|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00067827 ID=TCONS_00067827|Name=TCONS_00067827|organism=Clytia hemisphaerica|type=transcript|length=762bp
TTCAGTTGCTTATATAAATTTTCATGTCaaggaaaaaataatgtatTAAA
CGAAATAATGTCAGAGATAGACGAAGACACACCGCAAGAGGTAACTCCTG
ATGATGCTCCTGCTGCTATTGATCCACCAATCAATGAAGAGCAGCAACCT
GATGAAGGTGTGGATCAGAAGGATGAATCTGCACCACATGATGAgtcaaa
tgagaaACAGCAAGAAGATGGTCAACAGCAAGAAGATGGTCAACAGCAAG
AAGATGGTCAACAGCAAGAAGATGGTCAACAGCAAGAAGATGGTCAACAG
CAAGAAGATGGTCAACAGCAAGAAGATGGTCAACAGCAAGAAGATGGTCA
ACAGCAAGAAGATGGTCAACAGCAAGAAGATGGTCAACAGCAAGAAGATG
GTCAACAGCAAGAAGATGgtcaacagcaacaacaacaacaggtTGAATTG
AAAGAAGCTGTGTCTGAGGGAAATGTTGAACAACAAGGAGGAGATCCATC
GatAACTGAGCCACTTGTTGAGAAGAGAGAAGAGGAGCAACAAGAAAGTC
AGGGAGAAACTTCTCATGATATTGAAATTCTCGAAACGCCAACGACACCG
CCCCCACCACCCAAACATTTAGAGAATGATATCATTCTTGAAGTTGACGA
AGAACAAAGTCATAGCTTAGATAGTGGTGATAATTTGGATGAAGAATTGG
AGGATGAAGAGACTGGCAGTCTAGTCTTTGATCGTGAACAGTTGCTACAA
CAATACAAGGTT Run BLAST on NCBI transcript from alignment at scaffold_476:115706..117589- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00067827 ID=TCONS_00067827|Name=TCONS_00067827|organism=Clytia hemisphaerica|type=transcript|length=1884bp|location=Sequence derived from alignment at scaffold_476:115706..117589- (Clytia hemisphaerica)
TTCAGTTGCTTATATAAATTTTCATGTCAAGGAAAAAATAATGTATTAAA
CGAAATAATGTCAGAGATAGACGAAGACACACCGCAAGAGGTAACTCCTG
ATGATGCTCCTGCTGCTATTGATCCACCAATCAATGAAGAGCAGCAACCT
GATGAAGGTGTGGATCAGAAGGATGAATCTGCACCACATGATGAGTCAAA
TGGTAAAAAAGATTTTTCATATGTTTTAATATTTTCTGCACCAACACATA
TAAGAACATCTTTAAAATTTTTGAAGCTTCAATGTTCTTAACTTCTTGAG
TTTTAGGCCTAAAAAATGTGTTCTTAACATATTCTTATTTCACTGTTTTT
TGAGTATTATTTTGATCCGATTTTCTATGAAATTGGGTGTTTTAGAATCC
ACAAAGCCTTAAAATGTTTTTATCTTGTTTTTATTAAATTTTGGCCAACA
AAATTTTAGAATTATCTGAAGGCTTTAAAGATTTTGGATGTTCTTTCTTT
TATAAGAGAAACAGCAAGAAGATGGTCAACAGCAAGAAGATGGTCAACAG
CAAGAAGATGGTCAACAGCAAGAAGATGGTCAACAGCAAGAAGATGGTCA
ACAGCAAGAAGATGGTCAACAGCAAGAAGATGGTCAACAGCAAGAAGATG
GTCAACAGCAAGAAGATGGTCAACAGCAAGAAGATGGTCAACAGCAAGAA
GATGGTCAACAGCAAGAAGATGGTCAACAGCAACAACAACAACAGGTTGA
ATTGAAAGAAGCTGTGTCTGAGGGAAATGTTGAACAACAAGGAGGAGATC
CATCGGTTTGTAATAATTTGATACATGTTTTTTTATATAAGAAAAAACCA
ATTAAGAACATTGAGGCTTTGATGACCAAGAACATCTTAAGACTTTATGG
ACCCAGATCCCATTTTTTTAGGGAATCGCTCAAATAAAAACATTGTAGTA
CTGTATTATTAAGAATTAAATCAAATAAAAGAATTAGCTGCTTAATTTGA
CCTGAACGGAATCGTTTTTTCAAGTTTTCACCATTGTTTTCTGTTTTCTT
TGTTTAGATAACTGAGCCACTTGTTGAGAAGAGAGAAGAGGAGCAACAAG
AAAGTCAGGGAGAAACTTCTCATGATATTGAAATTCTCGAAACGCCAACG
ACACCGCCCCCACCACCCAAACATTTAGAGAATGATATCATTCTTGAAGT
TGACGAAGGTATTGTAATTATAATACTGAAGAAATATTAATTTAATCTGA
GTAATTATTATTATCATCTATGTTTGCTATTTATTTGCAAACAATTTATA
AAACACAGCTTAAAGCTGCCCGAGTAATCTCCGAGCAGATTCTGATACTC
CGTGCATGACACATATTCACTTTTAAGTCCATGGTTCCGCGAGAGAATCT
GTCCAGGTTAGCGCACCGTTGTGTTTTTTTATTCCAGATTTGGGAAGAAT
ATTAAATGAGCTTTTGAGGGCGCTGATTGGTTAAGGCAAAACAATAGCAC
CAAAATCAAAAGCCAATCACAAACATAAAGATTTGAACCCTTTCACTTTT
ACATTCGTTTTCAAACAAAAAGCAGCGCTCTTTTAAATGTTTTTGCTGAA
CAACAAGGTCAAATCATCACATTCGCCATATCCCTTTAGAGCATAGCGTG
GTATGTGCAGAATGGATGATCTGTTATGAGACTAGAGCCCAAGAGAAAAC
ACTGTTTGTTCCACTTTTTGAACATTTGATTGACATTTAACTGATCCTAC
AATCTTTCGTTTCCTTTTCAGAAGAACAAAGTCATAGCTTAGATAGTGGT
GATAATTTGGATGAAGAATTGGAGGATGAAGAGACTGGCAGTCTAGTCTT
TGATCGTGAACAGTTGCTACAACAATACAAGGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00067827-exon-scaffold_476-1575043694:117388..117589 | TCONS_00067827-exon-scaffold_476-1575043694:117388..117589 | Clytia hemisphaerica | exon |
| TCONS_00067827-exon-scaffold_476-1575043694:116785..117083 | TCONS_00067827-exon-scaffold_476-1575043694:116785..117083 | Clytia hemisphaerica | exon |
| TCONS_00067827-exon-scaffold_476-1575043694:116382..116532 | TCONS_00067827-exon-scaffold_476-1575043694:116382..116532 | Clytia hemisphaerica | exon |
| TCONS_00067827-exon-scaffold_476-1575043694:115706..115815 | TCONS_00067827-exon-scaffold_476-1575043694:115706..115815 | Clytia hemisphaerica | exon |
| TCONS_00067827-exon-scaffold_476-1510915933:117388..117589 | TCONS_00067827-exon-scaffold_476-1510915933:117388..117589 | Clytia hemisphaerica | exon |
| TCONS_00067827-exon-scaffold_476-1510915933:116785..117083 | TCONS_00067827-exon-scaffold_476-1510915933:116785..117083 | Clytia hemisphaerica | exon |
| TCONS_00067827-exon-scaffold_476-1510915933:116382..116532 | TCONS_00067827-exon-scaffold_476-1510915933:116382..116532 | Clytia hemisphaerica | exon |
| TCONS_00067827-exon-scaffold_476-1510915933:115706..115815 | TCONS_00067827-exon-scaffold_476-1510915933:115706..115815 | Clytia hemisphaerica | exon |
| TCONS_00067827-exon-scaffold_476-1491911889:117388..117589 | TCONS_00067827-exon-scaffold_476-1491911889:117388..117589 | Clytia hemisphaerica | exon |
| TCONS_00067827-exon-scaffold_476-1491911889:116785..117083 | TCONS_00067827-exon-scaffold_476-1491911889:116785..117083 | Clytia hemisphaerica | exon |
| TCONS_00067827-exon-scaffold_476-1491911889:116382..116532 | TCONS_00067827-exon-scaffold_476-1491911889:116382..116532 | Clytia hemisphaerica | exon |
| TCONS_00067827-exon-scaffold_476-1491911889:115706..115815 | TCONS_00067827-exon-scaffold_476-1491911889:115706..115815 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_476 | supercontig | scaffold_476:115706..117589 - |
Blast
The following BLAST results are available for this feature:
|
