TCONS_00067807 (transcript) - C. hemisphaerica

Overview
NameTCONS_00067807
Unique NameTCONS_00067807
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1712

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00067807 ID=TCONS_00067807|Name=TCONS_00067807|organism=Clytia hemisphaerica|type=transcript|length=1712bp
aggttttccaTTGAATTACAGGTTTACAGTGGACTTTGGTTCTTGAGAAG
CATTTGGACGCAGTAATTGCATCACTATGACTTGAGAATCCAAATGTGAA
CACAACGTTGAAACGTGTTGCCATCGACATACCTTGTCTGATGTTACCAT
GAAATGTGTGTCGTGGAATATCATTGCCTTTCATCATCCCGATGGTCCGA
CGCATTCGAGACTCTGACATCCACTAATCTCATCCAAAGATAATCGAGAG
ATAGTGTCTTCAAATATAGTTTACCTATCATAAAGATGACGGAGACAACA
ACCTAAATGAAGAAAAGATTCAAAACATGTCAAGTTTAACCCAATCTTTA
ATTTGATGTTGTGGATGATAACTGGATTTGTCTTCAAAGATGCAGGAAGA
AGATATTCAAGAAGGTCAGCTTTTGGACATTGTGTTTTTATTGCTGACCA
AGTCTTCAAAAACACTTCCAACCAACAACGTCATGTCTTTGGAGGTGACA
CAACACGTGGATCAACGAGTTCCTTCAAAGCATTGGCAAACAAGAACAaa
tttgggtttgtttctgatgAATCTTCCGTTTCCTTCAGGAACCGCTCATT
GATTACAGCTGCATGCGGGGAAAGCATCGTTCCATCATTGCCATTACACG
AAAGGCGATACAGTCAACCTTCAGACGGAATTGATGAGTTGACTTCCGCC
TTTCAACGTCTTTCAGTAAACGGCTCCCCGCCCATTGATCCGCCCACAGC
ACCCATCGTGCAAACAGCAGCACCCATTGATCCGCCCACAGCACCCATCG
TGCAAGCAGCAGCACCCATTGAGCCGCCCGCAGCACTTATCGCGCAATCC
ACAACACCAGTTGAAAATTCATTAACAGCTAATGAGATAACCACAGCATT
CTCTTCAACTATAAGTGACCACACTACCACAATCACCACCGGACACGCTT
TACCCGACTTCGAATCCACCGACCTCATTGATGCTCTTGAACAGGAATCA
GCTGAAGCGATGGGCGGCACCCACGGTGGCGGTCAACCTCTAGTGGCGGG
TGCAATCACAAATGGGTTCTCCTCTAATGAGGAGTACTATCAATTTCTTC
AGCTCATGCTGACTGCTGTCAATCAGCTGCAACAAGAACTCTTGATGGAA
GAGCGTGCTGAACAGGCTGCAAGAGACGCACGGGCCACACGGGCTCTTCG
TGATCTTGCTGCGAACGAAAACCGCGCTCAACCCATTCGACACGCTCGAC
GAAGAAGACGTCGCGAAGAAATGGAGGGCCTCGAGAATGATCCTAACGCC
GCTAAACGGCGCCGAAGACTTTAAGTCTTTAAACAAAATGCTTCGAAGAT
ACCCTCACGCACTCACTCCACCTTTCAAACCAACAATCTATTTTCTTAAC
AAACCCAACGTACATCCATCGTCCACTTCCCAATGCAATAATCCTCTTCT
TGAGGCTAAATAATAAGTAACcggagaagaaagaagaaaatccaATTCCA
TACCGAACGAACGAAATTCCAGGAAAACACAACAGTTGACTTCAATAAAC
TAACTTAAATCACGTGACTTCATCTCACCGATATGGTCAGAGCAAAACCT
TCCCATCGAAGCtaaaaatatatcatttataATATATCAATCATTTCTAT
TAATTTGTTCAGTTTTTGCATGATAAGTTTGAACAGTGAAATCCCTATTA
TCCTTCATCAGA
Run BLAST on NCBI

transcript from alignment at scaffold_476:192423..196110+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00067807 ID=TCONS_00067807|Name=TCONS_00067807|organism=Clytia hemisphaerica|type=transcript|length=3688bp|location=Sequence derived from alignment at scaffold_476:192423..196110+ (Clytia hemisphaerica)
aggttttccaTTGAATTACAGGTTTACAGTGGACTTTGGTTCTTGAGAAG
CATTTGGACGCAGTAATTGCATCACTATGACTTGAGAATCCAAATGTGAA
CACAACGTTGAAACGTGTTGCCATCGACATACCTTGTCTGATGTTACCAT
GAAATGTGTGTCGTGGAATATCATTGCCTTTCATCATCCCGATGGTCCGA
CGCATTCGAGACTCTGACATCCACTAATCTCATCCAAAGATAATCGAGAG
ATAGTGTCTTCAAATATAGTTTACCTATCATAAAGATGACGGAGACAACA
ACCTAAATGAAGAAAAGATTCAAAACATGTCAAGTTTAACCCAATCTTTA
ATTTGATGTTGTGGATGATAACTGGATTTGTCTTCAAAGGTAAGAATCCA
AAATTCGGGTGTTTTACTATCAGTTTTCTCTTTATATAGAATGTGTAGCC
TGGATGTGAATCTATTGTCCAACTGACTAGGATTTTCTTTAAGTTTATTC
ACTTCGAGGCCAAGCAAAACCAAACATAATTTCTGAGTCCTGATTTTGCT
CAGGGTCAGGGGGTTTCAAATTATGAATACTAGACAACAtcataaaatga
cgtcacagtaTCTCtctaaatattaaaatatttgacgtcaattatttgtC
GTTCAAAATAATCTCTCATTTTGAAATCGACTAGTGGTCTAGTCGATTGT
CCTGTCAGTAGAATAGTATTTAATAGTAATAATTTtgcaatttctttgaa
aatggaATGGTCTGATCAAGTTCAACGTTTTCAGTGCCATtcattgaata
aaaattcattttcttccTCTGTTTGGATTCTATACGAAGATGCAGGAAGA
AGATATTCAAGAAGGTCAGCTTTTGGACATTGTGTTTTTATTGCTGACCA
AGTCTTCAAAAACACTTCCAACCAACAACGTCATGTCTTTGGAGGTGACA
CAACACGTGGATCAACGAGTTCCTTCAAAGCATTGGCAAACAAGAACAaa
tttgggtttgtttctgatgAATCTTCCGTTTCCTTCAGGAACCGCTCATT
GATTACAGCTGCATGCGGGGAAAGCATCGTTCCATCATTGCCATTACACG
AAAGGCGATACAGTCAACCTTCTGACGGAATTGATGAGTTGACTTCCGCC
TTTCAACGTCTTTCAGTAAACGGCTCCCCGCCCATTGATCCGCCCACAGC
ACCCATCGTGCAAACAGCAGCACCCATTGATCCGCCCACAGCACCCATCG
TGCAAGCAGCAGCACCCATTGAGCCGCCCGCAGCACTTATCGCNTACAGT
GGACTTTGGTTCTTGAGAAGCATTTGGACGCAGTAATTGCATCACTATGA
CTTGAGAATCCAAATGTGAACACAACGTTGAAACGTGTTGCCATCGACAT
ACCTTGTCTGATGTTACCATGAAATGTGTGTCGTGGAATATCATTGCCTT
TCATCATCCCGATGGTCCGACGCATTCGAGACTCTGACATCCACTAATCT
CATCCAAAGATAATCGAGAGATAGTGTCTTCAAATATAGTTTACCTATCA
TAAAGATGACGGAGACAACAACCTAAATGAAGAAAAGATTCAAAACATGT
CAAGTTTAACCCAATCTTTAATTTGATGTTGTGGATGATAACTGGATTTG
TCTTCAAAGGTAAGAATCCAAAATTCGGGTGTTTTACTATCAGTTTTCTC
TTTATATAGAATGTGTAGCCTGGATGTGAATCTATTGTCCAACTGACTAG
GATTTTCTTTAAGTTTATTCACTTCGAGGCCAAGCAAAACCAAACATAAT
TTCTGAGTCCTGATTTTGCTCAGGGTCAGGGGGTTTCAAATTATGAATAC
TAGACAACAtcataaaatgacgtcacagtaTCTCtctaaatattaaaata
tttgacgtcaattatttgtCGTTCAAAATAATCTCTCATTTTGAAATCGA
CTAGTGGTCTAGTCGATTGTCCTGTCAGTAGAATAGTATTTAATAGTAAT
AATTTtgcaatttctttgaaaatggaATGGTCTGATCAAGTTCAACGTTT
TCAGTGCCATtcattgaataaaaattcattttcttcatctGTTTGGATTC
TGTACGAAGATGCAGGAAGAAGATATTCAAGAAGGTCAGCTTTTGGACAT
TGTGTCTTTATTGCTGACCAAGTCTTCAAAAATACTTCCAACCAACAACG
TCATGTCTTTGGAGGTGACACAACACGTGGATCAACGAGTTCCTTCAAAG
CATTGGCAAACAAGAACAAATTTGGGTTTATTTCTGATGAATCTTCCGTT
TCCTTCAGGAACCGCTCATTGATTACAGCTGCATGCGGGGAAAGCATCGT
TCCATCATTGCCACTACACGAAAGGCGATACAGTCAACCTTCAGACGGAA
TTGATGAGTTGACTTCCGCCTTTCAACGTCTTTCAGTAAACGGCTCCCCG
CCCATTGATCCGCCCACAGCACCCATCGTGCAAACAGCAGCACCCATTGA
TCCGCCCACAGCACCCATCGTGCAAGCAGCAGCACCCATTGAGCCGCCCG
CAGCACTTATCGCGCAATCCACAACACCAGTTGAAAATTCATTAACAGCT
AATGAGATAACCACAGCATTCTCTTCAACTATAAGTGACCACACTACCAC
AATCACCACCGGACACGCTTTACCCGACTTCGAATCCACCGACCTCATTG
ATGCTCTTGAACAGGAATCAGCTGAAGCGATGGGCGGCACCCACGGTGGC
GGTCAACCTCTAGTGGCGGGTGCAATCACAAATGGGTTCTCCTCTAATGA
GGAGTACTATCAATTTCTTCAGCTCATGCTGACTGCTGTCAATCAGGTGA
GACATCCATTACAACAGTTgaaatttcctttaaaagtccTCTGGATTCAA
CCTGGAAAACGTGCAGCGTTTTTGACATTccgtgtttttttatatttaga
tACCGGCAGGTGCTCAAAATTGAGGGAAACTCAATTATAAATCTTTTTCG
ACAAAATACTCccgaaaatatcttttttaaccCGATTCTTTTCCCATATT
TTCTCTTGTAGGGTATTGAATTTAATCTTGTTTAAAATGATTCATTTTTC
AGCTGCAACAAGAACTCTTGATGGAAGAGCGTGCTGAACAGGCTGCAAGA
GACGCACGGGCCACACGGGCTCTTCGTGATCTTGCTGCGAACGAAAACCG
CGCTCAACCCATTCGACACGCTCGACGAAGAAGACGTCGCGAAGAAATGG
AGGGCCTCGAGAATGATCCTAACGCCGCTAAACGGCGCCGAAGACTTTAA
GTCTTTAAACAAAATGCTTCGAAGATACCCTCACGCACTCACTCCACCTT
TCAAACCAACAATCTATTTTCTTAACAAACCCAACGTACATCCATCGTCC
ACTTCCCAATGCAATAATCCTCTTCTTGAGGCTAAATAATAAGTAACcgg
agaagaaagaagaaaatccaATTCCATACCGAACGAACGAAATTCCAGGA
AAACACAACAGTTGACTTCAATAAACTAACTTAAATCACGTGACTTCATC
TCACCGATATGGTCAGAGCAAAACCTTCCCATCGAAGCtaaaaatatatc
atttataATATATCAATCATTTCTATTAATTTGTTCAGTTTTTGCATGAT
AAGTTTGAACAGTGAAATCCCTATTATCCTTCATCAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_042347XLOC_042347Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00067807-exon-scaffold_476-1491911889:192423..192811TCONS_00067807-exon-scaffold_476-1491911889:192423..192811Clytia hemisphaericaexon
TCONS_00067807-exon-scaffold_476-1510915933:192423..192811TCONS_00067807-exon-scaffold_476-1510915933:192423..192811Clytia hemisphaericaexon
TCONS_00067807-exon-scaffold_476-1575043694:192423..192811TCONS_00067807-exon-scaffold_476-1575043694:192423..192811Clytia hemisphaericaexon
TCONS_00067807-exon-scaffold_476-1491911889:193262..193526TCONS_00067807-exon-scaffold_476-1491911889:193262..193526Clytia hemisphaericaexon
TCONS_00067807-exon-scaffold_476-1510915933:193262..193526TCONS_00067807-exon-scaffold_476-1510915933:193262..193526Clytia hemisphaericaexon
TCONS_00067807-exon-scaffold_476-1575043694:193262..193526TCONS_00067807-exon-scaffold_476-1575043694:193262..193526Clytia hemisphaericaexon
TCONS_00067807-exon-scaffold_476-1491911889:194797..195268TCONS_00067807-exon-scaffold_476-1491911889:194797..195268Clytia hemisphaericaexon
TCONS_00067807-exon-scaffold_476-1510915933:194797..195268TCONS_00067807-exon-scaffold_476-1510915933:194797..195268Clytia hemisphaericaexon
TCONS_00067807-exon-scaffold_476-1575043694:194797..195268TCONS_00067807-exon-scaffold_476-1575043694:194797..195268Clytia hemisphaericaexon
TCONS_00067807-exon-scaffold_476-1491911889:195525..196110TCONS_00067807-exon-scaffold_476-1491911889:195525..196110Clytia hemisphaericaexon
TCONS_00067807-exon-scaffold_476-1510915933:195525..196110TCONS_00067807-exon-scaffold_476-1510915933:195525..196110Clytia hemisphaericaexon
TCONS_00067807-exon-scaffold_476-1575043694:195525..196110TCONS_00067807-exon-scaffold_476-1575043694:195525..196110Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_476supercontigscaffold_476:192423..196110 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.309919	1.23456e-05	1.7023e-09	0	0.782589	0.767009	0.239183	0.633001	0	0.93035	0.141964	0.147796	0.592843	0.487216	0.957371	0.82865	0.535337	1.31353	0.180016	0.128038	0.994939	0.0664853	0.731733	0.998638	0	0.390251	0.525591	0	0.874675	0.65747
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00067807 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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