exon |
| TCONS_00067770-exon-scaffold_474-1510915933:96445..97269 | TCONS_00067770-exon-scaffold_474-1510915933:96445..97269 | Clytia hemisphaerica | exon |
| TCONS_00067770-exon-scaffold_474-1575043694:96445..97269 | TCONS_00067770-exon-scaffold_474-1575043694:96445..97269 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_474 | supercontig | scaffold_474:96445..97269 . |
Blast
The following BLAST results are available for this feature:
|
